mRNA_P-littoralis_Contig1169.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1169.25.1
Unique NamemRNA_P-littoralis_Contig1169.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: Q8QNC8_ESV1K (EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC8_ESV1K)

HSP 1 Score: 192 bits (487), Expect = 4.510e-55
Identity = 109/255 (42.75%), Postives = 157/255 (61.57%), Query Frame = 1
Query:   10 AAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDS--DGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS-----TVSIGCELVKFD----------EATVDTLKVSLSETNEKYEFLETMYAAMMHSSN--EPGVTYRALKLQTVKEFYLETILD 717
            AA+EY++RG+  H+    K    +Y+A+L A D+  +GLAKEVCDRFRC+ DFDR AM +IF  S CNDR + +LD +++ KT+      EH F +EF+ +FF+ ME +V     L +L Y    T + M+ AR +++ H   IAT+   CF     + PR  NNL+ +      VSIGC+ V+F           + T+D LK SL + +EK EFLE M+AA+ H+SN  +P VTYR L+L++VK F+LE +LD
Sbjct:   65 AALEYMKRGW--HSPDDAKAKFALYLAILVAYDNAENGLAKEVCDRFRCVYDFDRHAMEQIFKISLCNDRVRKVLDNLLISKTEGTL-VFEHVFNMEFVEIFFNGMEMVVRDMHTLADLGYTSNVTSTDMKLAREIMDNHLGEIATRCSPCFQRNVLRLPRKNNNLFPAGDGFPQVSIGCDPVRFGGVTEDKLENAKNTIDLLKESLMDKDEKGEFLEMMFAAISHASNPRDPVVTYRRLQLESVKHFFLEKMLD 316          
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: D8LPH6_ECTSI (EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH6_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 6.140e-51
Identity = 103/255 (40.39%), Postives = 152/255 (59.61%), Query Frame = 1
Query:   10 AAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDS--DGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS-----TVSIGCELVKFD----------EATVDTLKVSLSETNEKYEFLETMYAAMMHSSN--EPGVTYRALKLQTVKEFYLETILD 717
            AA+E+++RG+  H     K    +Y+A+L A D+  +GLAKEVCDRFR + DFDR  M  IF  S CNDR + LLD +++ KT+      EH F +EF+ +FF+ ME +V     L +L Y    T + M+ AR ++++H   IAT+   CF     + PR  NNL+ +      VSIGC+ V+F           + T+D LK SL + +EK EFL+ M+A + H+SN  +P VTYR L+L + ++F+LE +LD
Sbjct:   65 AALEFMKRGW--HRPQDAKAKFALYLAILVADDNAENGLAKEVCDRFRRIHDFDRHVMEHIFKISLCNDRVRKLLDNLLISKTEGTL-VFEHVFNMEFVEIFFNGMEMVVGDMHTLADLGYASIVTATDMKLAREIMDRHLGEIATRCSPCFQKDVLRLPRKNNNLFPAGDGFPNVSIGCQPVQFGGVTEDKLENVKNTIDLLKESLMDKDEKEEFLQMMFAIISHASNPRDPVVTYRRLRLASARDFFLEKVLD 316          
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5JJK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK7_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.800e-47
Identity = 104/246 (42.28%), Postives = 143/246 (58.13%), Query Frame = 1
Query:   13 AVEYLRRGFADHNTFVRKINIDMYIAVLKAQDSDG----LAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMV--LKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS-----TVSIGCELVKFDEATVDTLKVSLSETNEKYEFLETMYAAMMHSSNEPGVTYRALKLQTVKEFYLETILD 717
            A+EYLR+GFAD +T  RK++I +Y+A+    D D     LAKE C+RF+ L ++D   MTKIFN S  NDR   LLD  +    K K     I  EF+VEF+ L+F  ++S+V R Q LT+L Y    T   +E +    +KH SSIA KF  CF ++  KKPR  NNL+ S      V IG E + FD  T DTL+ SL +   K EF+E M A +      P  T+R L+ ++VK  +++TIL+
Sbjct:  404 ALEYLRQGFADPDTPDRKVSIALYVAIYIGHDHDDGDGVLAKEFCERFQVLGNYDANVMTKIFNLSLWNDRILSLLDTTIAPGRKKKDTFTMIHREFRVEFVLLYFQVVKSLVVRGQSLTDLGYPTNLTADDVEASEETFDKHVSSIADKFWPCFKMEALKKPRVVNNLFPSGDQLPRVVIGREHIDFDLTTTDTLRDSLDDKAGKDEFVEIMRAIICLPMRGPVATFRDLRFESVKNHFMKTILE 649          
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5KVG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.190e-39
Identity = 91/250 (36.40%), Postives = 141/250 (56.40%), Query Frame = 1
Query:    1 LSLAAVEYLRRGFADHNTFVRKINIDMYIAVLKA--QDSDGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQ--PLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS------TVSIGCELVKFDEATVDTLKVSLS-ETNEKYEFLETMYAAMMHSSNEPGVTYRALKLQTVKEFYLETILD 717
