mRNA_P-littoralis_Contig1169.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1169.16.1
Unique NamemRNA_P-littoralis_Contig1169.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1169.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1169contigP-littoralis_Contig1169:49163..49615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.9402256-UTR-P-littoralis_Contig1169:49162..492781680789485.9402256-UTR-P-littoralis_Contig1169:49162..49278Pylaiella littoralis U1_48UTRP-littoralis_Contig1169 49163..49278 +
1680789485.9671268-UTR-P-littoralis_Contig1169:49608..496151680789485.9671268-UTR-P-littoralis_Contig1169:49608..49615Pylaiella littoralis U1_48UTRP-littoralis_Contig1169 49609..49615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.9529781-CDS-P-littoralis_Contig1169:49278..496081680789485.9529781-CDS-P-littoralis_Contig1169:49278..49608Pylaiella littoralis U1_48CDSP-littoralis_Contig1169 49279..49608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1169.16.1prot_P-littoralis_Contig1169.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1169 49279..49608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1169.16.1

>prot_P-littoralis_Contig1169.16.1 ID=prot_P-littoralis_Contig1169.16.1|Name=mRNA_P-littoralis_Contig1169.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MYLKEKEEKNIVSVRCMPSTAGAVMCCVLLADSVLGERCICRRNIKHIHH
VICVSIYYHCLLLFNTAAPLHPPFFMLPARCHLILVTGVMFLKLEAVKLM
VHYCCTCTT*
back to top

mRNA from alignment at P-littoralis_Contig1169:49163..49615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1169.16.1 ID=mRNA_P-littoralis_Contig1169.16.1|Name=mRNA_P-littoralis_Contig1169.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig1169:49163..49615+ (Pylaiella littoralis U1_48)
ACCACAGGAAACCGCACAACACAGCAGTAAAAAACGAAGCTCCCCTCCCT
AATGTACTACTGTTATCATTCACTCACTACCGCTGCGATATTATATTATG
CGCGGCTGCCCCTCTAATGTACTTAAAAGAGAAAGAAGAGAAGAATATCG
TGTCCGTGCGGTGCATGCCCTCTACTGCTGGCGCTGTGATGTGCTGCGTA
TTGCTAGCCGACTCAGTTCTTGGAGAAAGGTGCATCTGCAGGCGTAATAT
AAAACACATACACCATGTAATCTGCGTGTCTATATACTATCATTGTCTTC
TTCTTTTTAACACTGCTGCACCCCTGCACCCTCCTTTTTTTATGCTTCCA
GCCAGATGTCACTTGATTTTAGTCACAGGTGTAATGTTTCTAAAACTAGA
AGCTGTGAAACTCATGGTGCACTACTGTTGTACATGTACCACGTAAAAGT
GTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1169:49163..49615+

>mRNA_P-littoralis_Contig1169.16.1 ID=mRNA_P-littoralis_Contig1169.16.1|Name=mRNA_P-littoralis_Contig1169.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1169:49163..49615+ (Pylaiella littoralis U1_48)
ATGTACTTAAAAGAGAAAGAAGAGAAGAATATCGTGTCCGTGCGGTGCAT
GCCCTCTACTGCTGGCGCTGTGATGTGCTGCGTATTGCTAGCCGACTCAG
TTCTTGGAGAAAGGTGCATCTGCAGGCGTAATATAAAACACATACACCAT
GTAATCTGCGTGTCTATATACTATCATTGTCTTCTTCTTTTTAACACTGC
TGCACCCCTGCACCCTCCTTTTTTTATGCTTCCAGCCAGATGTCACTTGA
TTTTAGTCACAGGTGTAATGTTTCTAAAACTAGAAGCTGTGAAACTCATG
GTGCACTACTGTTGTACATGTACCACGTAA
back to top