mRNA_P-littoralis_Contig654.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig654.38.1
Unique NamemRNA_P-littoralis_Contig654.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 4.490e-156
Identity = 206/282 (73.05%), Postives = 236/282 (83.69%), Query Frame = 1
Query:    1 QVLGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKL------YDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTV 828
            +VLGVLQVLGRGNCFADVA +SLMS+ TA+KSFHRFCDCF+ GLWHQWV LPEG+ LK+V   Y  +G PGAV S DCTH++W  C +SETN HKGKEGYT++V+EA CDH+GRI++STKG+PGAENDKTVVKRDLSV R++ EEPWASYK+ L+ L+G ++ HTGGWLIVDGGYHRV  L      Y   A QEWSKRFES+ KDIEC FGRLKGRFRLFKTGILF +REKIDNAWF ACIIHNML QFDGLANLEKD++W GKDGEAD+TTG FP  T V
Sbjct:  112 KVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFPVPTAV 393          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 446 bits (1147), Expect = 8.830e-153
Identity = 209/284 (73.59%), Postives = 231/284 (81.34%), Query Frame = 1
Query:    1 QVLGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVS------KLYDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGS 834
            +VLGVLQVLGRGNCFADVAN SLMS++TA++SFHRFC CF  GLW  W+RLPEG+ L++VES Y  LG+PGAVGS DCTHV WERCA+SET  HKGKEGYT+VVFEAICDHAGRI+ASTKGYPGAENDKTVV+RDLSV R++ EEPW SYKYE+Y   G  + HTGGWLI DGGYHRV       K+Y   A Q+WSKR ESV KDIEC FGRLKGRFRLFKTGILF  R KID+AWF ACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S
Sbjct:  210 KVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTGGWLIADGGYHRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADS 493          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 1.200e-140
Identity = 188/261 (72.03%), Postives = 210/261 (80.46%), Query Frame = 1
Query:   70 MSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVS------KLYDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGS 834
            MS++TA++SFHRFC CF  GLW  W+RLPEG+DL++VES Y  LG+PGAVGS DCTHV WERCA+SET  HKGKEGYT+VVFEAICDHAGRI+ASTKGYPGAENDKTVV+RDLSV R++ EEPW SYKYE+Y   G  + HTGGWLI +GGYHRV       K+Y   A Q+WSKR ESV KDIEC FGRLKGRFRLFKTGILF  R KID+AWF ACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S
Sbjct:    1 MSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTGGWLIAEGGYHRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADS 261          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 1.040e-121
Identity = 171/247 (69.23%), Postives = 189/247 (76.52%), Query Frame = 1
Query:    1 QVLGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVS------KLYDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNML 723
            QVLGVLQ LGRGNCFADVAN SLMS++TA++SFHRFC CF  GLW  W+RLPEG+DL++VES Y  LG+PGAVGS DCTHV WERCA+SET  HKGKEGYT+VVFEAICDHAGRI+ASTKGYPGAENDKTVV                 YKYE+Y   G  + HTGGWLI DGGYHRV       K+Y   A Q+WSKR ESV KD+EC FGRLKGRFRLFKTGILF  R KID+A F ACIIH ML
Sbjct:    5 QVLGVLQALGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVV----------------IYKYEMYDETGDVTKHTGGWLIADGGYHRVPLLICPFKVYANVAEQQWSKRLESVRKDMECLFGRLKGRFRLFKTGILFGDRTKIDDARFTACIIHTML 235          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 3.790e-95
Identity = 127/241 (52.70%), Postives = 170/241 (70.54%), Query Frame = 1
Query:   70 MSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKL------YDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTG 774
