mRNA_P-littoralis_Contig650.15.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig650.15.3
Unique NamemRNA_P-littoralis_Contig650.15.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig650.15.3 vs. uniprot
Match: D7FZ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ62_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.090e-41
Identity = 118/256 (46.09%), Postives = 139/256 (54.30%), Query Frame = 2 
Query:  200 PTTPVTDDEQWSDETEASPQHSGYTPLDQYQALGEGEDGDDRG------GDQSDHEAGNAEETWREAAEDGGRRFQHDVASIMLRAMEADYLACVESEGRTVSNGPIIPAATSTATAEPQSEASAK-LQPNGNLSSGQQQAVMGEEEGLPIAEVEAPPPXXX------RPISPLGQDQAERVMRAMQGFALSAPALPPARFEADWESPDALANLTATATNGTNAXXXXXXATTGAPQVEHREATGRSTAPANDAKR 928
            P+TP TD E WSDETE SP+H+GY  LDQYQ LGE  +GD+        G +         E W     D     Q D+AS++LRAME DY ACVESEG  VSNGPI  A  +T T +P SE  A+ L+ NG L+ GQ                     XXX      RP+SPLGQD+AERV+RAMQGF L+AP+LPPA FEADW  P ALANL A  T    A              E   A   +TAPAN+  R
Sbjct:    6 PSTPTTDGEHWSDETEGSPEHTGYAALDQYQPLGE--EGDEXXXXXXXXGTEEQRTESVGGEGWPAGVVDVDTSLQPDMASVLLRAMEEDYRACVESEGHVVSNGPIAAATAATETRKPPSEEPAQQLEGNGTLTPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXATMRPVSPLGQDRAERVIRAMQGFTLAAPSLPPAPFEADWGHPSALANLAAANTTSAEAGE------------EGGGAIEPATAPANEDHR 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig650.15.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ62_ECTSI1.090e-4146.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig650contigP-littoralis_Contig650:43303..50253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2276
Hectar predicted targeting categoryother localisation
Exons5
Cds size744
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig650.15.3prot_P-littoralis_Contig650.15.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig650 43490..48908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791361.5266702-UTR-P-littoralis_Contig650:43302..434891680791361.5266702-UTR-P-littoralis_Contig650:43302..43489Pylaiella littoralis U1_48UTRP-littoralis_Contig650 43303..43489 +
1680791361.5931244-UTR-P-littoralis_Contig650:48908..502531680791361.5931244-UTR-P-littoralis_Contig650:48908..50253Pylaiella littoralis U1_48UTRP-littoralis_Contig650 48909..50253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791361.5412223-CDS-P-littoralis_Contig650:43489..437171680791361.5412223-CDS-P-littoralis_Contig650:43489..43717Pylaiella littoralis U1_48CDSP-littoralis_Contig650 43490..43717 +
