mRNA_P-littoralis_Contig652.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig652.2.1
Unique NamemRNA_P-littoralis_Contig652.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig652.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig652contigP-littoralis_Contig652:12015..12771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size757
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791363.4379032-UTR-P-littoralis_Contig652:12014..121591680791363.4379032-UTR-P-littoralis_Contig652:12014..12159Pylaiella littoralis U1_48UTRP-littoralis_Contig652 12015..12159 -
1680791363.4567204-UTR-P-littoralis_Contig652:12609..127711680791363.4567204-UTR-P-littoralis_Contig652:12609..12771Pylaiella littoralis U1_48UTRP-littoralis_Contig652 12610..12771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791363.4475608-CDS-P-littoralis_Contig652:12159..126091680791363.4475608-CDS-P-littoralis_Contig652:12159..12609Pylaiella littoralis U1_48CDSP-littoralis_Contig652 12160..12609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig652.2.1prot_P-littoralis_Contig652.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig652 12160..12609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig652.2.1

>prot_P-littoralis_Contig652.2.1 ID=prot_P-littoralis_Contig652.2.1|Name=mRNA_P-littoralis_Contig652.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
MFNVRELGADDEQFVVIGDKGMMKVTAIGSLFLKFMFLREGDDTVHTVET
QIDNVLVVPGIGFNLFSGWRASVEGAAVALHRDGTHISNGKLIFMRGRSN
DYAYAIRLPPPVQRANISLTSVPPSAPLPFPRMRVLCRVMFRVHSPLPP*
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mRNA from alignment at P-littoralis_Contig652:12015..12771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig652.2.1 ID=mRNA_P-littoralis_Contig652.2.1|Name=mRNA_P-littoralis_Contig652.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=757bp|location=Sequence derived from alignment at P-littoralis_Contig652:12015..12771- (Pylaiella littoralis U1_48)
AGTGTGCATAGAGGCAAGTGTGATTCTGGTTCTGAGCGTGCAAATGTTCT
GGGAAGTTATGCGTTGGTGTGCTCGAGTAGGCGTATCCCTCAACCCCCTG
GCAGTGAGAAATGGGAGTCTGACACGGGTGCCAGTGCTTTCATCACATTT
AACAGAGAGAAGATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCA
GTTTGTCGTGATCGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAA
GTTTGTTCCTGAAATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCAC
ACGGTTGAGACACAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATT
CAATTTGTTTTCAGGATGGAGGGCTTCTGTAGAGGGGGCAGCTGTTGCGC
TTCACAGGGATGGTACTCACATCTCAAATGGCAAACTCATCTTCATGCGT
GGGCGATCAAATGACTACGCATATGCCATTCGACTTCCCCCTCCCGTTCA
GCGTGCTAACATCTCCCTCACAAGTGTCCCCCCGAGTGCCCCTCTTCCCT
TCCCCCGAATGAGAGTGCTGTGTCGAGTGATGTTCCGAGTGCATTCTCCC
CTTCCCCCCTAGCTGCGGCAGGACCAAATATTGACAAGTCTTTGTGTGTG
GAGGCTTTCCCTGGTATGACTCTGGGACCCGAGGTGGAGAGTGTGCTGTC
AGATACGAGAGTGAACAGAGGATGTGATTCGAGTGACGCGTGGTGTTTTT
TCCCCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig652:12015..12771-

>mRNA_P-littoralis_Contig652.2.1 ID=mRNA_P-littoralis_Contig652.2.1|Name=mRNA_P-littoralis_Contig652.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig652:12015..12771- (Pylaiella littoralis U1_48)
ATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCAGTTTGTCGTGAT
CGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAAGTTTGTTCCTGA
AATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCACACGGTTGAGACA
CAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATTCAATTTGTTTTC
AGGATGGAGGGCTTCTGTAGAGGGGGCAGCTGTTGCGCTTCACAGGGATG
GTACTCACATCTCAAATGGCAAACTCATCTTCATGCGTGGGCGATCAAAT
GACTACGCATATGCCATTCGACTTCCCCCTCCCGTTCAGCGTGCTAACAT
CTCCCTCACAAGTGTCCCCCCGAGTGCCCCTCTTCCCTTCCCCCGAATGA
GAGTGCTGTGTCGAGTGATGTTCCGAGTGCATTCTCCCCTTCCCCCCTAG
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