mRNA_P-littoralis_Contig1169.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1169.22.1
Unique NamemRNA_P-littoralis_Contig1169.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1169.22.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 2.940e-73
Identity = 121/197 (61.42%), Postives = 146/197 (74.11%), Query Frame = 1
Query:  274 TILRHGGNRDHKKRKRAEKSSTINIXXXXXXXXXNKINPTFVNSIGQESLDHITPEFILELLAERHGPGVIFEFGTKMYSVQENMNFKTDVKSGFVSGPVGDDSAWVTHRKNEGFSILLDNLKDKTEEAVQKYVDRIPEEDADNFELDMSYIKKISDLQEEEPMYSKFIRDGFNVLAANINHKTKMTGCDTGKKLKL 864
            ++L  GG+R HK RKRAEK++   +                VN IG+ESLDHITPE I ELLA  HGP VIF FG K+Y+++ENMNFKTDVKSGF+SG + +DSAWVT RK  GFS+LL+NLKD  EEAVQ YVD+IP +D +NFELDMSYI+KI DLQE+ P+Y KFIRDGFNVLA+N+  K +    DTGKKLKL
Sbjct:  106 SMLLXGGSRAHKNRKRAEKTAVTLV---------------IVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLEEDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQEDMPVYRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287          
BLAST of mRNA_P-littoralis_Contig1169.22.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.580e-23
Identity = 80/286 (27.97%), Postives = 135/286 (47.20%), Query Frame = 1
Query:   22 HPKLRIRISPTCVDCETLDNVIRSNYDKPVYCGIHSVAGDIYVYIHNRE---RMSSIVLTKLLHDILHILEITKFSLFEGPIMDSTGTILRHGGNRDHKKRKRAEKSSTINIXXXXXXXXXNKINPTFVNSIGQESLDHITPEFILELLAERHGPGVIFEFGTKMYSVQENMNFKTDVKSGFVSGPVGDDSAWVTHRKNEGFSILLDNLKDKTEEAVQKYVDRIPEEDADNFELDMSYIK--KISDLQEEEPMYSKFIRDGFNVLAANINHKTKMTGCDTGKKLKL 864
            H KL +R  P+CVD   L   + +     +   I    G +  Y+ N E   R +   LT+L    + +  I+ +S+ EG + +              KKRKRA  +                     VN +G+ESL HIT E++++LL +    GV F+FG K+YS+ +N+NF+T  +  +    V     W+T  K+E +  +L  L +KT EAV+ Y D + E D ++F + +  +   + S + E + +Y K    G + +A ++N +    G   GK++ L
Sbjct:    5 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEW-----------RKKRKRASSTGATADTCTI-----------LVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRT--RKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTL 266          
BLAST of mRNA_P-littoralis_Contig1169.22.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 107 bits (266), Expect = 5.680e-23
Identity = 83/287 (28.92%), Postives = 137/287 (47.74%), Query Frame = 1
Query:   16 INHPKLRIRISPTCVDCETLDNVIRSNYDKPVYCGIHSVAGDIYVYIHNRERMSSIVLTKLLHDILHILEITKFSLFEGPIMDSTGTILRHGGNRDHKKRKRAE-KSSTINIXXXXXXXXXNKINPTFVNSIGQESLDHITPEFILELLAERHGPGVIFEFGTKMYSVQENMNFKTDVKSGFVSGPVG-DDSAWVTHRKNEGFSILLDNLKDKTEEAVQKYVDRIPEEDADNFEL--DMSYIKKISDLQEEEPMYSKFIRDGFNVLAANINHKTKMTGCDTGKKLKL 864
            + + KL IR + +C D  T+   +R+   K +Y GI    G +YVY+   ERMS  +LTK L   + I+ I   S ++ P+    G +      +  +  K+ E K+ T  +               FVN +G+ESL HIT  ++ +LL    G  V ++FG K+YS+ +N+NF+   + G  +  V      W+T  ++E +  +L  L +KT EAV  +   IP    D+F++  D     K S + E+  +Y +      N +A ++       G  + KK KL
Sbjct:  101 LRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHI---STYDAPV----GELQEEWRAKPVRGNKKVEVKADTTAV---------------FVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRA--RKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKL 363          
BLAST of mRNA_P-littoralis_Contig1169.22.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.480e-22
Identity = 79/284 (27.82%), Postives = 134/284 (47.18%), Query Frame = 1
Query:   28 KLRIRISPTCVDCETLDNVIRSNYDKPVYCGIHSVAGDIYVYIHNRE---RMSSIVLTKLLHDILHILEITKFSLFEGPIMDSTGTILRHGGNRDHKKRKRAEKSSTINIXXXXXXXXXNKINPTFVNSIGQESLDHITPEFILELLAERHGPGVIFEFGTKMYSVQENMNFKTDVKSGFVSGPVGDDSAWVTHRKNEGFSILLDNLKDKTEEAVQKYVDRIPEEDADNFELDMSYIKKISD--LQEEEPMYSKFIRDGFNVLAANINHKTKMTGCDTGKKLKL 864
            KL +R  P+CVD   L   + +     +   I    G +  Y+ N E   R +   LT+L    + +  I+ +S+ EG + +              KKRKRA  +                     VN +G+ESL HIT E++++LL +    GV F+FG K+YS+ +N+NF+T  +  +    V     W+T  K+E +  +L  L +KT EAV+ Y D + E D ++F + +  + +  D  + E + +Y K    G + +A ++N +    G   GK++ L