            L+ A +E+++    D +T  RK+ + + +AV  A  +   GLAKE+CDR R ++DF+R  MT++FN S   DR   LLD +++ + K +   I+ E  VEF+ LFF  +ESI+ R      + L Y   ATPS M  AR ++EKH S+IA   G CF +K  K+ R + NL  +      T ++G + V F    +  LK SLS ++ E   FL+ ++A M  S   P  T+  ++L T + F+L+ +LD
Sbjct:   52 LTKACMEFMKAEVFDKDTSDRKVMVAIRVAVSIAIGEAQRGLAKEICDRLRKVEDFNRYLMTEVFNLSIVTDRVCTLLDDVIIHQKKHVSKDIQQELCVEFVVLFFGIVESILRRGHCHTFSELGYATSATPSDMGNARNILEKHVSAIAAMCGPCFILKALKEKRPRLNLLPANGTLPQTTTLGTDHVDFASCGIYVLKSSLSHDSKETKTFLDIIFATMSLSHKTPADTFDDIRLDTTRTFFLDKVLD 301          
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5K2L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L9_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.140e-39
Identity = 87/203 (42.86%), Postives = 117/203 (57.64%), Query Frame = 1
Query:   10 AAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDSDG--LAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAST-----VSIGCELVKFDEATVDTLKVSLSETNEK 597
            A+ EYL+ GF D +T +RK+NI +++AV  A D D    A+EVC+RF+ L D+DR  M KI +FS  NDR   LLDK+M+ +     PA + EF  EF+ +FF+ ME +V  +  LT+L Y    TP  ME AR +I KH   IA K   CF  K  K P A+  L+ +T      SIGC  V +DE  +D LK    +  EK
Sbjct:   54 ASQEYLKLGFVDRDTPIRKVNIALWVAVSLANDHDNNKFAQEVCERFQGLYDYDRNVMEKIISFSMYNDRIGKLLDKVMIRQESNTTPAFDLEFNAEFVLIFFNIMECLVKDKHRLTDLGYAANVTPDDMEKAREIIHKHLDDIAMKCSPCFKKKELKPP-ARRELFPATGVLPHPSIGCNHVTYDEV-IDKLKEGFLDNAEK 254          
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5JFF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.810e-36
Identity = 95/258 (36.82%), Postives = 137/258 (53.10%), Query Frame = 1
Query:    1 LSLAAVEYLRRGFADHNTFV-RKINIDMYIAVLKAQD--SDGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTN---------LEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS------TVSIGCELVKFDEATVDTLKVSL-SETNEKYEFLETMYAAMMHSSNEPGVTYRALKLQTVKEFYLETILD 717
            L+ A +E+++    D +    RK  I   +A+  A D    GLAKE+CDR R ++D +R  M ++FN S   DR  +LLD +++ + K +   I+HE  VEF+ LFF  +ESI+ R     N         LEY   ATPS M  AR ++EKHAS+IA   G CF +K  KK R + NL+ +      T ++G + V F     D L  SL S + E   FL+ ++A +  S   P  T   +KL + K F LE +LD
Sbjct:   17 LTKACMEFMKAEVFDKDPASDRKARIAFCVAMSIATDRAQTGLAKEICDRLRKVEDLNRHLMVEVFNLSIVTDRVCILLDDVIIHR-KHVSKDIQHELCVEFVLLFFGIVESILRRGHHHGNNNHDFAFGELEYATSATPSDMTNARDILEKHASAIAAMCGPCFKLKALKKSRPRLNLFPAHGAPPQTTTLGTDPVDFAGCGFDVLTSSLLSNSKETDTFLDIIFAIVSLSHKTPADTLETIKLNSTKTFLLENVLD 273          
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5JWP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.180e-17
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   79 MYIAVLKA------QDSDGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKAT 381
            M++AV+ A      +   GL KE+CDRFR L DFDR  MT++F+ S  NDR ++LL+  +V + K I   I HEF VEF+ LFF  +E++V   + L +  ++D AT
Sbjct:    1 MHVAVIVATSMATGEAERGLDKEICDRFRRLQDFDRKVMTELFHLSIVNDRVRVLLEDALVRRKKTIGIDIRHEFSVEFVLLFFGVVENVVRTGRRLGDQGHIDIAT 107          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q8QNC8_ESV1K4.510e-5542.75EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPH6_ECTSI6.140e-5140.39EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJK7_9PHAE2.800e-4742.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVG0_9PHAE1.190e-3936.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2L9_9PHAE5.140e-3942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFF2_9PHAE1.810e-3636.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP0_9PHAE3.180e-1742.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1169contigP-littoralis_Contig1169:59236..59966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size717
