mRNA_P-littoralis_Contig1168.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1168.5.1
Unique NamemRNA_P-littoralis_Contig1168.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1168.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1168contigP-littoralis_Contig1168:24114..24714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.5236413-CDS-P-littoralis_Contig1168:24114..242931680789485.5236413-CDS-P-littoralis_Contig1168:24114..24293Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 24115..24293 -
1680789485.538658-CDS-P-littoralis_Contig1168:24626..247141680789485.538658-CDS-P-littoralis_Contig1168:24626..24714Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 24627..24714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1168.5.1prot_P-littoralis_Contig1168.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1168 24115..24714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1168.5.1

>prot_P-littoralis_Contig1168.5.1 ID=prot_P-littoralis_Contig1168.5.1|Name=mRNA_P-littoralis_Contig1168.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
GEAPSATTNPYLAVARHAWSDGSTSSSWQASFTALVSSHRSSWHSEIRTC
LCDFSIALMEKEDVAKNPFSCTDLFRGVKARVTALEQDE
back to top

mRNA from alignment at P-littoralis_Contig1168:24114..24714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1168.5.1 ID=mRNA_P-littoralis_Contig1168.5.1|Name=mRNA_P-littoralis_Contig1168.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=601bp|location=Sequence derived from alignment at P-littoralis_Contig1168:24114..24714- (Pylaiella littoralis U1_48)
GGCGAAGCTCCTTCAGCGACGACGAACCCCTACCTGGCAGTGGCCCGGCA
CGCCTGGAGCGATGGGAGCACGTCGTCATCTTGGCAGGGTCAGTGTGTGT
GTCCTTGTGTTGTAAGCCTAGTTATTGTGGATGCCAGTCTCTACCCGCAC
ATGCCGGGGTGGGGTCACACAGAAGAAAGTCAGCTAAAGGAGTCTGCCAC
GTTATACATGTAGTGTGCTCGCCTAGACCTTTTTCGCGAGAAGGGTTTAC
CCATCACGCCCCCTCCCGTCGACCTTGTAATGTCGGCTGATGTTAACACA
CGAAAGAGCAGCTTGCCACCCACAGAAATATAATTGTTTGGTACGAGCAG
GAAAGTCCCTGGGCCATCGGAACCGATTCACTGCCGTTGTGCACTTGCTT
CCCCTTTTTCAATGTGTGCAGCGTCCTTCACTGCTTTGGTGTCGTCCCAT
CGGTCGTCCTGGCATTCGGAGATCCGCACATGCCTATGCGACTTTTCCAT
CGCCCTGATGGAGAAGGAGGATGTGGCCAAGAACCCCTTCTCCTGCACCG
ACCTTTTCCGTGGGGTCAAGGCGAGGGTTACGGCGCTTGAGCAGGACGAG
G
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1168:24114..24714-

>mRNA_P-littoralis_Contig1168.5.1 ID=mRNA_P-littoralis_Contig1168.5.1|Name=mRNA_P-littoralis_Contig1168.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig1168:24114..24714- (Pylaiella littoralis U1_48)
GGCGAAGCTCCTTCAGCGACGACGAACCCCTACCTGGCAGTGGCCCGGCA
CGCCTGGAGCGATGGGAGCACGTCGTCATCTTGGCAGGCGTCCTTCACTG
CTTTGGTGTCGTCCCATCGGTCGTCCTGGCATTCGGAGATCCGCACATGC
CTATGCGACTTTTCCATCGCCCTGATGGAGAAGGAGGATGTGGCCAAGAA
CCCCTTCTCCTGCACCGACCTTTTCCGTGGGGTCAAGGCGAGGGTTACGG
CGCTTGAGCAGGACGAG
back to top