mRNA_P-littoralis_Contig651.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig651.11.1
Unique NamemRNA_P-littoralis_Contig651.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig651.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig651contigP-littoralis_Contig651:51240..51769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size530
Hectar predicted targeting categorysignal peptide
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791362.1969612-UTR-P-littoralis_Contig651:51239..513131680791362.1969612-UTR-P-littoralis_Contig651:51239..51313Pylaiella littoralis U1_48UTRP-littoralis_Contig651 51240..51313 -
1680791362.2235343-UTR-P-littoralis_Contig651:51685..517691680791362.2235343-UTR-P-littoralis_Contig651:51685..51769Pylaiella littoralis U1_48UTRP-littoralis_Contig651 51686..51769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791362.2115395-CDS-P-littoralis_Contig651:51313..516851680791362.2115395-CDS-P-littoralis_Contig651:51313..51685Pylaiella littoralis U1_48CDSP-littoralis_Contig651 51314..51685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig651.11.1prot_P-littoralis_Contig651.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig651 51314..51685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig651.11.1

>prot_P-littoralis_Contig651.11.1 ID=prot_P-littoralis_Contig651.11.1|Name=mRNA_P-littoralis_Contig651.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MRPMPVFHVACCVICVSDARVYWFTSTITKTCAVRISGACCSRGRVMPCG
APTEFPTAMKTYVFSLLSTIPVPYVWAQRLGPHADRREAPHESFVFSCVM
SSHLGLYLGRHSICRCITIPQVC*
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mRNA from alignment at P-littoralis_Contig651:51240..51769-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig651.11.1 ID=mRNA_P-littoralis_Contig651.11.1|Name=mRNA_P-littoralis_Contig651.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=530bp|location=Sequence derived from alignment at P-littoralis_Contig651:51240..51769- (Pylaiella littoralis U1_48)
GGGCGGGGGGCCTGCGCTTGCGAGTCGGGGAGGGGGGCTACCATGAAGGC
GTTCACAGGGCAACTCTATTGAGCCGTTGAAATCATGCGCCCTATGCCAG
TCTTTCATGTGGCGTGTTGCGTAATTTGCGTTTCCGACGCCCGCGTGTAC
TGGTTTACGTCAACAATAACCAAGACTTGCGCTGTACGTATTTCTGGAGC
TTGTTGTTCTCGAGGAAGGGTGATGCCGTGTGGTGCTCCAACCGAGTTCC
CGACAGCTATGAAAACATACGTCTTTAGTCTCCTTTCGACTATCCCGGTA
CCATACGTGTGGGCGCAACGGCTGGGGCCGCACGCGGACAGGAGAGAGGC
CCCACATGAGAGTTTCGTTTTCAGTTGCGTTATGTCATCCCATCTCGGTC
TATACCTTGGTCGTCATAGCATATGTCGGTGCATCACGATCCCTCAGGTG
TGCTGATGTAAAAATGTTGCAACATGTGGACGCATCAGCGGGGGTCTCAG
ATGGGAAAAAAAAAATACATTGAAGTGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig651:51240..51769-

>mRNA_P-littoralis_Contig651.11.1 ID=mRNA_P-littoralis_Contig651.11.1|Name=mRNA_P-littoralis_Contig651.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig651:51240..51769- (Pylaiella littoralis U1_48)
ATGCGCCCTATGCCAGTCTTTCATGTGGCGTGTTGCGTAATTTGCGTTTC
CGACGCCCGCGTGTACTGGTTTACGTCAACAATAACCAAGACTTGCGCTG
TACGTATTTCTGGAGCTTGTTGTTCTCGAGGAAGGGTGATGCCGTGTGGT
GCTCCAACCGAGTTCCCGACAGCTATGAAAACATACGTCTTTAGTCTCCT
TTCGACTATCCCGGTACCATACGTGTGGGCGCAACGGCTGGGGCCGCACG
CGGACAGGAGAGAGGCCCCACATGAGAGTTTCGTTTTCAGTTGCGTTATG
TCATCCCATCTCGGTCTATACCTTGGTCGTCATAGCATATGTCGGTGCAT
CACGATCCCTCAGGTGTGCTGA
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