            MS +TA+KSFH FC+ F+  LW  WV+LP GD+LK+VE ++ + G+PGA+ S DCTH  W     SE  ++ GKEGY +VV EA CDH GRIIA+TK YPG+ENDKT+++RD S+ RI+ EEPW+S KY+LY  DG+ + + G WL+VDGGY ++  L      +      +WS+R ES+ KDIEC +GR+KGRFRLFK GIL+ +R+ IDN WF ACI+HNML  +D L  + +   W G
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAISSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEATCDHTGRIIAATKSYPGSENDKTIIQRDKSIWRIRDEEPWSSLKYKLYNADGSETEYKGAWLVVDGGYQKIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQG 241          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5K8G0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G0_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 1.420e-93
Identity = 126/182 (69.23%), Postives = 152/182 (83.52%), Query Frame = 1
Query:    1 QVLGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVSKLY 546
             VLGVLQVLGRGNCFADVA +SLMS+ TA+KSFHRFCDCF+ GLWHQWV LPEG+ LK+V   Y  +  PG V S DCTH++   C +SETN HKGKEGYT++V+EA CDH+GRI++STKG+PGAENDKTVVKRDLSV R++ EEPWA YK+ L+ L+G ++ HTGGWLIVDGGYHRVS ++
Sbjct:  100 SVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMVCPGVVASVDCTHISLPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWARYKFVLFDLEGNTTEHTGGWLIVDGGYHRVSSVW 281          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.850e-82
Identity = 124/235 (52.77%), Postives = 157/235 (66.81%), Query Frame = 1
Query:  109 CDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHRVS------KLYDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTGKDGEADE 795
            C+ F+ GLW  WV+LP GD+LK+VE IY + G+PGA GS DCTH  W  C +SE N H GKEGYTS+V E  CDH+GRIIA+TK  PGAENDKTV+ RD S+ RI+ EEPW SY             +T  W+IVDGGY ++       K ++     +WS+R ES+ KDIEC FGR+KGR+RLF   ILF++R+K DNA F ACI+HNML  F+ L  +E+D +W G  G   E
Sbjct:   90 CEKFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRWPGCPFSEKNTHTGKEGYTSLVVECACDHSGRIIAATKTCPGAENDKTVIARDKSIWRIRDEEPWKSY-------------YTRAWIIVDGGYPKIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAGRLGE 311          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 4.840e-80
Identity = 121/267 (45.32%), Postives = 170/267 (63.67%), Query Frame = 1
Query:    1 QVLGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHR------VSKLYDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTGKDG 783
            QVL  LQ+L RGN FAD+ ++S +S  T   +FHRFC  F   L+ ++V LP G+DL++V   Y+++GFPGAVGS D TH+ W  C Y++  I+ GKEG  +V F+   DH+GR++A T+G+ GA NDKT+++ D +V RI+ +  +   KY+LY  DG      G +L+VD GYH+       SK    R    +SKR ES  KD+EC+FG LKGRFR+ K  I F+ +E IDN +F  CI+HNML  FD   ++ ++ NW G  G
Sbjct:   83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAG 349          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 2.310e-78
Identity = 120/267 (44.94%), Postives = 170/267 (63.67%), Query Frame = 1
Query:    1 QVLGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGYHR------VSKLYDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTGKDG 783
            +VL  LQ+L RGN FAD+ ++S +S  T   +FHRFC  F   L+ ++V LP G+DL++V   Y+++GFPGAVGS D TH+ W  C Y++  I+ GKEG  +V F+   DH+GR++A T+G+ GA NDKT+++ D +V RI+ +  +   KY+LY  DG      G +L+VD GYH+       SK    R    +SKR ES  KD+EC+FG LKGRFR+ K  I F+ +E IDN +F  CI+HNML  FD   ++ ++ NW G  G
Sbjct:  174 KVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAG 440          