1680791361.5510886-CDS-P-littoralis_Contig650:45773..458331680791361.5510886-CDS-P-littoralis_Contig650:45773..45833Pylaiella littoralis U1_48CDSP-littoralis_Contig650 45774..45833 +
1680791361.5610359-CDS-P-littoralis_Contig650:46240..464541680791361.5610359-CDS-P-littoralis_Contig650:46240..46454Pylaiella littoralis U1_48CDSP-littoralis_Contig650 46241..46454 +
1680791361.5706909-CDS-P-littoralis_Contig650:48301..483641680791361.5706909-CDS-P-littoralis_Contig650:48301..48364Pylaiella littoralis U1_48CDSP-littoralis_Contig650 48302..48364 +
1680791361.5793502-CDS-P-littoralis_Contig650:48729..489081680791361.5793502-CDS-P-littoralis_Contig650:48729..48908Pylaiella littoralis U1_48CDSP-littoralis_Contig650 48730..48908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig650.15.3

>prot_P-littoralis_Contig650.15.3 ID=prot_P-littoralis_Contig650.15.3|Name=mRNA_P-littoralis_Contig650.15.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp
MSTHPTTPVTDDEQWSDETEASPQHSGYTPLDQYQALGEGEDGDDRGGDQ
SDHEAGNAEETWREAAEDGGRRFQHDVASIMLRAMEADYLACVESEGRTV
SNGPIIPAATSTATAEPQSEASAKLQPNGNLSSGQQQAVMGEEEGLPIAE
VEAPPPPPPRPISPLGQDQAERVMRAMQGFALSAPALPPARFEADWESPD
ALANLTATATNGTNAANGTNAATTGAPQVEHREATGRSTAPANDAKR*
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mRNA from alignment at P-littoralis_Contig650:43303..50253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig650.15.3 ID=mRNA_P-littoralis_Contig650.15.3|Name=mRNA_P-littoralis_Contig650.15.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=6951bp|location=Sequence derived from alignment at P-littoralis_Contig650:43303..50253+ (Pylaiella littoralis U1_48)
GCGAAAAACTCGTCTCGCTGTCCACTGTCCACAGCAGTCCAGTGTGTCTG
CCTCGCAGCTGCGCACTGCTATCATACTCGTACCGCAGGTCTGGTCGGCT
GCTAGCAGACGCAAGTCGTAGGTGAACGAATAGTATAGCTCTGCCCTACA
CCAACAGGTACCAGAGGTAGAAGGTCGTCAAAGGGTGATGTCAACACATC
CAACCACGCCTGTCACAGACGACGAGCAGTGGAGCGATGAAACGGAAGCT
TCTCCGCAGCATTCAGGATACACGCCCTTAGACCAGTATCAGGCCCTAGG
AGAAGGTGAAGATGGTGATGATAGGGGGGGCGATCAGTCTGATCACGAGG
CTGGAAATGCAGAAGAGACCTGGCGAGAAGCCGCTGAAGACGGCGGAAGA
AGATTTCAACATGACGTGAGAGGGAGAGAGGGATGGGAAAAAATAAGCAC
TAGCCAATTCTTCTGCTAGTAGATTGCGGGCGGATTGTATGTTTGCGCTC
ACAGCAGTGTTGCTTCTCAAATTAGCTCAACTCCAAAATCTAGCCCGTGG
TCACAAAAAGTGCTGAGCCCTACAAGTAGGAAGATTAAAAAAACAGAAAG
AAACTACAAGGAAGGGAGTACCCAAGAAAGACCGAAGAAGATAGCAGTGT
GTTGTCATCCCATATTCTTTGGCACGCTAGTCCGCACCCTGCGGTTCAAA
CTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAG
GAGGAGTTACCCCCACCTTCCTTCTGCAGTACATGCGTGAGATTTTTTCT
CGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGC
