mRNA_P-littoralis_Contig654.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig654.1.2
Unique NamemRNA_P-littoralis_Contig654.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig654.1.2 vs. uniprot
Match: D7G7L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.000e-33
Identity = 79/172 (45.93%), Postives = 101/172 (58.72%), Query Frame = 2 
Query:   71 QPPEWVVFVLAVTADISYAAGFVPLGYLAVVRSLLMYCLYREWVLALICGFALPRFVPLSGVCFLKQKWLAFT----DKLEVLTVEANERRAXXXXXXXXXXXXXXXPDVQQADVARKSSSSQRKQQRARGEVSGYDVSAVSGDEVVEISSWKTQKASSGRGDVS--GARRR 568
            QPPEW +F++AV AD+  AAG +P   L++ R L ++ LYREW LA  CGF LPR VPL  VCFLKQKW AF     ++L  L   ANE                   +V QA +   +S+ +  +    GEVSGYDVS+VSG+EVVE+SSW  +  S G G+ S  GAR R
Sbjct:   93 QPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANE-------------CAGLSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHGNSSSSGARVR 251
[Close]
BLAST of mRNA_P-littoralis_Contig654.1.2 vs. uniprot
Match: A0A6H5JGG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.700e-33
Identity = 76/172 (44.19%), Postives = 102/172 (59.30%), Query Frame = 2 
Query:   71 QPPEWVVFVLAVTADISYAAGFVPLGYLAVVRSLLMYCLYREWVLALICGFALPRFVPLSGVCFLKQKWLAFT----DKLEVLTVEANERRAXXXXXXXXXXXXXXXPDVQQADVARKSSSSQRKQQRARGEVSGYDVSAVSGDEVVEISSWKTQKASSGRGDVS--GARRR 568
            QPPEW +F++A+ AD+  AAG +P+  L++ R L ++ LY+EW LA  CGF LPR VPL  VCFLKQKW AF     ++L  L   ANER                  +V  A +   +S+ +  +    G+VSGYDVS+VSG+EVVE+SSW  + AS G  + S  GAR R
Sbjct:   16 QPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGVST-------------NVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAETASVGHDNSSSSGARVR 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig654.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7L1_ECTSI2.000e-3345.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGG0_9PHAE6.700e-3344.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig654contigP-littoralis_Contig654:2845..9638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1381
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_001970.1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791366.3057935-UTR-P-littoralis_Contig654:2844..36451680791366.3057935-UTR-P-littoralis_Contig654:2844..3645Pylaiella littoralis U1_48UTRP-littoralis_Contig654 2845..3645 -
