mRNA_P-littoralis_Contig651.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig651.2.1
Unique NamemRNA_P-littoralis_Contig651.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig651.2.1 vs. uniprot
Match: D8LDL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.040e-82
Identity = 190/357 (53.22%), Postives = 218/357 (61.06%), Query Frame = 1 
Query:   37 GVPGLSALSVADVVVKEYEKLLAAIPTMARHMGKLQLDTETMAEGLEKRVRSLVDGYRELNELVEQAPARVSYAASEYAQALGFRPREPPRSAGAIAG-DESGQTLNVEGIHRELFALREVKLALDQEVMPAPSDFQPPRTDLGA-----TRSSR--RRGVGGVSGLSKR-GISTFEDGRKRHPRSSLSAGQEALLRRGIGSTSTRVDDRAATATRASF-------SGGGPRRSSDRRVLAEIQVDPDLPLPLPTF--HGTFLGSDAEQQPGNKVKGR--NSNQQPRLFAGGRSDHPKSASIGGGGATAGETHRHGYFVPGVVVPRQRQSHGLPQELRAISTIPTPERRLPPSNAGA 1047
            G+PGLS+L+VAD VV EYEKLLAA+PTMARHMGKLQLDTE MAEGLE+RVRSLVDGYRELNELV+QAP RVS AASEYAQALG R  +     G  AG D S + L+VEGIHRELFAL+E K+ALD  +M AP+D    +   GA     T S+R   R   GV G+S+R GI+    G           G E   RR +                          +GG  RR SDRR L E+QVDPD PLPLPTF  HG  LG +A+         +  + N  P     G   HP S   GG     GE H HGYFVPGVV P+QRQSHGLP+ELRAISTIPTPE+R P S A A
Sbjct:   86 GLPGLSSLNVADAVVTEYEKLLAAVPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPVRVSDAASEYAQALGLRRTQGSPLLGDGAGMDGSDEALDVEGIHRELFALKEAKIALDAAIMLAPTDPTQRQQRRGALDRHSTSSARVANRASRGVQGVSRRSGITAVAGG-----------GGERSYRRTVAXXXXXXXXXXXXXXXXXXXXXXXXAAGGVTRRPSDRRALVEMQVDPDRPLPLPTFPGHGKLLGGEAKHXXXXXXXXQAPSGNSLP-----GDLKHPGSGGGGGEADQPGEGHYHGYFVPGVVAPKQRQSHGLPRELRAISTIPTPEKR-PASRATA 425
[Close]
BLAST of mRNA_P-littoralis_Contig651.2.1 vs. uniprot
Match: A0A6H5K2S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S2_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.420e-39
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:   37 GVPGLSALSVADVVVKEYEKLLAAIPTMARHMGKLQLDTETMAEGLEKRVRSLVDGYRELNELVEQAPARVSYAASEYAQALGFR 291
            GVPGLS+L+VAD VV EYEKLLAAIPTMARHMGKLQLDTE MAEGLE+RVRSLVDGYRELNELV+QAPARVS AASEYAQALG R
Sbjct:   36 GVPGLSSLTVADAVVTEYEKLLAAIPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPARVSDAASEYAQALGLR 120
[Close]
BLAST of mRNA_P-littoralis_Contig651.2.1 vs. uniprot
Match: A0A6H5L5H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.040e-26
Identity = 97/217 (44.70%), Postives = 114/217 (52.53%), Query Frame = 1 
Query:  421 MPAPSDFQPPRTDLGA----TRSSRR---RGVGGVSGLSKRGISTFEDGRKRHPRSSLSAGQEALLRRGIGSTSTRVDDRAATATRASFSGGGPRRSSDRRVLAEIQVDPDLPLPLPTF--HGTFLGSDAEQQPGNKVKGRNSNQQPRLFAG----GRSDHPKSASIGGGGATA---GETHRHGYFVPGVVVPRQRQSHGLPQELRAISTIPTPERR 1023
            M AP+D    +   GA    T SS R   R  GGV G+S+RG +T             +    +   R +G+   R  D A         GG  RR SDRR L E+QVDPD PLPLPTF  HG  LG +A+          N +QQ +  +G    G   HP S   GGG   A   G  H HGYFVPGVV PRQRQSHGLP+ELRAISTIPTPE+R