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEW-----------RKKRKRASSTGATADTCTI-----------LVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRT--RKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKRVTL 2394          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1169.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWA4_9PHAE2.940e-7361.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE4.580e-2327.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
Q8QN59_ESV1K5.680e-2328.92EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JH58_9PHAE6.480e-2227.82Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1169contigP-littoralis_Contig1169:56645..57514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size870
Hectar predicted targeting categoryother localisation
Exons1
Cds size870
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.2398016-CDS-P-littoralis_Contig1169:56644..575141680789486.2398016-CDS-P-littoralis_Contig1169:56644..57514Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 56645..57514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1169.22.1prot_P-littoralis_Contig1169.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1169 56645..57514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1169.22.1

>prot_P-littoralis_Contig1169.22.1 ID=prot_P-littoralis_Contig1169.22.1|Name=mRNA_P-littoralis_Contig1169.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp
MKNTRINHPKLRIRISPTCVDCETLDNVIRSNYDKPVYCGIHSVAGDIYV
YIHNRERMSSIVLTKLLHDILHILEITKFSLFEGPIMDSTGTILRHGGNR
DHKKRKRAEKSSTINITNNTNNINNNKINPTFVNSIGQESLDHITPEFIL
ELLAERHGPGVIFEFGTKMYSVQENMNFKTDVKSGFVSGPVGDDSAWVTH
RKNEGFSILLDNLKDKTEEAVQKYVDRIPEEDADNFELDMSYIKKISDLQ
EEEPMYSKFIRDGFNVLAANINHKTKMTGCDTGKKLKLF*
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mRNA from alignment at P-littoralis_Contig1169:56645..57514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1169.22.1 ID=mRNA_P-littoralis_Contig1169.22.1|Name=mRNA_P-littoralis_Contig1169.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig1169:56645..57514- (Pylaiella littoralis U1_48)
ATGAAGAACACAAGGATCAATCACCCCAAATTGAGGATTAGAATATCACC TACATGCGTGGATTGTGAGACTCTGGACAATGTAATCAGGTCCAATTACG ACAAACCAGTTTACTGTGGAATACACTCCGTAGCTGGCGACATTTATGTT TACATCCACAATCGAGAAAGAATGTCTTCGATTGTTTTGACGAAGCTCCT GCATGACATACTGCATATCCTGGAAATTACGAAATTCTCTTTATTTGAAG GCCCAATCATGGATAGCACCGGGACTATTCTTAGACACGGTGGCAACAGG GATCACAAGAAGCGGAAGCGTGCTGAGAAATCATCGACAATCAACATCAC GAACAACACTAACAACATCAACAACAACAAGATCAACCCCACCTTCGTCA ACTCCATTGGCCAAGAGTCTCTGGACCATATCACCCCCGAGTTCATCCTG GAATTGCTCGCCGAGCGCCACGGCCCCGGAGTGATTTTTGAGTTCGGCAC CAAGATGTACTCAGTACAAGAGAACATGAACTTTAAGACCGATGTAAAAA GCGGGTTCGTCAGTGGTCCCGTGGGGGATGACAGCGCGTGGGTGACTCAC AGGAAGAACGAGGGTTTCTCGATACTGCTCGACAATCTAAAGGACAAGAC GGAGGAGGCCGTTCAGAAGTACGTGGACAGGATCCCCGAAGAAGATGCAG ACAATTTCGAGCTGGACATGAGCTACATCAAGAAGATCTCCGATTTGCAG GAGGAAGAACCAATGTACAGCAAATTCATTCGCGATGGTTTTAACGTGTT GGCGGCCAATATCAACCACAAAACAAAAATGACCGGATGTGACACGGGTA AGAAGTTGAAGCTGTTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1169:56645..57514-

>mRNA_P-littoralis_Contig1169.22.1 ID=mRNA_P-littoralis_Contig1169.22.1|Name=mRNA_P-littoralis_Contig1169.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig1169:56645..57514- (Pylaiella littoralis U1_48)
ATGAAGAACACAAGGATCAATCACCCCAAATTGAGGATTAGAATATCACC
TACATGCGTGGATTGTGAGACTCTGGACAATGTAATCAGGTCCAATTACG
ACAAACCAGTTTACTGTGGAATACACTCCGTAGCTGGCGACATTTATGTT
TACATCCACAATCGAGAAAGAATGTCTTCGATTGTTTTGACGAAGCTCCT
GCATGACATACTGCATATCCTGGAAATTACGAAATTCTCTTTATTTGAAG
GCCCAATCATGGATAGCACCGGGACTATTCTTAGACACGGTGGCAACAGG
GATCACAAGAAGCGGAAGCGTGCTGAGAAATCATCGACAATCAACATCAC
GAACAACACTAACAACATCAACAACAACAAGATCAACCCCACCTTCGTCA
ACTCCATTGGCCAAGAGTCTCTGGACCATATCACCCCCGAGTTCATCCTG
GAATTGCTCGCCGAGCGCCACGGCCCCGGAGTGATTTTTGAGTTCGGCAC
CAAGATGTACTCAGTACAAGAGAACATGAACTTTAAGACCGATGTAAAAA
GCGGGTTCGTCAGTGGTCCCGTGGGGGATGACAGCGCGTGGGTGACTCAC
AGGAAGAACGAGGGTTTCTCGATACTGCTCGACAATCTAAAGGACAAGAC
GGAGGAGGCCGTTCAGAAGTACGTGGACAGGATCCCCGAAGAAGATGCAG
ACAATTTCGAGCTGGACATGAGCTACATCAAGAAGATCTCCGATTTGCAG
GAGGAAGAACCAATGTACAGCAAATTCATTCGCGATGGTTTTAACGTGTT
GGCGGCCAATATCAACCACAAAACAAAAATGACCGGATGTGACACGGGTA
AGAAGTTGAAGCTGTTCTAA
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