mRNA_P-littoralis_Contig657.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig657.4.1
Unique NamemRNA_P-littoralis_Contig657.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig657.4.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.190e-31
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:   10 LRGIQRVHVHVRTPRRVHLPMSLEVLLSGQALVPSWGQGGRILWLCLALSYFLVARSEEIFASASGGIHAIHCLRRDDVTFLAEEKALPPLHWHKAT 300
            L G+ RVHV   T  R  +P+S E LL GQ L  SWG GGR LWL LALSYFLVARS+E+FA+ SG  H +HCLRR DV F   E  L  LHWHKAT
Sbjct:   39 LLGVARVHVRAGTKSRNRVPVSWETLLEGQQLTASWGTGGRALWLWLALSYFLVARSDEVFATLSGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKAT 135
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BLAST of mRNA_P-littoralis_Contig657.4.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.970e-29
Identity = 57/97 (58.76%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:   10 LRGIQRVHVHVRTPRRVHLPMSLEVLLSGQALVPSWGQGGRILWLCLALSYFLVARSEEIFASASGGIHAIHCLRRDDVTFLAEEKALPPLHWHKAT 300
            L G  RVHV   T  R  +P+S E LL GQ L  SWG GGR+LWLCL LSYF VARS+E+ A+ SG  H +HCLRR DV F   E  L  LHWHKAT
Sbjct:  656 LLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKAT 752
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BLAST of mRNA_P-littoralis_Contig657.4.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.420e-11
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   13 RGIQRVHVHVRTPRRVHLPMSLEVLLSGQALVPSWGQGGRILWLCLALSYFLVARSEEIFASASGGIHAIHCLRRDDVTF 252
            +GI R+   V    +V LP++  +L  G   V  + +GGR++WL LAL+YFL+ R+ E+FA A G +H   CL R+ +TF
Sbjct:   95 KGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSLTF 174
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BLAST of mRNA_P-littoralis_Contig657.4.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.890e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   46 TPRRVHLPMSLEVLLSGQALVPSWGQGGRILWLCLALSYFLVARSEEIFASASGGIHAIHCLRRDDVTFL-AEEKALPPLHWHKA 297
            T  R+  P+S  +L SG     +WG+GGR+LWL LA+SYF + R  EIFA  +G IH    + R +V F   E++ L P  W  A
Sbjct:  114 TESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVAFWKGEQQLLTPALWRCA 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig657.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K718_9PHAE2.190e-3160.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP7_9PHAE4.970e-2958.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK3_9PHAE1.420e-1141.25Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDR9_9PHAE2.890e-1142.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig657contigP-littoralis_Contig657:44105..44408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791370.7240942-CDS-P-littoralis_Contig657:44104..444071680791370.7240942-CDS-P-littoralis_Contig657:44104..44407Pylaiella littoralis U1_48CDSP-littoralis_Contig657 44105..44407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig657.4.1prot_P-littoralis_Contig657.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig657 44105..44407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig657.4.1

>prot_P-littoralis_Contig657.4.1 ID=prot_P-littoralis_Contig657.4.1|Name=mRNA_P-littoralis_Contig657.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
NRELRGIQRVHVHVRTPRRVHLPMSLEVLLSGQALVPSWGQGGRILWLCL
ALSYFLVARSEEIFASASGGIHAIHCLRRDDVTFLAEEKALPPLHWHKAT
M
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mRNA from alignment at P-littoralis_Contig657:44105..44408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig657.4.1 ID=mRNA_P-littoralis_Contig657.4.1|Name=mRNA_P-littoralis_Contig657.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=304bp|location=Sequence derived from alignment at P-littoralis_Contig657:44105..44408+ (Pylaiella littoralis U1_48)
AATCGCGAACTCCGAGGTATTCAACGCGTACACGTACACGTACGCACACC
GAGACGGGTTCACCTCCCGATGTCGTTGGAGGTGTTGCTGAGCGGCCAAG
CTTTGGTACCGTCGTGGGGGCAGGGGGGGAGGATTCTATGGCTTTGCCTC
GCCCTTTCCTACTTCCTAGTGGCACGTTCGGAGGAGATTTTTGCGTCGGC
TTCGGGGGGAATTCACGCGATTCATTGCTTGCGTAGAGACGATGTCACGT
TCCTTGCCGAGGAAAAAGCACTGCCACCGTTGCACTGGCACAAGGCCACT
ATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig657:44105..44408+

>mRNA_P-littoralis_Contig657.4.1 ID=mRNA_P-littoralis_Contig657.4.1|Name=mRNA_P-littoralis_Contig657.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig657:44105..44408+ (Pylaiella littoralis U1_48)
AATCGCGAACTCCGAGGTATTCAACGCGTACACGTACACGTACGCACACC
GAGACGGGTTCACCTCCCGATGTCGTTGGAGGTGTTGCTGAGCGGCCAAG
CTTTGGTACCGTCGTGGGGGCAGGGGGGGAGGATTCTATGGCTTTGCCTC
GCCCTTTCCTACTTCCTAGTGGCACGTTCGGAGGAGATTTTTGCGTCGGC
TTCGGGGGGAATTCACGCGATTCATTGCTTGCGTAGAGACGATGTCACGT
TCCTTGCCGAGGAAAAAGCACTGCCACCGTTGCACTGGCACAAGGCCACT
ATG
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