mRNA_P-littoralis_Contig650.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig650.18.1
Unique NamemRNA_P-littoralis_Contig650.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig650.18.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.930e-41
Identity = 72/113 (63.72%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  142 GLAERLKHLFGGEDGYGNGPITEGGCNTPNFSEAGVTKGKGLWQEDDKGYLIQGVHNGNATEGHPRCQIGGTVPVEKVNGSWRLCKWALPYVTTGKIVSRITHDQRFNGAGQK 480
            GL ++L   F GE+G+G+GPITEGGC  PNFSEAGVTKG+  WQ D+  YLI  VH+GN TEGHP C IGG VPVEKVN SWRLC WAL Y+   +IVS++T + R NGAG+K
Sbjct:  479 GLDQKLHDKFAGENGFGDGPITEGGCEIPNFSEAGVTKGESTWQLDEHDYLILPVHSGNKTEGHPACTIGGCVPVEKVNESWRLCHWALKYILNRRIVSKVTQNARHNGAGEK 591
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BLAST of mRNA_P-littoralis_Contig650.18.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.110e-39
Identity = 77/121 (63.64%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:  142 GLAERLKHLFGGEDGYGNGPITEGGCNTPNFSEAGVTKGKGL-WQEDDKGYLIQGVHNGNATEG-HPRCQIGGTVPVEKVNGSWRLCKWALPYVTTGKIVSRITHDQRFNGAGQKYSNNKR 498
            GLAE+LK LF GE+G+G GPIT  GC+TP F EAGVTK     WQ D+ G LI   HN N   G HP CQIGGTVPVEKVNGSWRLC WALPYV+TG++V +ITH+ R N A QK    KR
Sbjct:  431 GLAEKLKQLFAGENGFGKGPITTKGCHTPKFGEAGVTKSDRFSWQLDEDGCLILPPHNTNNPGGKHPTCQIGGTVPVEKVNGSWRLCSWALPYVSTGRVVQKITHNARHNNAPQKSRGKKR 551
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BLAST of mRNA_P-littoralis_Contig650.18.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.040e-37
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 1 
Query:  142 GLAERLKHLFGGEDGYGNGPITEGGCNTPNFSEAGVTKGKGLWQEDDKGYLIQGVHNGNATEGHPRCQIGGTVPVEKVNGSWRLCKWALPYVTTGKIVSRITHDQRFNGAGQK 480
            GL ++L   F G++G+G+GPITEGGC  PNFSEAGVTKGK  WQ D+   LI  VH+   TEGHPRCQ+GG VPVEKVN SWRLC WAL Y+   +IV RI+  QR NGA  K
Sbjct:  434 GLPQKLHDKFAGKNGFGDGPITEGGCEIPNFSEAGVTKGKSTWQLDEHDNLILPVHSSIETEGHPRCQLGGCVPVEKVNESWRLCHWALKYILARRIVQRISQSQRHNGAPAK 546
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BLAST of mRNA_P-littoralis_Contig650.18.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.720e-35
Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:  139 RGLAERLKHLFGGEDGYGNGPITEGGCNTPNFSEAGVTKGKGL-WQEDDKGYLIQGVHNGNATEG-HPRCQIGGTVPVEKVNGSWRLCKWALPYVTTGKIVSRITHDQRFNGAGQKYSNNKR 498
            +GLA +LK LF GE+G+G GPIT  GCN P F EAGVT      W  DD   LI  VHN N+  G HPRCQIGG V VE+V GSWRLC WA  YV+TG++V +ITH+QR NGA QK S+ KR
Sbjct:  535 KGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTNSDRFSWTLDDHDNLILPVHNSNSYGGKHPRCQIGGVVLVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKR 656
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BLAST of mRNA_P-littoralis_Contig650.18.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 7.990e-35
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  124 LRGGWRGLAERLKHLFGGEDGYGNGPITEGGCNTPNFSEAGVTKGKGLWQEDDKGYLIQGVHNGNATEGHPRCQIGGTVPVEKVNGSWRLCKWALPYVTTGKIVSRITHDQRFNGAGQK 480
            L  G  GLA++L   F  E G+  GPITEGGC TPNFSEAGVT+GK  W+ D+   LI  VH+G  T+GHPR  IGG V VEKVN SWRLC W L Y+   +IV +IT +QR NGA +K
Sbjct:  259 LGAGGVGLAQKLYDKFASEHGFEEGPITEGGCETPNFSEAGVTEGKSKWEHDEHDKLILPVHSGIRTDGHPRYVIGGCVSVEKVNESWRLCHWVLKYILARRIVPKITQNQRHNGAPEK 377
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig650.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L5E5_9PHAE9.930e-4163.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU43_9PHAE3.110e-3963.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV7_ECTSI1.040e-3761.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLR6_ECTSI2.720e-3559.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M5_9PHAE7.990e-3557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig650contigP-littoralis_Contig650:58686..59814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size943
