mRNA_P-littoralis_Contig655.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig655.9.1
Unique NamemRNA_P-littoralis_Contig655.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig655.9.1 vs. uniprot
Match: D7G5H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.540e-23
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MGVPVMVCHLGECLMDRALDCRWDDASGSQELFKAAASVEGVVELGYVGNLRPLSFLSET 180
            MGVPVM+CHL ECLMDRALDCRWD++  S ELFK AA  EGVV LGY+G+LRPL+F+SET
Sbjct:  771 MGVPVMICHLAECLMDRALDCRWDNSPASAELFKCAALKEGVVRLGYIGDLRPLTFISET 830
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig655.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5H7_ECTSI3.540e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig655contigP-littoralis_Contig655:86793..88020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size290
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791368.4427927-CDS-P-littoralis_Contig655:86792..869721680791368.4427927-CDS-P-littoralis_Contig655:86792..86972Pylaiella littoralis U1_48CDSP-littoralis_Contig655 86793..86972 +
1680791368.4532998-CDS-P-littoralis_Contig655:87912..880201680791368.4532998-CDS-P-littoralis_Contig655:87912..88020Pylaiella littoralis U1_48CDSP-littoralis_Contig655 87913..88020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig655.9.1prot_P-littoralis_Contig655.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig655 86793..88020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig655.9.1

>prot_P-littoralis_Contig655.9.1 ID=prot_P-littoralis_Contig655.9.1|Name=mRNA_P-littoralis_Contig655.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MGVPVMVCHLGECLMDRALDCRWDDASGSQELFKAAASVEGVVELGYVGN
LRPLSFLSETCQEDILHQMPILERACLLRMLAHGHGCIAKYSAAAG
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mRNA from alignment at P-littoralis_Contig655:86793..88020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig655.9.1 ID=mRNA_P-littoralis_Contig655.9.1|Name=mRNA_P-littoralis_Contig655.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1228bp|location=Sequence derived from alignment at P-littoralis_Contig655:86793..88020+ (Pylaiella littoralis U1_48)
ATGGGAGTCCCCGTGATGGTCTGCCACCTGGGCGAGTGTCTAATGGACCG
GGCTTTAGACTGCCGCTGGGATGATGCTAGCGGCAGCCAGGAGCTGTTCA
AGGCCGCCGCTTCTGTGGAGGGTGTGGTGGAACTGGGCTACGTGGGGAAC
CTGAGGCCGCTCAGCTTCCTCTCTGAGACGGTTCGTGTTCTTTAACTGGC
GCATAACCATCACCACGTCTGTGCAATCCTTTCTTGTGCACTATTCACGT
GCTACACAAGTCATCCATAAACCTGTAGGCGATATGTTTCTAGTCAAAAT
AAAATGTAGCTCTCAACAGCGGCGGCCGAAATCGGCACGGCGAGCTTGTA
TTTTCAATAGCAACACATGTTGTGCCGAGACTCCCGAAATTAATAACACC
GCGTTGGCCCGTAAGTTGCCCCGCCATGCACGATAAATTGCCCCGCCATG
CACGGTAAATTGCCCCGAAACATAGTGACTGGTTTCGTTGTTTCTCGTTC
AGATAGCGACCCTGTCAAAGTGGCACCCAGCCGCAGGGTAGGTAGATAGT
GTCACCCCTCTTCTGCCGTAGTTCGAGGACACGCCGGACATAAATGAAAT
TGTTTTGTCCGAATAAATTGCGACGAATTTTCTAGTTTTTTTCTCGGAGT
AAAAGAAAAAACCAAAAACCTTGACGATCAATCTCATGGAAGAACCCAAC
TTCCGCACTCTTCATTGAAATAGTGTAGCTGGTCATCTCATGGAAAGTAA
TACTGGTAAAAAACGGCTGCCAAGATCGGATATTCCCCTCCGATACCTTT
GTCGACGATGTTGCATGTTTTGGGAAACCGCGGTACAAACTATGTTATGG
TCGTTTTATGAACTTCTAGCAAGGAGAGAGATGCGAAGTAAAGGTTGAAA
AGAAAAACTGTTTCTCCATGCATGGTTGCGCCGGAAGACATCTCATTGCT
GTTAACGGTTCTAACCTGAGCAAAACATACCTCGGTTGCCGGCGCATTTT
CGGAGAGTTGCTTTCGATGGTTGATGTCTTACACACACACAAATAGGTCC
ATCGAGCAACAGTTTCTTATCCAAATTTCGACCTGCTGCTTCTCCTTCTG
CTGCTTGTTTGCGTCAACAGTGCCAAGAAGACATCCTGCATCAGATGCCT
ATCCTAGAGCGGGCGTGTCTGCTGCGGATGCTCGCTCACGGGCATGGGTG
CATCGCGAAGTACAGCGCTGCGGCGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig655:86793..88020+

>mRNA_P-littoralis_Contig655.9.1 ID=mRNA_P-littoralis_Contig655.9.1|Name=mRNA_P-littoralis_Contig655.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig655:86793..88020+ (Pylaiella littoralis U1_48)
ATGGGAGTCCCCGTGATGGTCTGCCACCTGGGCGAGTGTCTAATGGACCG
GGCTTTAGACTGCCGCTGGGATGATGCTAGCGGCAGCCAGGAGCTGTTCA
AGGCCGCCGCTTCTGTGGAGGGTGTGGTGGAACTGGGCTACGTGGGGAAC
CTGAGGCCGCTCAGCTTCCTCTCTGAGACGTGCCAAGAAGACATCCTGCA
TCAGATGCCTATCCTAGAGCGGGCGTGTCTGCTGCGGATGCTCGCTCACG
GGCATGGGTGCATCGCGAAGTACAGCGCTGCGGCGGGC
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