1680791366.354653-UTR-P-littoralis_Contig654:9610..96381680791366.354653-UTR-P-littoralis_Contig654:9610..9638Pylaiella littoralis U1_48UTRP-littoralis_Contig654 9611..9638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791366.3197832-CDS-P-littoralis_Contig654:3645..37711680791366.3197832-CDS-P-littoralis_Contig654:3645..3771Pylaiella littoralis U1_48CDSP-littoralis_Contig654 3646..3771 -
1680791366.3325605-CDS-P-littoralis_Contig654:5378..55431680791366.3325605-CDS-P-littoralis_Contig654:5378..5543Pylaiella littoralis U1_48CDSP-littoralis_Contig654 5379..5543 -
1680791366.3430185-CDS-P-littoralis_Contig654:9349..96101680791366.3430185-CDS-P-littoralis_Contig654:9349..9610Pylaiella littoralis U1_48CDSP-littoralis_Contig654 9350..9610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig654.1.2prot_P-littoralis_Contig654.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig654 3646..9610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig654.1.2

>prot_P-littoralis_Contig654.1.2 ID=prot_P-littoralis_Contig654.1.2|Name=mRNA_P-littoralis_Contig654.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MKGRNVVDIAGRGRQPPEWVVFVLAVTADISYAAGFVPLGYLAVVRSLLM
YCLYREWVLALICGFALPRFVPLSGVCFLKQKWLAFTDKLEVLTVEANER
RAATTAAAAASASAANAPDVQQADVARKSSSSQRKQQRARGEVSGYDVSA
VSGDEVVEISSWKTQKASSGRGDVSGARRRGPR*
back to top

mRNA from alignment at P-littoralis_Contig654:2845..9638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig654.1.2 ID=mRNA_P-littoralis_Contig654.1.2|Name=mRNA_P-littoralis_Contig654.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6794bp|location=Sequence derived from alignment at P-littoralis_Contig654:2845..9638- (Pylaiella littoralis U1_48)
CTGCTGTGTATAGGCTAGTGCTCTAGCCATGAAGGGTAGAAATGTCGTCG
ACATCGCTGGGCGAGGGCGCCAGCCGCCAGAGTGGGTGGTTTTTGTACTA
GCCGTGACTGCAGACATCAGTTATGCTGCAGGGTTCGTCCCCTTGGGGTA
CCTGGCGGTGGTTCGAAGCCTCCTAATGTATTGTCTCTATCGTGAGTGGG
TCCTTGCACTTATATGCGGCTTCGCGCTGCCGCGGTTCGTGCCCTTGTCT
GGCGTGTGCTTCTTGAAGCAAAAGTGGTTGGCGTTTACGGTGAGTTATGT
TATTTGGTCCACGGAGTCCTTTCTCTACACTTGTATTTCGTAGGAAATAC
ATCAACTACCACACGCAACTATAATACTACACGTGGTGCTGCTGTAGGTT
CCTCATTTGCAGCATCAGGTATCAGGAATCAGGAATAATTTTAAGGGCCG
ATCTACGAAGATTCCATCGGATCTTTCGGAGATTCAATCGGTTGCTCTCG
CTTAGAACGGCCACAGCGTAGTACTTGTTTGCTACTTTGAAAGCGGCTAT
GCTGTTAGTAAAAGCAGATTCGGCTTCGCCGACGAGGGTAGGGACCGCGG
ATCCCTGCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTG
GGGGTAACTCCTCCTGTGTTGACCTTCCTCCTCCTGTGTGACCCCGTCGA