Hectar predicted targeting categoryother localisation
Exons2
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791361.6610017-UTR-P-littoralis_Contig650:58685..587931680791361.6610017-UTR-P-littoralis_Contig650:58685..58793Pylaiella littoralis U1_48UTRP-littoralis_Contig650 58686..58793 -
1680791361.677611-UTR-P-littoralis_Contig650:58979..592891680791361.677611-UTR-P-littoralis_Contig650:58979..59289Pylaiella littoralis U1_48UTRP-littoralis_Contig650 58980..59289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791361.6892812-CDS-P-littoralis_Contig650:59289..598141680791361.6892812-CDS-P-littoralis_Contig650:59289..59814Pylaiella littoralis U1_48CDSP-littoralis_Contig650 59290..59814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig650.18.1prot_P-littoralis_Contig650.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig650 59290..59814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig650.18.1

>prot_P-littoralis_Contig650.18.1 ID=prot_P-littoralis_Contig650.18.1|Name=mRNA_P-littoralis_Contig650.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
RCDLGNRGEPGGKRPQQRCSGRHAQGHPWRARPASSWLLLWLRGGWRGLA
ERLKHLFGGEDGYGNGPITEGGCNTPNFSEAGVTKGKGLWQEDDKGYLIQ
GVHNGNATEGHPRCQIGGTVPVEKVNGSWRLCKWALPYVTTGKIVSRITH
DQRFNGAGQKYSNNKRPRNCVPTV*
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mRNA from alignment at P-littoralis_Contig650:58686..59814-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig650.18.1 ID=mRNA_P-littoralis_Contig650.18.1|Name=mRNA_P-littoralis_Contig650.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-littoralis_Contig650:58686..59814- (Pylaiella littoralis U1_48)
AGGTGCGACCTTGGCAACAGGGGCGAACCAGGTGGGAAGCGCCCCCAGCA
ACGGTGCAGCGGCCGTCACGCGCAGGGCCATCCCTGGCGCGCCCGACCCG
CGAGCTCGTGGCTTTTGCTTTGGCTTCGGGGCGGATGGCGAGGTCTCGCC
GAGAGGCTCAAGCATCTGTTTGGCGGTGAAGACGGTTACGGGAACGGGCC
AATCACCGAGGGCGGATGCAACACCCCCAACTTCAGCGAAGCGGGTGTGA
CCAAGGGTAAAGGCTTGTGGCAGGAGGACGATAAGGGATACCTCATCCAG
GGTGTCCACAACGGCAATGCTACCGAGGGGCACCCCAGGTGCCAAATCGG
CGGGACTGTCCCCGTGGAGAAGGTGAACGGATCGTGGCGACTATGCAAGT
GGGCGCTTCCTTACGTTACCACCGGGAAGATCGTGTCCAGAATCACGCAC
GACCAGCGCTTCAACGGCGCCGGACAGAAGTACAGCAACAACAAGAGGCC
GCGGAACTGCGTGCCCACCGTGTAAATGCTGCGTCGTGAGAATCGAAGAC
GATGCGGTGTGTCCGCTTTCATTCAGGCAGTAGCAATGGCTTCTATTCGA
GCACGCACGATCATCCTCGTGTAACGTGCTGTATATATTGGTTGCTGCAG
TTGTCGTGTTGCTGTAGAATCATCCAATTGATCATTTTGTCCGATAGGCG
GCGTAGATAGAGACGGACAAGAGGAGTTTTTCGTGCTCCATCATCATGTA
TTCCTTTACGTAGATTTTTGGTCAGCAAATATGTCCTCGCGGTGGTGTGT
GTATTTGTTTGTGCAAATACAAAGCCCCGATCAAAGTAAAACTGTGTGCT
TGTGCAGAAAAGAAAGGTGTTCCTCCCGGGGTTGTAGTCTCAGTCAATAG
GACGTGTTTGAACATTTTGTTTCATACACAAGATATCGGTGGTGGTGGTG
TGAAAATTTAGTGTGTGTGTGTGTGTGTGTGAAAACTGTGTGTTTGTGCA
AATACAAAGCCACGATCAAAGTAGAGAAAAGAAAGGTGTTCCTCCCGGGG
TTGTAGTCTCAGTCAATAGGACGGGTTTGAACATTTTGTTTCATACACAA
GATATCGGTGGTGGTGGTGTGAAAATTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig650:58686..59814-

>mRNA_P-littoralis_Contig650.18.1 ID=mRNA_P-littoralis_Contig650.18.1|Name=mRNA_P-littoralis_Contig650.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig650:58686..59814- (Pylaiella littoralis U1_48)
AGGTGCGACCTTGGCAACAGGGGCGAACCAGGTGGGAAGCGCCCCCAGCA
ACGGTGCAGCGGCCGTCACGCGCAGGGCCATCCCTGGCGCGCCCGACCCG
CGAGCTCGTGGCTTTTGCTTTGGCTTCGGGGCGGATGGCGAGGTCTCGCC
GAGAGGCTCAAGCATCTGTTTGGCGGTGAAGACGGTTACGGGAACGGGCC
AATCACCGAGGGCGGATGCAACACCCCCAACTTCAGCGAAGCGGGTGTGA
CCAAGGGTAAAGGCTTGTGGCAGGAGGACGATAAGGGATACCTCATCCAG
GGTGTCCACAACGGCAATGCTACCGAGGGGCACCCCAGGTGCCAAATCGG
CGGGACTGTCCCCGTGGAGAAGGTGAACGGATCGTGGCGACTATGCAAGT
GGGCGCTTCCTTACGTTACCACCGGGAAGATCGTGTCCAGAATCACGCAC
GACCAGCGCTTCAACGGCGCCGGACAGAAGTACAGCAACAACAAGAGGCC
GCGGAACTGCGTGCCCACCGTGTAA
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