mRNA_P-littoralis_Contig658.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig658.9.1
Unique NamemRNA_P-littoralis_Contig658.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig658.9.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.670e-22
Identity = 55/81 (67.90%), Postives = 60/81 (74.07%), Query Frame = 3 
Query:  273 KLFRFGRHRATQSTLAKIADKYMGKVGAACRVMLFGKASFRTQKGRAFAPRKAMVREMANR*LVLMISE*RIKNGEPGVVE 515
            K  RF R RATQ TLAKIADKYMG VG  CRVMLFGKASFR QKGRA APRKA++REMA+R +VLM+ E       PG  E
Sbjct:  656 KFLRFDRFRATQKTLAKIADKYMGHVGDPCRVMLFGKASFRAQKGRASAPRKALIREMASRGVVLMVEEYNTSKKCPGCGE 736
[Close]
BLAST of mRNA_P-littoralis_Contig658.9.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC)

HSP 1 Score: 99.0 bits (245), Expect = 6.740e-21
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 3 
Query:  273 KLFRFGRHRATQSTLAKIADKYMGKVGAACRVMLFGKASFRTQKGRAFAPRKAMVREMANR*LVLMISE*RIKNGEPGVVE 515
            +  RFGRHRATQS LA+IAD++MG VG  CRVMLFGKASF  +KGRA APRK ++REMA R +VLM++E       PG +E
Sbjct:  626 RFLRFGRHRATQSILARIADRFMGHVGDICRVMLFGKASFSAKKGRASAPRKRLIREMAARGVVLMVNEYNTSKQCPGCLE 706
[Close]
BLAST of mRNA_P-littoralis_Contig658.9.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54)

HSP 1 Score: 98.2 bits (243), Expect = 1.250e-20
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 3 
Query:  273 KLFRFGRHRATQSTLAKIADKYMGKVGAACRVMLFGKASFRTQKGRAFAPRKAMVREMANR*LVLMISE*RIKNGEPGVVE 515
            K  RF R RATQ TLA IADKYMG V   CRVMLFGKASFR QKGRA APRKA++REMA+R +VLM++E       PG  E
Sbjct:  617 KFMRFDRFRATQKTLALIADKYMGHVEDTCRVMLFGKASFRAQKGRASAPRKALIREMASRGVVLMVNEYNTSKMCPGCGE 697
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig658.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JA56_9PHAE1.670e-2267.90DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
Q6XLT6_9PHYC6.740e-2161.73FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a ... [more]
UPI0000161E541.250e-2065.43EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig658contigP-littoralis_Contig658:57237..57757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size521
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.5505521-UTR-P-littoralis_Contig658:57236..575051680791371.5505521-UTR-P-littoralis_Contig658:57236..57505Pylaiella littoralis U1_48UTRP-littoralis_Contig658 57237..57505 +
1680791371.5715644-UTR-P-littoralis_Contig658:57694..577571680791371.5715644-UTR-P-littoralis_Contig658:57694..57757Pylaiella littoralis U1_48UTRP-littoralis_Contig658 57695..57757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.5608451-CDS-P-littoralis_Contig658:57505..576941680791371.5608451-CDS-P-littoralis_Contig658:57505..57694Pylaiella littoralis U1_48CDSP-littoralis_Contig658 57506..57694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig658.9.1prot_P-littoralis_Contig658.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig658 57506..57694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig658.9.1

>prot_P-littoralis_Contig658.9.1 ID=prot_P-littoralis_Contig658.9.1|Name=mRNA_P-littoralis_Contig658.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MKLFRFGRHRATQSTLAKIADKYMGKVGAACRVMLFGKASFRTQKGRAFA
PRKAMVREMANR*
back to top

mRNA from alignment at P-littoralis_Contig658:57237..57757+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig658.9.1 ID=mRNA_P-littoralis_Contig658.9.1|Name=mRNA_P-littoralis_Contig658.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=521bp|location=Sequence derived from alignment at P-littoralis_Contig658:57237..57757+ (Pylaiella littoralis U1_48)
AAAAGATCAGGTCGAAGGCGCGGTAATGGTAGCTGCGTTGTAGATTATTC
CGAAGCATTAGATTTTCGAGATTGATGTCAATAGCAGACCTTTAAGGTGC
TACGCAGTAGACGATAATGCTGTGATAAACACGTAAGGCCTGTCGACTGA
AAATCGGATAAGGGTTCAGTTGCATTGCGTTAGGGTGCTAAGGGATAGGG
TTTCTTCACTTTTTTAGATTTCTCGGCGGGTGTCTTGGGAAGTCGTTCTT
CCAACTGTTGGGTTGTTATATGAAGCTCTTTCGGTTTGGACGCCACAGGG
CTACGCAATCGACTCTAGCAAAGATAGCGGACAAGTACATGGGCAAAGTG
GGGGCGGCATGTAGGGTCATGTTGTTTGGTAAGGCGTCGTTCCGTACCCA
AAAGGGGAGAGCGTTTGCCCCAAGAAAGGCCATGGTAAGGGAGATGGCTA
ACAGATAGTTGGTGTTGATGATAAGTGAGTAGAGGATAAAGAACGGAGAA
CCCGGAGTTGTAGAAACTTTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig658:57237..57757+

>mRNA_P-littoralis_Contig658.9.1 ID=mRNA_P-littoralis_Contig658.9.1|Name=mRNA_P-littoralis_Contig658.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig658:57237..57757+ (Pylaiella littoralis U1_48)
ATGAAGCTCTTTCGGTTTGGACGCCACAGGGCTACGCAATCGACTCTAGC
AAAGATAGCGGACAAGTACATGGGCAAAGTGGGGGCGGCATGTAGGGTCA
TGTTGTTTGGTAAGGCGTCGTTCCGTACCCAAAAGGGGAGAGCGTTTGCC
CCAAGAAAGGCCATGGTAAGGGAGATGGCTAACAGATAG
back to top