TTTTTACTAACAGCATAGCCGTTTTTAAAGTAGCAAAGGAACACATTCGC
CGGGAATCGAACCCCCGTTCCTCTGCATCTAGTCGTTAACGAGGGGACCA
CTAGTCCACCGGGGCGACCGGTGCAGTGTGTGTGTGTGTTGTCATCCCAT
GTTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCCCATCGACGGGG
TCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCT
GCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGTCCCTA
CCCTCGTCGGCGAAGCCGAATCTGATTTTACTAACAGCATAGCCGCTTTC
AAAGTAGCAAAGTGTTGGTGCCTGTATTGATATTGCGGGGTAATTTCAGA
CTACAATCAGTATGCTCACGTACGATGTGAAACGGCCTAACCCTAACCCT
AACCTGACCTCTGGGGTGATCGCCCGACCGCCCGACCGCCCGACCTCTTG
GGCGATCGGGTGCGAAAGGGGCCTCTGCGCGGCTTCGCCGCGCGTTTGGT
TGGCGTTCTTGAAAAAAAGCGGCCGTTGGCCTTTGGCCAATCAGACAGTG
TCGTCAAGTTAAACTGCACGCATGGTGCTTTTTGCAGTTTTAAACTGCAA
ATAGGGGCTACCGATATATACCTACAAGCAGTGCTGCCGTGATGTGCGAG
CGGAGTGCTTGTTTGCGATTCGCTCCTTCAGCACTATTGTTGCCTGTGAT
GACATTGCGGCGTAAATACAGAAACAATCAAATGCTCACAGATGTGCGTG
ATGTACGAGCGACTCCGCACCTCCCGCCGTGGTACAGCGGACACATCTTC
GCATCACACCCTCACACCACGTCGCAACTATCATACGTACCTTGTTTTCA
CAATTCAGAAATACGTGATTGGTATCATGAGAGTGTTGGGTGTCGAAGGA
TAGTCAGGACAGAGTCCGGTTCTCCGCATGATACTGCAGGTACCTGGCAG
TAATAAATCCCAAAACAGAAAGAGAGAGAGAGAGAGAGAGGAGAGGCGGC
GACGTTGTTGGCTTGGGCTAAGAGTATGGCGCTTTTGCGGCCACAGCAGC
AGTATTCGAGGAGGTATTCCTCCCCGTGGGGCGTGCTTAATACCGCTCCC
TCTGATATCTCATACGAGGGGTGATATGGCGATAAACATGCAGTGTTGGA
TGGACGCTGGCCCAGCGTTGCTCCCAGCGGTGCATCCTTCCTGTAGCAAC
GTTCCCGGTTGGTTCCCTCAACATCATCGAGTGTTCGTAGTCTACTCTCG
AAGGCTTTTGGATCGTGCCGGCTCCGTACCCATGAGAGCCTTACGAGTCC
ACGCTGCCTCGTTGTCAGTGATCGACATCCAACCAAGATGGATTTCATCA
GTGGCACACTTCGTCACATTAGCGTAGCATGTGAACGCACGACGACGCAT
GGACTCATAGACCGTAAGCCTAGTATACCATCGAGGACACAAGAGCGTTA
TGGAGAGGAGCCCGTCGAAACAGGAACGCAACAAGAATCTTGTGTAGTCT
GTCGCTGTTGAGTTTGTAAGATAAACACCCACGTAAGACACACCCACCCG
AACCCAAACTCATGCGGGCAGGTGGCGTCTATCATGCTGAGAGCGATGGA
AGCAGACTACCTCGCGTGCGTCGAAAGCGAGGTGAGGTTCCGAATGCGGG
GAGCCGAGGATGGTTCCGGTGGAAGTTTCAATTTCAACCCAAAGGCTGGT
TGGCACACATAACTCCATCCTGTCTTGGCTCACGAGCTGCGGAGAGCGCA
TGAGCACCACGCACTACGCACACACGACTTAAACAACAGAAATGAGGGTC
TTCACATAAGTTTCTCGTAGCACTGACCATTTGGTCATCTAGAGGTTCTC
AAGTATGCGATGGCGGAAACACAACTGTCACCGGTCGCCGTCCCATCTCG
CGCCACCATGTATTCTTACCTGGTCACTTCACGCTCTCCCAAGTCAAGTC
ATTACAACGTTTCTTAAAGGTAGTGATCATACCGAAGGTGTTTAATCGGC
GCTACCTTGAATCTTGCCACTCGGTTCTGTTTCAACAGGGCCGAACTGTC
AGCAATGGTCCTATTATCCCGGCGGCAACCTCTACAGCGACTGCCGAACC
CCAAAGCGAAGCGTCCGCCAAGCTTCAGCCGAATGGGAACCTTAGCTCAG
GGCAACAGCAGGCGGTGATGGGTGAAGAGGAGGGACTGCCTATAGCGGAG
GTGGAGGCACCACCGCCGCCGCCGCCAAGGCCTATTTCGCCCCTAGGCCA
AGGTGGGGTTATCATCGTAGCGTGCCACTGCTCGCCGCAACTCCACTGAC