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 2.460e-75
Identity = 130/299 (43.48%), Postives = 165/299 (55.18%), Query Frame = 1
Query:    7 LGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVRLPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGYTSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASYKYELYGLDGTSSWHTGGWLIVDGGY-------HRVS---------------------------KLYDVRAMQEWSKRFESVGKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANLEKDMNWTGKDGEADETT 801
            +G L+VL  G CF DVA+ SLMS++TA+ SFH FC+ F+ GLW  WV+LP GD+ K+                                N H GKEGYTS+V E  CDH+GRIIA+TK YPGAENDKTV+ RD S+ RI+ EEPW SY             +T  W+IVDGGY       H VS                           K ++     +WS+R ES+ KDIEC FGR+KGR+RLF   +LF++R+K+DNAWF ACI+HNML  F+ L  +E+D  W G  G   E T
Sbjct:    1 MGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCEKFSEGLWDTWVKLPGGDEFKK--------------------------------NTHTGKEGYTSLVVECTCDHSGRIIAATKTYPGAENDKTVIARDKSIWRIRDEEPWKSY-------------YTRAWIIVDGGYPKSLETDHVVSTQVRIKPTPDSHFRSAVSHIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAGRLGEAT 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig654.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE4.490e-15673.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE8.830e-15373.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU1_9PHAE1.200e-14072.03Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JY35_9PHAE1.040e-12169.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE3.790e-9552.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8G0_9PHAE1.420e-9369.23DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K7N8_9PHAE2.850e-8252.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE4.840e-8045.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.310e-7844.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVL5_9PHAE2.460e-7543.48DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig654contigP-littoralis_Contig654:158949..160618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size834
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.19e-58
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size834
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791367.8780963-CDS-P-littoralis_Contig654:158948..1595091680791367.8780963-CDS-P-littoralis_Contig654:158948..159509Pylaiella littoralis U1_48CDSP-littoralis_Contig654 158949..159509 +
1680791367.8920763-CDS-P-littoralis_Contig654:160345..1606181680791367.8920763-CDS-P-littoralis_Contig654:160345..160618Pylaiella littoralis U1_48CDSP-littoralis_Contig654 160346..160618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig654.38.1prot_P-littoralis_Contig654.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig654 158949..160618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig654.38.1

>prot_P-littoralis_Contig654.38.1 ID=prot_P-littoralis_Contig654.38.1|Name=mRNA_P-littoralis_Contig654.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp
QVLGVLQVLGRGNCFADVANISLMSQSTADKSFHRFCDCFTWGLWHQWVR
LPEGDDLKQVESIYNQLGFPGAVGSADCTHVAWERCAYSETNIHKGKEGY
TSVVFEAICDHAGRIIASTKGYPGAENDKTVVKRDLSVNRIQHEEPWASY
KYELYGLDGTSSWHTGGWLIVDGGYHRVSKLYDVRAMQEWSKRFESVGKD
IECFFGRLKGRFRLFKTGILFNSREKIDNAWFAACIIHNMLLQFDGLANL
EKDMNWTGKDGEADETTGPFPAQTTVGS
