mRNA_P-littoralis_Contig656.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig656.4.1
Unique NamemRNA_P-littoralis_Contig656.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig656.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig656contigP-littoralis_Contig656:45912..46466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size283
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791369.9205148-UTR-P-littoralis_Contig656:45911..459381680791369.9205148-UTR-P-littoralis_Contig656:45911..45938Pylaiella littoralis U1_48UTRP-littoralis_Contig656 45912..45938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791369.9337454-CDS-P-littoralis_Contig656:45938..460721680791369.9337454-CDS-P-littoralis_Contig656:45938..46072Pylaiella littoralis U1_48CDSP-littoralis_Contig656 45939..46072 +
1680791369.950212-CDS-P-littoralis_Contig656:46345..464661680791369.950212-CDS-P-littoralis_Contig656:46345..46466Pylaiella littoralis U1_48CDSP-littoralis_Contig656 46346..46466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig656.4.1prot_P-littoralis_Contig656.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig656 45939..46466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig656.4.1

>prot_P-littoralis_Contig656.4.1 ID=prot_P-littoralis_Contig656.4.1|Name=mRNA_P-littoralis_Contig656.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MSRKESGGWGSLYHSNGRSLLATMTLIGHITQGIRLERARSVAARNKSTH
SWPHRRSARGGLQEACKHPQDPQGQGAQAGQGLIL
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mRNA from alignment at P-littoralis_Contig656:45912..46466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig656.4.1 ID=mRNA_P-littoralis_Contig656.4.1|Name=mRNA_P-littoralis_Contig656.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig656:45912..46466+ (Pylaiella littoralis U1_48)
AAGGAGACTCGCACTACAATCTGGTACATGTCCAGGAAGGAGAGCGGCGG
ATGGGGCTCGCTGTATCACTCGAATGGTCGGTCGCTCCTCGCCACAATGA
CGCTGATTGGTCACATCACACAGGGGATTCGGCTTGAACGAGCAAGATCT
GTGGCAGCCAGGTCAGTTTGGGACTTTATTTCAGATGAAAAGAATGTTCG
ATTTTCTGTTCAAATTAAAGAAGAAGTTTATAATTTGTTTTTCATCATAT
TCTCGAGTGACCGTCCACCTTCAAGTCGATGGCTCCCTCTCGCCCCCCAT
CTCACTCTGCCACCTCGCCTTTCCGGACACACCACCCTCGACCTTACTGC
CTTGTTATGCGCCAACACCCGACACCATGATGTCTTCCTCAACTTCCTCC
GCCCGCGCGCTCACCACTCTTCCCATGAACGGAGAAATAAGTCGACGCAC
TCGTGGCCGCACCGCCGCTCAGCTAGGGGGGGCCTCCAAGAGGCCTGCAA
GCACCCACAAGACCCCCAAGGGCAAGGGGCCCAAGCGGGGCAAGGCCTCA
TCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig656:45912..46466+

>mRNA_P-littoralis_Contig656.4.1 ID=mRNA_P-littoralis_Contig656.4.1|Name=mRNA_P-littoralis_Contig656.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig656:45912..46466+ (Pylaiella littoralis U1_48)
ATGTCCAGGAAGGAGAGCGGCGGATGGGGCTCGCTGTATCACTCGAATGG
TCGGTCGCTCCTCGCCACAATGACGCTGATTGGTCACATCACACAGGGGA
TTCGGCTTGAACGAGCAAGATCTGTGGCAGCCAGAAATAAGTCGACGCAC
TCGTGGCCGCACCGCCGCTCAGCTAGGGGGGGCCTCCAAGAGGCCTGCAA
GCACCCACAAGACCCCCAAGGGCAAGGGGCCCAAGCGGGGCAAGGCCTCA
TCCTC
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