TGGGCCTAGCCTGTAGTTTGAACCGCAGGGTGCAGACTAGTGTGCCAGAG
AATATGGGATGACAACACACAACACACACTTGTATCTTGTATCGTCTCCA
TCTGTCCCAAACCCGCTTTCTTCGCGCCAACAATGAAATAACACCCAGCT
CCACCGCGGTGGATTTTCGAACCGTTTTTTTGGGCTCTTCATCTCACCCG
TCGAGCCCACCGGTAATGCGATGTTAACCCTTTGACCCCCCAGGGGTCTG
AAAAAAGTAATCATGGAGCCAAAAAATAACTAATTTCGGTGCACCGATGA
TTGGCAAATGGTCGACAGTCTCAAAAAAAAGAAGTACTGATGTCTCGCTG
ACTCCCTGCTCTCTCCGGGTGAAAAAAGGGGTGTGACTTGATTGTACACA
GAAATCTGTCCCCAATTTGCCCTGAAAAAAATGGGGACAGATTTCAGTCT
AAAGCTACACCAAACTTTTTTGGGGAGGTCAACTACACAAAAGTTGTTTG
TTTAGTTTTACAGGATGTTGCTTCAAAGGGATACTGCTGTATGCAAGGTA
GCACGCAGCAATACCGCCACTTGGCATGGCAGATCAGGGTACCCCGCTCG
ACAATCACACAGGGTTCCACTCCGCAACATTTATTCAGGGTCTACAGCAT
CTCATCAGCAGCAGCAGCAGCAAGCAGCAGCTGCACTAGCCTCTGAAGTC
AAACATATCATCATGTTGCATGTGATCAACGCAAGGATGTCGGCATGTAA
TGGTACCCATGTGATGATACTCGTACGAGATCGCCGGGTAAGTTTATGAG
CTTTCAAACGTGCGTGGCGCGATGTGTCTGTTTGTAGTGTCGGCCCCCGT
GTGAGTGGTGTGTGCCTCACCAACCCACCGCACGACACATCATCAGCTAG
CTGCTTGCTGCAGCATGCACGCAGCAGCAGCAGAAGCAGAGTACAATAAT
AGTTGCAGAAATCAGGGTATGTACTGTATGTGAGTGCAGCAGTACGTCAG
CATCATCAGCGTTTCATAGGAGCGGTACAGTGGTACCAGGTATAACATAG
TCTATGTATCATGTCTTATGTGTATGTGTGCATGTTGTGTGCAATGCAGC
AGGGAGGGTTGCCGGCATGACGTAAGTGTGATACAAGATGATCGCCGTTG
TGTCTACTATGCTGTCGGGCGCGCTCGCTCTCCCATAATAATAATAAAAA
ACTAAATGTGGCACCGAGGCAGCCAACGATTGGTCGATCCACACACATTC
CATCGAGCGCACGGAACCACACCCAAAATACCTGTAGATAGGCGCCTTCA
AAACCCAAGTCACAACAAAAAAAAACAGGTGTCCCGAAATTGTTCCCAAT
TGGCATCGGGGGGTTCAAAGGGTTAATACCTACCATCAGTTTCTGGCTGT
ATCTTCTCGGAGAACACCGCCAATATTGTCGCGCGGTTTCGCAAAACGGG
TCGGTACGACAGGGCAACCCTACAGTTACTGTACTAAAATCGGGATCCTC
TGTTGTCTTGGGCAGGCAGTCGGGTGCCATTCTTTATGCCTTTCGATCCA
TCCATTTATTTCTGTACTGGCTGTGACTCCCAAATACGCTCACGTATCTG
ATGAGCTGATGAGTCATAGCCAAACAACCAAACACCCCTCCAAACATATG
AAAATAATAATCCAAACAAAACTCCATGATGCATTACACGCATCGCAGCG
CGCCTGCAAGACGAGAGTCCTGTGTCAGGAAACCGGAAAAGAAAAATCTG
TCGGCAGCGCTAGCGCTATTTTGATCCACTGCTCTCGACAGATTTTCTGT
TCCGGTTTCCTGACACAGGACTCTCGTCTTGTAGGCGCGCTGCAATGCGT
GAAATACATAATTGAGGGATGTTTGGTTGTTTGGTTGATTTTTTATTTGT
GACTGAATTTGTATAGATTAATATTTTTTGGTGTCAGGGACGACAAAAAT
AGCGCCGCTCTCGACAGATTTTCTGTTCCGGTTTTCTGACACAGGACTCT
CGGCTTGCAGGCGCGCTGCGATGCGTGTAATACATAATGGGGGGATGTTT
GGTTGTTTGGTTGATTTTTGGTTTGTTGCTGGCTGTGACTCCCAAATACC
CGTACATTATCTGATGAGTCATATGATAGAAACACACGTAGGGATGTGTC
CTTTCCTTTAGGGTCATTGCTAATCTACTCCAGACCCTCGTCTGGAAAGA
GGAAAACAAAAAGAAACATACGCGTGTACAACAGCAGTAGACCGCCGTGT
AACAATGTGAGAGAGATGGCACGAGTGCGTTTTTTTTTTTCATGCCCGAT