CCTGTTTGCCCGAAATACGGAAGCTACTGTTTTAGCGTTGCAGCTTGCTG
CGAACTATTTTTGGCGCGCAATTAGGCGCACCTTGGAAACCTGGTGCGGT
TGTGAGTACGACCGGGGGTGTTAATAAAACACGTCCTTCGAGTTTTCAAG
GGCCGTCTAGTCTCATGTAGAACAAAGGGTAAAGCTAACTTGGTTTCGAT
TTTCAGTACGAATACAAAGTGTGAAGCATGGCCTATCGATCCTTTGCTTC
TTTCGGATTTTATGCTAGAGGTATCAGAAAAATTACCACAGGGAAAATTG
GCTTGTGGCAGCCAAGCGTTCATGGCGACGTTGCTTTTCGATTCTTCGAT
GTCGGCTTTTCCTGGCATTGTGTCGCAAAAGTCACCACGTCTAGGATTGT
TCACCCACGAACAGGGAACGTGAGCTGGGTTTAGACCGCGTGAGACAGGT
TAGGTTGACTCTACTGATGAGTTTTTGCCACGACAGTAATCTGACTTAGC
ACGAGAGGAATCGTTAGTTCGGATAGTTGGTTTATGGGGTTGTCTGAAAA
GACAATGCCCCGAAGCTACCATCCGTCGGAGTATGACTGAACGCCTCTAA
GTCAGGATCCATGCTGAAAAGTGGCGATGCACTTGCTCCCGATGTCACGC
GAATAGCGATAACCAAATGGCCAGCATTATTAAACTGCTTGCTACGCTAA
ACCACAATTTCTACCGTTGGGAGCGGTAAATCCTTTCGTAGACGACTTGA
TAAGGAACGGGGTGTGTACTAATCTGTTCAACTTACTTAACCCTTACCAT
AACCCTAGCACTAACCCTAACCCAAAGTAAAATACTGGTAGTGCCAACCC
GGAGGCATGAGAGTAGGCTTTTTCCTACGATCGGCTGAGATTAAGCCTCT
TGTTCCGAAGATTTGGGCGGAAACAAATATCTGATAATTTTCTCTACGCA
TCTCGTCCCCCCCCAGACCTATGTACCCCCACCCCCCACAGCATTTCCTT
TTGCTTTGCTTACACACACGTTCTTCCGGGTTGGCACTACCAGTATTTTA
CTTTTGCCAGAACGACACGAACATACCACACACAACAAACACTTTGGACA
TCACGTCTTGTGCCCTGAAATTTTTTATCTCGGAATTTTATTCATGTCCG
CTTACGCACTAGCACCGTGCGCGAACATTCCCATGTTTACATTCTTTTTC
TGTTTCTTCCGGGTTGGCACACCACTTGAGTTACTATCAATCGGCACCTT
TTATAACTCACAAATACACACATCGAAAACCGGAACGGCCATACCACGCC
GATCGCACCACATCCCGTCCGCTCTGTGAAGTTGAGCGGCGTCGGTCAAG
GCTAGTTCTACGGTGGGGGATCGCGTGGAATGACCTGGAACTGTTCATTT
TTACACCTTTTTATGTCGACTGTTGTGCGTATTGTTGTTATTGTTTTAAT
TGTTGTTCTAACATCGGCAGCACCGGCAAGGGGGGTAGACTGAGGCCGAG
TGGGACCTGTTTCTCCTACCGCCGATCTGCAAAACCATGCGCGCACTGCC
GTGGCTATACAGTTTAGTATTTCGTTTGCTCATATGATTTACTTTAGAAA
TTACGCCGCAGGTGCGTTGACCAATCAGCGAACTGCGTGCCACAAATGTT
TTTCTCAACACTGCCTGTTCTAGATTATTTCAACTCTGTTACATTGGCTT
TTGAATCGGTTCAAGTTGCGGGCATCTTTTTGACCTCAACTGCCCTTTCG
TCCCAACCCCACCATGCCAACCGCACCTACCCTCGGCTTTGGAGTCCAGA
CCAAGCGGAGCGAGTGATGCGCGCGATGCAAGGCTTCGCGCTCAGCGCCC
CTGCCCTCCCACGTGAGTCTTCATAGCTGTTGGACACGTTTTTTGGTAGA
AGGAAGCGTAGAATACGTCCATCAACGGCAAGAGACATTCAACAAATGAC
GTGCATGTCCACACGCTCGGCTGGCCGCCTCCCTCCGTCTTCACACACGT
AGCCATAAACGCACAGCGGCATTCATACTCGTCCCCTCCTTGTTTCCCTC
TCGCGCGCCTTCTTTCATTTCTGCATGTATCTCTTCTTCACAAGTTTTTT
AGGATACTGTTCATGCGGACATCCCGCTCGTCCAATTCGTGTCATACACA
CTTCGTCGTCGCACTCCCGCGCCCGTCTGTAACTTTTTCATTCCTTTATT
ACGTATGCCGATCTGGCGCAAGCGTAGCTGCTCGGTTCGAGGCGGATTGG
GAAAGCCCCGACGCTCTCGCCAACCTCACAGCAACGGCAACTAACGGCAC
CAACGCGGCTAACGGCACCAACGCGGCAACAACAGGGGCACCGCAGGTAG
AGCACCGGGAGGCAACTGGGCGGAGCACAGCACCTGCCAACGACGCCAAA