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mRNA from alignment at P-littoralis_Contig654:158949..160618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig654.38.1 ID=mRNA_P-littoralis_Contig654.38.1|Name=mRNA_P-littoralis_Contig654.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1670bp|location=Sequence derived from alignment at P-littoralis_Contig654:158949..160618+ (Pylaiella littoralis U1_48)
CAAGTACTGGGGGTGCTGCAGGTACTGGGTAGGGGCAACTGCTTCGCGGA TGTTGCAAACATTTCGCTGATGAGCCAATCTACGGCGGATAAGTCCTTTC ACCGTTTCTGCGACTGCTTCACGTGGGGCTTGTGGCATCAGTGGGTTCGG CTGCCTGAGGGCGATGACCTCAAGCAAGTGGAGAGCATCTACAACCAGCT GGGTTTTCCGGGGGCCGTAGGGTCAGCCGACTGCACCCACGTGGCGTGGG AGCGTTGTGCTTATTCGGAAACGAATATCCACAAGGGGAAGGAGGGGTAC ACGTCGGTTGTGTTCGAGGCGATTTGTGACCACGCTGGCCGCATCATCGC GTCGACGAAGGGGTACCCCGGGGCGGAGAACGACAAAACGGTGGTCAAGC GCGACTTGTCCGTCAACCGGATCCAACACGAGGAGCCGTGGGCGAGCTAC AAGTACGAGCTGTACGGTCTTGATGGCACGAGTTCGTGGCACACggGGGG GTGGCTGATCGTCGACgGGGGGTACCACCGGGTGAGTAAATTGTATGACG TGAGGGCAATGGTGCCGATGAAACCATGAGCGATTGTGTGGTGTGCAGGT ATAAATAGAGACGAACCCCCCACGCCCTGCAAAGCACAAGTGTGGTGCCG AAGTGTTGCTGTTGTTTTTCCATGGAATACCCCTCGTGCATGCCTTGAGG GCAATAGTTTCCATTGGGTTGTTGCAGAGAGTTGCAGGTAAGAATAGAGA GTACCCCCCCCCCCCCGCAAAGCATTGCGTCGTACCGAAGTGCTGCTGTT GTCTTTCCAAGAGCCCCCTGCCTCCCCGTCGAGGGGGAACCAGCCCGCTG TTTTTTTCTCTAGTGTACCTTTTACGCAGACCAGGGAACCACTTGCTCCT GTTCACTTTTGCATCTGATGTCGGATGTAGACCCCGCTGAACTAAGACCA GCTATCCCATTTGTGGGCGCCCCCCTGACGTGTGTGTTGCCGGACATCAA TAATAATACCACGGGCCCATCACCTCGCATATTGGTCGCTTATCACCCTC CTGATCATGGCAATTGCATCGCGATCTTGCGGTCTTGCGGCACGTAGCCC CCCCACTCGATAGAAGCATCTGATCAGCATCGATATGAGGTATCCGGTTG CTCTCATAATATCTCCGAGGATTTGTGGCTGCGGCCTACATTTTCTCTCC GGTTTGCAGTCAATCGAGAGTCCCACGTTTTTTTTATGCATTACTTGTTT CGAGGTTTTAAAACTGAATTTCCGGATCGACGAAACACAGGCCCTTACCA CATTCATTTTTCCCTTCTTTCGCCCCTGCTCCTTTTGGCCGTACACCAGG TGCCCCTTCTCATATGCCCGTATAAAACGTACGCGAGCGTTGAATAGCAG GAGTGGAGCAAGAGATTCGAGTCAGTAGGCAAGGACATCGAGTGCTTTTT TGGAAGACTCAAGGGGCGGTTCAGGTTGTTCAAGACGGGCATTTTGTTCA ATAGCCGGGAGAAGATCGACAACGCCTGGTTCGCGGCTTGCATCATTCAC AACATGCTCCTGCAGTTCGACGGCCTGGCCAACCTTGAGAAGGACATGAA CTGGACGGGCAAGGATGGAGAGGCGGACGAGACCACCGGCCCTTTCCCCG CACAGACGACTGTTGGCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig654:158949..160618+

>mRNA_P-littoralis_Contig654.38.1 ID=mRNA_P-littoralis_Contig654.38.1|Name=mRNA_P-littoralis_Contig654.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig654:158949..160618+ (Pylaiella littoralis U1_48)
CAAGTACTGGGGGTGCTGCAGGTACTGGGTAGGGGCAACTGCTTCGCGGA
TGTTGCAAACATTTCGCTGATGAGCCAATCTACGGCGGATAAGTCCTTTC
ACCGTTTCTGCGACTGCTTCACGTGGGGCTTGTGGCATCAGTGGGTTCGG
CTGCCTGAGGGCGATGACCTCAAGCAAGTGGAGAGCATCTACAACCAGCT
GGGTTTTCCGGGGGCCGTAGGGTCAGCCGACTGCACCCACGTGGCGTGGG
AGCGTTGTGCTTATTCGGAAACGAATATCCACAAGGGGAAGGAGGGGTAC
ACGTCGGTTGTGTTCGAGGCGATTTGTGACCACGCTGGCCGCATCATCGC
GTCGACGAAGGGGTACCCCGGGGCGGAGAACGACAAAACGGTGGTCAAGC
GCGACTTGTCCGTCAACCGGATCCAACACGAGGAGCCGTGGGCGAGCTAC
AAGTACGAGCTGTACGGTCTTGATGGCACGAGTTCGTGGCACACggGGGG
GTGGCTGATCGTCGACgGGGGGTACCACCGGGTGAGTAAATTGTATGACG
TGAGGGCAATGCAGGAGTGGAGCAAGAGATTCGAGTCAGTAGGCAAGGAC
ATCGAGTGCTTTTTTGGAAGACTCAAGGGGCGGTTCAGGTTGTTCAAGAC
GGGCATTTTGTTCAATAGCCGGGAGAAGATCGACAACGCCTGGTTCGCGG
CTTGCATCATTCACAACATGCTCCTGCAGTTCGACGGCCTGGCCAACCTT
GAGAAGGACATGAACTGGACGGGCAAGGATGGAGAGGCGGACGAGACCAC
CGGCCCTTTCCCCGCACAGACGACTGTTGGCAGC
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