mRNA_P-littoralis_Contig657.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig657.5.1
Unique NamemRNA_P-littoralis_Contig657.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig657.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig657contigP-littoralis_Contig657:57647..58263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size617
Hectar predicted targeting categoryother localisation
Exons1
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791370.4851635-UTR-P-littoralis_Contig657:57646..577651680791370.4851635-UTR-P-littoralis_Contig657:57646..57765Pylaiella littoralis U1_48UTRP-littoralis_Contig657 57647..57765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791370.4955716-CDS-P-littoralis_Contig657:57765..582631680791370.4955716-CDS-P-littoralis_Contig657:57765..58263Pylaiella littoralis U1_48CDSP-littoralis_Contig657 57766..58263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig657.5.1prot_P-littoralis_Contig657.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig657 57766..58263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig657.5.1

>prot_P-littoralis_Contig657.5.1 ID=prot_P-littoralis_Contig657.5.1|Name=mRNA_P-littoralis_Contig657.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MRCYSPSGPGVRYTLNDLCTGRTYTGLLMRERADLLQFLIHQYHCVDWTC
NKPRVQDPEWEGMWASDWQGNWQQLDDFWHQNFRTLLSDVEKEVFLQLLD
NERATAGRADAARQGSASASRNETAVTPTAVVADEMDSMAGGCLSCAVVV
AHAAKDKENSAKQPVV
back to top

mRNA from alignment at P-littoralis_Contig657:57647..58263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig657.5.1 ID=mRNA_P-littoralis_Contig657.5.1|Name=mRNA_P-littoralis_Contig657.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=617bp|location=Sequence derived from alignment at P-littoralis_Contig657:57647..58263+ (Pylaiella littoralis U1_48)
AGCAACCAAGACGGCTGGTTTCGACCGTAACTCTGTCATACGTGTGAGCG
CATCCATGGTGCGACAGCAAGGTGCGAGTGTTGGACCTGCGTACGTTGAT
AGCCCATGCGGTGGAATGAATGCGGTGCTACTCGCCGTCCGGACCGGGGG
TCCGCTACACTTTGAACGATCTCTGCACCGGTCGCACTTACACAGGTCTG
CTGATGCGTGAAAGAGCGGATCTTCTCCAATTCCTGATCCATCAGTACCA
CTGCGTAGACTGGACGTGCAACAAGCCTCGAGTGCAGGATCCGGAGTGGG
AAGGGATGTGGGCCAGCGATTGGCAAGGAAACTGGCAGCAGCTGGACGAT
TTCTGGCATCAAAATTTTCGCACGCTCTTGTCGGATGTGGAGAAGGAAGT
TTTTCTGCAGCTGCTTGATAACGAAAGAGCAACGGCTGGGCGCGCGGATG
CGGCCAGACAGGGTTCGGCTTCGGCGAGTCGAAACGAGACAGCAGTGACG
CCCACAGCAGTAGTAGCAGACGAAATGGACTCAATGGCGGGCGGGTGTCT
TTCGTGTGCGGTGGTTGTGGCGCACGCGGCCAAGGACAAGGAAAACTCGG
CCAAGCAGCCGGTGGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig657:57647..58263+

>mRNA_P-littoralis_Contig657.5.1 ID=mRNA_P-littoralis_Contig657.5.1|Name=mRNA_P-littoralis_Contig657.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig657:57647..58263+ (Pylaiella littoralis U1_48)
ATGCGGTGCTACTCGCCGTCCGGACCGGGGGTCCGCTACACTTTGAACGA
TCTCTGCACCGGTCGCACTTACACAGGTCTGCTGATGCGTGAAAGAGCGG
ATCTTCTCCAATTCCTGATCCATCAGTACCACTGCGTAGACTGGACGTGC
AACAAGCCTCGAGTGCAGGATCCGGAGTGGGAAGGGATGTGGGCCAGCGA
TTGGCAAGGAAACTGGCAGCAGCTGGACGATTTCTGGCATCAAAATTTTC
GCACGCTCTTGTCGGATGTGGAGAAGGAAGTTTTTCTGCAGCTGCTTGAT
AACGAAAGAGCAACGGCTGGGCGCGCGGATGCGGCCAGACAGGGTTCGGC
TTCGGCGAGTCGAAACGAGACAGCAGTGACGCCCACAGCAGTAGTAGCAG
ACGAAATGGACTCAATGGCGGGCGGGTGTCTTTCGTGTGCGGTGGTTGTG
GCGCACGCGGCCAAGGACAAGGAAAACTCGGCCAAGCAGCCGGTGGTG
back to top