CGATAGGGCACGCTTCCCTGTACTTTATGGATGTATATACAAATGGGCGT
GTGAGTGTTGTCGAAACCTTTACCTTTTGTTGTGGCGTGAGGGAGCCCAG
CCCATACCCTCACAACTTTGGCTCCACGAGCAAGAACTTTCCTCGTATGC
GGCGCGCAGCAGTTGCATTAGACATCGAGAAGCATACAGACAACGCGTGG
GAATACGAATATCGGCGTACAGATCGCTCAAAGTTTGATCGTCAGGGTTT
GTATAGTAACCTGGTAGTGTGCCTGCTGTCCTTCGGTGGTTCATGTGGCG
GGACCTTGTGCGTAGTGCGCGGGAGGCATGTTTCCATGTCGTTTGCCGGC
AGCATCAGCAGCAGCTGCACGGGGCCCCATAGCTAACTGCGGACATTTGT
GTGGGATCAGTTCAAAGGAAACACCCCCTTCTGCTCGACCAAAGACTGTT
CGGTGGGTTTACCACCGGATGTCCCACCGGTTGGTGTTTTGAACAGAACG
CCACGGTATTGCGCGCCGAAGCCGCGAGACCCCCTCTGACCTCCTGTCAG
CCGTAAGGTCTGGTCTGGGAGGTGGGGGATAGGATTGGGATTGGGTTGAT
TTGGGTCGAGATGCTGCATAGATGTCAGCGTTCGTGGTGTGTGCACAGCA
GGTTCAAGCCTCAACTTTCAAAGTTTCACACCCGATGTGCGAAAATAATG
GAGGCTCCCGCACCAGCACCAGCAGCACCATGTGGGAACAAATTGTAATC
GAGACGATACTCCACCACCAGATTCGCGTGCCATGCACCAAGGTCGTATA
CGTGTTTGCTGAACGCCGTCCGTTCCTGATGTGGGGTGGGTCGTGATGGG
TACAGAGTTGGCATGCAGACTGCCGACAGGCTGCTGTAAATGAATATTGG
TGGGACATGAGAGGAGAACAGTAATCAAGATATCCATGGGCAAAAGTGAT
GGTGATGGTCTCGAAAAGAAGACGGCCACGAGTTTCACCACTAGCGGCGT
GTGTGCAAAGGCATACCCAGTCACCGCCGTATACTTCCTCACGTACTGCG
TTGTTATGCTGCCGGTGCGGGAGTTATGCGTCCCACTGTTTAAAATTGGG
GCCTTGACGTGGAAGCGATACAGATCTCCTGCTGTATCTCCTGTCTGAGG
GGAACACACCATATATCATGGCACATGCAGCAATCGAAACAATGCCGTCA
AAGCGATTGCAGGAAAGCAGCATCATATATTGTCAAACCACCTTGAAAGT
CTAACTGACGCCGACAACAGGCTTCAGACGGTCGCACGAGACTCTCACAC
AACCTCGGATATAATGCCGTAAACCCCTCTGTTTCCCCCCACCTATACGC
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig650:43303..50253+

>mRNA_P-littoralis_Contig650.15.3 ID=mRNA_P-littoralis_Contig650.15.3|Name=mRNA_P-littoralis_Contig650.15.3|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig650:43303..50253+ (Pylaiella littoralis U1_48)
ATGTCAACACATCCAACCACGCCTGTCACAGACGACGAGCAGTGGAGCGA
TGAAACGGAAGCTTCTCCGCAGCATTCAGGATACACGCCCTTAGACCAGT
ATCAGGCCCTAGGAGAAGGTGAAGATGGTGATGATAGGGGGGGCGATCAG
TCTGATCACGAGGCTGGAAATGCAGAAGAGACCTGGCGAGAAGCCGCTGA
AGACGGCGGAAGAAGATTTCAACATGACGTGGCGTCTATCATGCTGAGAG
CGATGGAAGCAGACTACCTCGCGTGCGTCGAAAGCGAGGGCCGAACTGTC
AGCAATGGTCCTATTATCCCGGCGGCAACCTCTACAGCGACTGCCGAACC
CCAAAGCGAAGCGTCCGCCAAGCTTCAGCCGAATGGGAACCTTAGCTCAG
GGCAACAGCAGGCGGTGATGGGTGAAGAGGAGGGACTGCCTATAGCGGAG
GTGGAGGCACCACCGCCGCCGCCGCCAAGGCCTATTTCGCCCCTAGGCCA
AGACCAAGCGGAGCGAGTGATGCGCGCGATGCAAGGCTTCGCGCTCAGCG
CCCCTGCCCTCCCACCTGCTCGGTTCGAGGCGGATTGGGAAAGCCCCGAC
GCTCTCGCCAACCTCACAGCAACGGCAACTAACGGCACCAACGCGGCTAA
CGGCACCAACGCGGCAACAACAGGGGCACCGCAGGTAGAGCACCGGGAGG
CAACTGGGCGGAGCACAGCACCTGCCAACGACGCCAAACGATAG
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