Hectar predicted targeting categoryother localisation
Exons2
Cds size717
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.2728121-CDS-P-littoralis_Contig1169:59235..597351680789486.2728121-CDS-P-littoralis_Contig1169:59235..59735Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 59236..59735 +
1680789486.283314-CDS-P-littoralis_Contig1169:59749..599661680789486.283314-CDS-P-littoralis_Contig1169:59749..59966Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 59750..59966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1169.25.1prot_P-littoralis_Contig1169.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1169 59236..59966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1169.25.1

>prot_P-littoralis_Contig1169.25.1 ID=prot_P-littoralis_Contig1169.25.1|Name=mRNA_P-littoralis_Contig1169.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp
LSLAAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDSDGLAKEVCDRFRC
LDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFI
SLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFG
SCFNVKTFKKPRAQNNLWASTVSIGCELVKFDEATVDTLKVSLSETNEKY
EFLETMYAAMMHSSNEPGVTYRALKLQTVKEFYLETILD
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mRNA from alignment at P-littoralis_Contig1169:59236..59966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1169.25.1 ID=mRNA_P-littoralis_Contig1169.25.1|Name=mRNA_P-littoralis_Contig1169.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=731bp|location=Sequence derived from alignment at P-littoralis_Contig1169:59236..59966+ (Pylaiella littoralis U1_48)
TTGAGTTTGGCTGCGGTGGAGTATCTCCGACGGGGTTTTGCCGACCACAA CACTTTTGTTCGCAAGATTAACATCGACATGTATATCGCGGTGTTGAAGG CTCAGGACAGCGACGGTCTGGCCAAAGAGGTTTGCGATCGCTTCCGGTGC CTTGACGACTTCGACCGAGGCGCGATGACAAAGATTTTCAACTTCTCCAC CTGCAACGACAGAACTAAGCTTCTCCTGGATAAGATCATGGTTCTGAAGA CCAAAAGGATACACCCGGCCATCGAACACGAGTTCCAAGTCGAGTTCATC TCGTTGTTCTTCGACGCCATGGAGAGCATTGTGTCTCGCGAGCAGCCTTT GACCAACCTGGAGTATGTGGACAAGGCAACGCCTTCCCAGATGGAAGGTG CTCGAGGAGTCATCGAGAAACACGCATCAAGCATCGCCACGAAGTTTGGG TCATGTTTCAATGTAAAGACATTCAAGAAGCCGCGTGCTCAAAACAATCT GTTTCCAGCGCGAGGTGGGCTTCCACGGTATCTATCGGGTGCGAGCTCGT GAAATTCGACGAAGCCACGGTCGACACTCTGAAAGTCAGTCTCTCCGAGA CAAATGAGAAGTATGAGTTCCTGGAGACCATGTACGCCGCGATGATGCAT TCGTCTAACGAGCCGGGTGTGACTTATCGAGCGCTGAAGCTTCAAACTGT CAAGGAATTCTACCTTGAAACGATTCTCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1169:59236..59966+

>mRNA_P-littoralis_Contig1169.25.1 ID=mRNA_P-littoralis_Contig1169.25.1|Name=mRNA_P-littoralis_Contig1169.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig1169:59236..59966+ (Pylaiella littoralis U1_48)
TTGAGTTTGGCTGCGGTGGAGTATCTCCGACGGGGTTTTGCCGACCACAA
CACTTTTGTTCGCAAGATTAACATCGACATGTATATCGCGGTGTTGAAGG
CTCAGGACAGCGACGGTCTGGCCAAAGAGGTTTGCGATCGCTTCCGGTGC
CTTGACGACTTCGACCGAGGCGCGATGACAAAGATTTTCAACTTCTCCAC
CTGCAACGACAGAACTAAGCTTCTCCTGGATAAGATCATGGTTCTGAAGA
CCAAAAGGATACACCCGGCCATCGAACACGAGTTCCAAGTCGAGTTCATC
TCGTTGTTCTTCGACGCCATGGAGAGCATTGTGTCTCGCGAGCAGCCTTT
GACCAACCTGGAGTATGTGGACAAGGCAACGCCTTCCCAGATGGAAGGTG
CTCGAGGAGTCATCGAGAAACACGCATCAAGCATCGCCACGAAGTTTGGG
TCATGTTTCAATGTAAAGACATTCAAGAAGCCGCGTGCTCAAAACAATCT
GTGGGCTTCCACGGTATCTATCGGGTGCGAGCTCGTGAAATTCGACGAAG
CCACGGTCGACACTCTGAAAGTCAGTCTCTCCGAGACAAATGAGAAGTAT
GAGTTCCTGGAGACCATGTACGCCGCGATGATGCATTCGTCTAACGAGCC
GGGTGTGACTTATCGAGCGCTGAAGCTTCAAACTGTCAAGGAATTCTACC
TTGAAACGATTCTCGAC
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