mRNA_P-littoralis_Contig1169.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1169.20.1
Unique NamemRNA_P-littoralis_Contig1169.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1169.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1169contigP-littoralis_Contig1169:54844..55334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size491
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.9963517-UTR-P-littoralis_Contig1169:54843..549061680789485.9963517-UTR-P-littoralis_Contig1169:54843..54906Pylaiella littoralis U1_48UTRP-littoralis_Contig1169 54844..54906 +
1680789486.028734-UTR-P-littoralis_Contig1169:55206..553341680789486.028734-UTR-P-littoralis_Contig1169:55206..55334Pylaiella littoralis U1_48UTRP-littoralis_Contig1169 55207..55334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.010599-CDS-P-littoralis_Contig1169:54906..552061680789486.010599-CDS-P-littoralis_Contig1169:54906..55206Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 54907..55206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1169.20.1prot_P-littoralis_Contig1169.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1169 54907..55206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1169.20.1

>prot_P-littoralis_Contig1169.20.1 ID=prot_P-littoralis_Contig1169.20.1|Name=mRNA_P-littoralis_Contig1169.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MNEWYAEYHARKRCGLRQKAAKADLRGPKVIYRRLLVPESDTRRSWSISD
ANRARMPRCNLVYRFVARNHGGIPLSERDASKGKRIVNIFGCVKVFFEN*
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mRNA from alignment at P-littoralis_Contig1169:54844..55334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1169.20.1 ID=mRNA_P-littoralis_Contig1169.20.1|Name=mRNA_P-littoralis_Contig1169.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=491bp|location=Sequence derived from alignment at P-littoralis_Contig1169:54844..55334+ (Pylaiella littoralis U1_48)
CCGCGGTTGATCGATGGTGTGACGTGTGATATGAAAGTGGGGGGGGGGCT
GTTCGGCGAATGAATGAATGAATGGTATGCGGAATATCACGCCAGAAAGC
GGTGTGGGTTACGCCAAAAAGCGGCGAAGGCCGACCTGAGAGGCCCAAAA
GTGATATACCGCCGGTTACTGGTGCCAGAAAGCGATACGAGGCGTAGTTG
GTCAATCAGCGACGCGAACAGGGCTCGAATGCCAAGGTGTAATTTGGTGT
ACCGCTTTGTGGCGCGGAACCATGGCGGTATACCGCTAAGCGAGCGCGAT
GCCTCTAAGGGAAAGAGAATTGTAAATATTTTTGGATGTGTGAAAGTTTT
TTTTGAAAATTGACTCGTAAAAAAAGATGCATTGCGCGATTCGGAGTTTT
CCTCCCGTATGCTCTTAGTTAGAGTAGCGCAAGTCACCCATCTCCTTTTG
GACACTTTTTGTACCAAACTTTCTTGCAGATCGGGGGGATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1169:54844..55334+

>mRNA_P-littoralis_Contig1169.20.1 ID=mRNA_P-littoralis_Contig1169.20.1|Name=mRNA_P-littoralis_Contig1169.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1169:54844..55334+ (Pylaiella littoralis U1_48)
ATGAATGAATGGTATGCGGAATATCACGCCAGAAAGCGGTGTGGGTTACG
CCAAAAAGCGGCGAAGGCCGACCTGAGAGGCCCAAAAGTGATATACCGCC
GGTTACTGGTGCCAGAAAGCGATACGAGGCGTAGTTGGTCAATCAGCGAC
GCGAACAGGGCTCGAATGCCAAGGTGTAATTTGGTGTACCGCTTTGTGGC
GCGGAACCATGGCGGTATACCGCTAAGCGAGCGCGATGCCTCTAAGGGAA
AGAGAATTGTAAATATTTTTGGATGTGTGAAAGTTTTTTTTGAAAATTGA
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