Sbjct:    1 MLAPTDPTQRQQGRGAADRHTTSSARVASRASGGVQGVSRRGGNTXXXXXXXXXXXXXTVAAVSSGAR-VGTRGGRAGDVAXXXXX--XXGGVTRRPSDRRALVEMQVDPDRPLPLPTFPGHGKLLGGEAKHH-------SNKHQQQQAPSGNNLPGDLKHPGS---GGGXXEADQPGGGHYHGYFVPGVVAPRQRQSHGLPRELRAISTIPTPEKR 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig651.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDL5_ECTSI1.040e-8253.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2S2_9PHAE2.420e-3989.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5H4_9PHAE2.040e-2644.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig651contigP-littoralis_Contig651:3413..5010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1074
Hectar predicted targeting categoryother localisation
Exons3
Cds size1071
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791362.305939-CDS-P-littoralis_Contig651:3413..41391680791362.305939-CDS-P-littoralis_Contig651:3413..4139Pylaiella littoralis U1_48CDSP-littoralis_Contig651 3414..4139 -
1680791362.3183277-CDS-P-littoralis_Contig651:4413..45891680791362.3183277-CDS-P-littoralis_Contig651:4413..4589Pylaiella littoralis U1_48CDSP-littoralis_Contig651 4414..4589 -
1680791362.330677-CDS-P-littoralis_Contig651:4841..50101680791362.330677-CDS-P-littoralis_Contig651:4841..5010Pylaiella littoralis U1_48CDSP-littoralis_Contig651 4842..5010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig651.2.1prot_P-littoralis_Contig651.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig651 3414..5010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig651.2.1

>prot_P-littoralis_Contig651.2.1 ID=prot_P-littoralis_Contig651.2.1|Name=mRNA_P-littoralis_Contig651.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=357bp
AQTASAIEVEENGVPGLSALSVADVVVKEYEKLLAAIPTMARHMGKLQLD
TETMAEGLEKRVRSLVDGYRELNELVEQAPARVSYAASEYAQALGFRPRE
PPRSAGAIAGDESGQTLNVEGIHRELFALREVKLALDQEVMPAPSDFQPP
RTDLGATRSSRRRGVGGVSGLSKRGISTFEDGRKRHPRSSLSAGQEALLR
RGIGSTSTRVDDRAATATRASFSGGGPRRSSDRRVLAEIQVDPDLPLPLP
TFHGTFLGSDAEQQPGNKVKGRNSNQQPRLFAGGRSDHPKSASIGGGGAT
AGETHRHGYFVPGVVVPRQRQSHGLPQELRAISTIPTPERRLPPSNAGAR
TTATGRR
back to top

mRNA from alignment at P-littoralis_Contig651:3413..5010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig651.2.1 ID=mRNA_P-littoralis_Contig651.2.1|Name=mRNA_P-littoralis_Contig651.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1598bp|location=Sequence derived from alignment at P-littoralis_Contig651:3413..5010- (Pylaiella littoralis U1_48)
GCACAAACTGCATCGGCGATCGAAGTCGAGGAGAACGGGGTGCCTGGACT
TTCTGCCCTATCGGTGGCCGACGTCGTGGTGAAAGAGTACGAGAAGCTTC
TTGCGGCTATCCCGACGATGGCGAGGCACATGGGGAAGCTCCAGCTGGAC
ACGGAAACCATGGCGGAGGGTGAGCGAGCAAGCGCCCGTCGGCCCGGCCC
GTGTCGTGGGTCATTGAGGGGTAACGTTTTCGTGAGACTTTTTTCCCCCC
ACTACGTAGCGTTTGCGATGCGGTGCGGTACCGAAATTATGTTGACTTTC
