mRNA_P-littoralis_Contig652.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig652.4.1
Unique NamemRNA_P-littoralis_Contig652.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig652.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig652contigP-littoralis_Contig652:15823..16177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791363.3716116-UTR-P-littoralis_Contig652:15822..158911680791363.3716116-UTR-P-littoralis_Contig652:15822..15891Pylaiella littoralis U1_48UTRP-littoralis_Contig652 15823..15891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791363.3899662-CDS-P-littoralis_Contig652:15891..160301680791363.3899662-CDS-P-littoralis_Contig652:15891..16030Pylaiella littoralis U1_48CDSP-littoralis_Contig652 15892..16030 -
1680791363.4056787-CDS-P-littoralis_Contig652:16049..161771680791363.4056787-CDS-P-littoralis_Contig652:16049..16177Pylaiella littoralis U1_48CDSP-littoralis_Contig652 16050..16177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig652.4.1prot_P-littoralis_Contig652.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig652 15892..16177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig652.4.1

>prot_P-littoralis_Contig652.4.1 ID=prot_P-littoralis_Contig652.4.1|Name=mRNA_P-littoralis_Contig652.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
GEAHARELEAASGEEQADDDSDSEADVENVTPSTAQQQQQQQHCSSLDRR
RQRRLGKHGLLRSHTAPPTGAAALSRLATNQIRSGEIP*
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mRNA from alignment at P-littoralis_Contig652:15823..16177-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig652.4.1 ID=mRNA_P-littoralis_Contig652.4.1|Name=mRNA_P-littoralis_Contig652.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=355bp|location=Sequence derived from alignment at P-littoralis_Contig652:15823..16177- (Pylaiella littoralis U1_48)
GGTGAGGCGCACGCGAGGGAGCTCGAGGCTGCATCAGGCGAGGAACAAGC
CGACGACGACAGCGACAGCGAAGCCGATGTCGAGAATGTCACACCCTCCA
CCGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTG
CAGCAGCCTGGACCGCCGAAGGCAAAGAAGGCTCGGAAAGCACGGCCTGT
TGCGCTCGCACACAGCACCACCGACCGGCGCCGCGGCACTGTCACGGCTC
GCAACCAATCAGATTCGGTCGGGCGAAATTCCGTGAAATATGAGTCTGTT
CGGGAGAGCACGGGAAATTTCTGAGGAAGGTTCTTATTTCCGAAACGCTT
ATTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig652:15823..16177-

>mRNA_P-littoralis_Contig652.4.1 ID=mRNA_P-littoralis_Contig652.4.1|Name=mRNA_P-littoralis_Contig652.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig652:15823..16177- (Pylaiella littoralis U1_48)
GGTGAGGCGCACGCGAGGGAGCTCGAGGCTGCATCAGGCGAGGAACAAGC
CGACGACGACAGCGACAGCGAAGCCGATGTCGAGAATGTCACACCCTCCA
CCGCGCAGCAGCAGCAGCAGCAGCAGCACTGCAGCAGCCTGGACCGCCGA
AGGCAAAGAAGGCTCGGAAAGCACGGCCTGTTGCGCTCGCACACAGCACC
ACCGACCGGCGCCGCGGCACTGTCACGGCTCGCAACCAATCAGATTCGGT
CGGGCGAAATTCCGTGA
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