ATCCCACCAAGGAGGGGGCGGGGGAGGGGGGGGGGGATTCATCGATGACC
GACCACGTTTTTTTCAAGGCCTCGGCAAGATCTTCCCACTGGCAGGGACC
CTCTCCGAGAAAAAAGCCACCCTCCCTTTCGTTGTCGAGACATCTGGCCG
CGTCAAACGATCGCACCCGGCTGACATCTCTGACCTATGTTATGTTTGTG
TTTGTGTCTATGTGTTTGTGTGTCTACGTGTCTGTTTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTTGTCTGTCTGTCTGCCTGTCT
CTCCGTCTGTCTGTCTGTATGTGTCTGTGTGTGTCTGTGTGCCTGTGTTT
CTGTGTGTGTCTGTGTGTCTGCGTGTCTGTGTGTATCTCTTTGTGTGTCT
GTGTGTATCTCTCTGTGTGTCTGTGTGTGTTGCCGGCCCATTCATTCTGG
ACGCCAGTCTACACCTTTTGGTATATTTCGGGGTATCAGCCAGGGTCACA
CAGCAGTAGATTGCAGAATAATCACATCCACACATTGACCGCACACAGCA
GTACATGAAAACACCTCTGTGTTGACCTTGTTCCTGTCTATCGTAACCCC
AGCTGGTGCGCCCAGCTTAAACCGGAAGGTGTAGACTGACGTCGAGAGTA
GATGGGATGACAATGCAAGCAAATAGGCACACACAGATGCATAGATCCAC
ACACCGATCGAGAAGCTTAGTTTGATGTGCTCTGAAGTTCATTTTTGAGT
GTTCGAAGTTTAGTGTGAGAAATGTGTTGTGGGCGCCCCACCCCCGGATA
GCAGCAGCAGGCAGCCACGTACGAACTCGGTCAGTTGTCGCCATCGAGGA
AATGCCACCTCCTTTGTCGCATTGCGCACATGATATGATACATCCAGATG
TGGAGAACCGAGGCACTTCTCTAGAAGTAATGGGTGAAAGACTGACCGTT
GTCCCCCTTCTGATCGCTCTTTGTTGCATACCAGCATGTATGTCCCTATC
CAGACGTCTCTGCTGCTGTATCGCTGGTCGACCTTTATTCCATACGCCTG
GCGTTGACCACACGTCTGTTTACACCCCCCGTTTCCACCCCACAGGACAA
GTTGGAAGTCTTGACAGTGGAAGCAAACGAACGACGGGCAGCGACGACGG
CGGCGGCGGCGGCGTCGGCGTCGGCAGCTAACGCGCCCGATGTGCAGCAG
GCGGACGTGGCCAGAAAGTCGTCATCGTCGCAAAGAAAGCAGCAGCGTGC
TCGGGGGGAGGTGAGACAAGGCTCACGAACAGCAGGCCTGCAATGCACAT
TCACCCCACGTGTGGTGGTGGTCTCGATATTATGGTCCGTCATGTATGGT
GTTGCGGGGAGGAGCCACGACAAATAGCCTGAATGTTCGAGGCGGCCCCG
CGTGTTCGTATTCAGTATCACGTGAGATGCCCAGTCGCGGGGTTGTTTGG
GTCGCTGCCTTGTCAGGGTTGGGGCGCTTGAAGTACTACGTGTCTGGTGC
TGTCCATCAGTCCAATCAACGACATGTGCATTTGCATTGTTTTGCCGCTC
AAAGGGTCCAGTCTCCGCTCGTGGGTGATTATTAAATGTTGTGCTCTCTG
GTGGCGGTAGGCCTTCCTCTGCCGTCCCTTGGGGTTCCGCCAACGGTGTC
ATAGGTAAAGTCGGTGTTACTGCTGTACGTATAGGTCTGCTGTGTACAGT
ACATCTGCCTGTGTGGCGGTAAATCCGCCTGCGTTTCTTTTGGGTGTGTT
CACGCGCGATGTGTGTCCGAGTCTTCGCCGCCTGAGAAAGGTTGCGAAAA
AATCGAGGTGAAATCGTGGTGATGTACGTTCGATCTTCGCTAGGAAGGCG
GGGCTGCAGCAACCGGTCGAACCTTGAGCATACTAACGATACCGGAGGGA
CTTTTCAAAGCTTTGCAGCACGAGGAAACTACGGTACGGAGGCTTGTGAT
GGATCAAAAGGACGGATAGATCGCTGCTTGTAGCCCTCATTTTTTTTGTG
GGAGCTATGATACATACGTACCGGTAGCCGCTTAGGTGGGGTTGACATCG
ATTGCTGCCTTAGTTGCCTCTGTGGTGGATCACTACAGCCAGCGCGCAAC
CTTCATCCCCCTTCACACGAAGGCCTTGGCGCTCTCTGTGCCAGCGCGGC
CCAGCGGTATTGAGGGGCCCAGCGGTGCTAATAAAGCGACATCTATACTG
TACCTATACTGAATCACATATGTATTCAAATTGTGAATGATACCCTCGCA
CGTCTTCCGTTTGCTGCCCAACCAACCAACCAACCATCATTTTCGCGGTA