AAACCCCGTACTTCATCGAGGCAATCCAGGCCGTGGTCGCGAATGGCTCG
TTTTTGCATCAAGCTATACGTTTTTCATCGAAGCAATCCAGCCCGTGGTC
GCGAATGGCTCATTTTTGCAGGCCTCGAGAAGCGCGTGCGCAGTCTTGTG
GACGGCTACCGCGAGCTGAACGAGTTGGTGGAGCAGGCGCCCGCGAGGGT
AAGCTATGCCGCCTCGGAGTACGCGCAGGCGCTTGGATTTCGCCCTCGAG
AGCCCCCCCGTTCGGCAGGTGCTATCGCCGGGGATGAGTCGGGTCAGGTA
AGTCAAGCCGCGGACGGTTTTCTAGGCATAATCTTCGTGTGCAGGAGGTG
GTAACGAACTCTTGCCAGTAAATTCGGAGCATACGAGCTTCCCGCTGTTC
TCCTTATTTTCCCTTAAGAAGCATCTGTTTGTTCCCAGCGGACTGGTATA
TCGTCCCACTGATATCTAGCTTCTTGTTTGCCCGCGTTCCGTCGGCATAA
TTTGGCACCAAATTTTATGTTTTTCGATATATCCATCGTGGGGCATCTGC
CGATTTTCCTTTCACTCCCAGACGCTGAACGTGGAGGGGATTCACAGAGA
GCTTTTTGCGCTTAGAGAGGTCAAGCTTGCCCTCGACCAGGAGGTCATGC
CCGCTCCGTCTGATTTCCAGCCCCCAAGGACCGACCTCGGAGCCACAAGG
TCGTCGAGAAGAAGAGGTGTGGGTGGTGTTTCGGGCTTGTCAAAACGCGG
GATCAGCACCTTCGAGGATGGCAGGAAGCGACACCCGCGGTCCTCGTTGT
CTGCGGGTCAAGAGGCGCTGCTGCGAAGAGGGATCGGGAGTACGAGTACC
AGGGTTGACGACCGGGCAGCGACGGCGACGCGTGCAAGTTTCAGCGGCGG
CGGGCCTAGGAGATCAAGCGACAGACGAGTTTTGGCCGAAATACAGGTGG
ATCCGGACCTCCCGCTACCTTTGCCCACCTTCCACGGGACGTTTCTGGGG
AGTGACGCCGAGCAGCAGCCGGGAAACAAAGTCAAAGGTCGCAACAGCAA
CCAGCAACCGCGGCTCTTTGCTGGCGGTCGATCTGACCATCCCAAATCTG
CGAGCATTGGCGGCGGAGGCGCGACAGCGGGAGAAACTCACCGCCATGGG
TATTTCGTTCCGGGGGTGGTTGTCCCTCGGCAGCGCCAGAGCCACGGCCT
TCCGCAAGAGCTGCGCGCCATCTCGACCATCCCGACTCCAGAACGGCGGT
TGCCGCCGTCGAACGCGGGTGCCCGTACCACAGCTACCGGGAGAAGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig651:3413..5010-

>mRNA_P-littoralis_Contig651.2.1 ID=mRNA_P-littoralis_Contig651.2.1|Name=mRNA_P-littoralis_Contig651.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1071bp|location=Sequence derived from alignment at P-littoralis_Contig651:3413..5010- (Pylaiella littoralis U1_48)
GCACAAACTGCATCGGCGATCGAAGTCGAGGAGAACGGGGTGCCTGGACT
TTCTGCCCTATCGGTGGCCGACGTCGTGGTGAAAGAGTACGAGAAGCTTC
TTGCGGCTATCCCGACGATGGCGAGGCACATGGGGAAGCTCCAGCTGGAC
ACGGAAACCATGGCGGAGGGCCTCGAGAAGCGCGTGCGCAGTCTTGTGGA
CGGCTACCGCGAGCTGAACGAGTTGGTGGAGCAGGCGCCCGCGAGGGTAA
GCTATGCCGCCTCGGAGTACGCGCAGGCGCTTGGATTTCGCCCTCGAGAG
CCCCCCCGTTCGGCAGGTGCTATCGCCGGGGATGAGTCGGGTCAGACGCT
GAACGTGGAGGGGATTCACAGAGAGCTTTTTGCGCTTAGAGAGGTCAAGC
TTGCCCTCGACCAGGAGGTCATGCCCGCTCCGTCTGATTTCCAGCCCCCA
AGGACCGACCTCGGAGCCACAAGGTCGTCGAGAAGAAGAGGTGTGGGTGG
TGTTTCGGGCTTGTCAAAACGCGGGATCAGCACCTTCGAGGATGGCAGGA
AGCGACACCCGCGGTCCTCGTTGTCTGCGGGTCAAGAGGCGCTGCTGCGA
AGAGGGATCGGGAGTACGAGTACCAGGGTTGACGACCGGGCAGCGACGGC
GACGCGTGCAAGTTTCAGCGGCGGCGGGCCTAGGAGATCAAGCGACAGAC
GAGTTTTGGCCGAAATACAGGTGGATCCGGACCTCCCGCTACCTTTGCCC
ACCTTCCACGGGACGTTTCTGGGGAGTGACGCCGAGCAGCAGCCGGGAAA
CAAAGTCAAAGGTCGCAACAGCAACCAGCAACCGCGGCTCTTTGCTGGCG
GTCGATCTGACCATCCCAAATCTGCGAGCATTGGCGGCGGAGGCGCGACA
GCGGGAGAAACTCACCGCCATGGGTATTTCGTTCCGGGGGTGGTTGTCCC
TCGGCAGCGCCAGAGCCACGGCCTTCCGCAAGAGCTGCGCGCCATCTCGA
CCATCCCGACTCCAGAACGGCGGTTGCCGCCGTCGAACGCGGGTGCCCGT
ACCACAGCTACCGGGAGAAGG
back to top