CCGCCGCGGATCGCACAAGGTACCACGGGGCCCCTTCGACACTGACACTT
GAAAGCCCAATATTCCGCAGCAGAAAAGAGCGTCGGTTTCAAAACGGGTG
ATTGATCGGCGTTCGAAACATCTCGTCGAGAGCTTTCTGAACCGTAAACG
TAATACGACGTACATCATTTCATGCATGTTGGCACTTCTTTGGGTGTGGA
AGTAATTGATAGAACCTTGAGAAAAGGTCCAAAGGGGGGGGGGGAGGGGG
GGGGGGCGTGGTATCTTTTGCGACCTACGGTAGCGCACGATGTTACGCAT
CAGGCCTGAATTCCTTCAGCACTGGAAGCATCGGATCCGACCTGCACACA
CACGTATACACACACATGTAGCCTGGCGAGGGGTTTTGGTCGCAGTTCCG
GAGTCTTGTGGTTGAGGACGTGGTTGCAGGGCACCGAATAGTGCATCTGA
CTTGTTCGAGAGCTGTCGAAAGTGCTTCCTACCTGCGGGCAATTCCGTGG
GTCCTAACATACGCACTGCCTTAAAACCACGTCTCCTGTCCCACCATTCC
GTTCGTTGGCGTCACAGGTCAGCGGCTACGACGTGTCCGCGGTGAGCGGC
GACGAGGTCGTGGAGATCAGCTCGTGGAAAACGCAAAAAGCGAGTTCTGG
CCGTGGCGATGTTTCGGGAGCGCGGCGAAGAGGACCGCGATGACTTGCTC
GCCTGTTGCTAATAATATTGTACGGTATACAGTACGAGGTGTACATACGT
GGGAGTAGATGGTATGTCTGTTTCGAGCTCACGCTACTTGGAATGGCACG
AAACCGGTGTGTCGGGGCGTCGGCCATGCAGCATTATGTTGCATACGAAC
GAGAAACGTTTCATGTATATATGATATTTGGGTGTAACTTTCGGGACGTG
GCGGGTATCGTACATCAGAAATTGTACACCCTCGTCTGTTTGTACCTTCT
TGCGGTAGGTATGCATGTCTCTCCTTTCGGGGCATGCGGGGTGTCGTAAA
ACCCTGAATAGCAGCGGTAGTACAAGCATTTTTCAAGTATGGAAAAAGAG
TCGTGTGCGTCGGTCATTGCACACGTGGCGTGGTATGCGCACGACGAGAT
CGTCATACGTCTCGCTCGAAATATTTTGCTGGATTAGTTTGTTTTCTTCT
TTAGACTCTCTCCGCGAAATGCGGGCGGGGGGTGCAATGTGCGAAGGGTG
CCCGAGGTTGTCTGATTAGTAAAATTTTTAAGGAAATTCCTCACAATTGG
TTGAAAATCTCTAGACAAACTTACTGTAGGGATAGGTTCCGCAGCAGTTA
TGACCCCAAGGTGAGGGGTTTATTTAATACTCCGGAGTACCAGGTACTCC
GTATTTATTTATTCGAAGTACCATCTACGGAGTATTTCATACTCCGAAGT
ACGACGTATAATTTTAATACCATCCGTTATCTCGTAATCGACTGATCAAC
TGTCGACGACGAGGGAAAGGGGTGTACTGAACCCTTCTCACGAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig654:2845..9638-

>mRNA_P-littoralis_Contig654.1.2 ID=mRNA_P-littoralis_Contig654.1.2|Name=mRNA_P-littoralis_Contig654.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig654:2845..9638- (Pylaiella littoralis U1_48)
ATGAAGGGTAGAAATGTCGTCGACATCGCTGGGCGAGGGCGCCAGCCGCC
AGAGTGGGTGGTTTTTGTACTAGCCGTGACTGCAGACATCAGTTATGCTG
CAGGGTTCGTCCCCTTGGGGTACCTGGCGGTGGTTCGAAGCCTCCTAATG
TATTGTCTCTATCGTGAGTGGGTCCTTGCACTTATATGCGGCTTCGCGCT
GCCGCGGTTCGTGCCCTTGTCTGGCGTGTGCTTCTTGAAGCAAAAGTGGT
TGGCGTTTACGGACAAGTTGGAAGTCTTGACAGTGGAAGCAAACGAACGA
CGGGCAGCGACGACGGCGGCGGCGGCGGCGTCGGCGTCGGCAGCTAACGC
GCCCGATGTGCAGCAGGCGGACGTGGCCAGAAAGTCGTCATCGTCGCAAA
GAAAGCAGCAGCGTGCTCGGGGGGAGGTCAGCGGCTACGACGTGTCCGCG
GTGAGCGGCGACGAGGTCGTGGAGATCAGCTCGTGGAAAACGCAAAAAGC
GAGTTCTGGCCGTGGCGATGTTTCGGGAGCGCGGCGAAGAGGACCGCGAT
GA
back to top