mRNA_P-littoralis_Contig65.103.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.103.1
Unique NamemRNA_P-littoralis_Contig65.103.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 3.270e-66
Identity = 115/211 (54.50%), Postives = 151/211 (71.56%), Query Frame = 3
Query:  180 RNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVEVTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAG-TLPWQLECTAEA 809
            R T    +F GK+G++ FT Q AAQRNSRNRAAGT+ TK VEVTKE +K+ ++D V P IK+R+P          + ++IQ DN   H IN DP+V AA   DGWDIRLINQP+NSPDTNILDLGFFN++QSLQDR TPRTVD+ +  VK A+++ S    ++VW+SLQA LQ I+LA G+N +KLPH++K     +G ++P +L  +AEA
Sbjct:   80 RKTNRCCNFTGKLGIFQFTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWP------GGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ-IILAKGNNTFKLPHLKKDNAANSGRSIPKELPLSAEA 283          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: A0A8I6WKB7_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WKB7_HORVV)

HSP 1 Score: 211 bits (537), Expect = 3.760e-64
Identity = 112/236 (47.46%), Postives = 156/236 (66.10%), Query Frame = 3
Query:  111 EPASPTQEPHHQGGV--LGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVEVTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAW 812
            EP    Q     G V  L AVARP+ ++  N  F GKIG++PF ++  AQR S NR  GT+ TK+++V ++  ++ M+++++P I+S +P   A      + ++I+QDNA+PH++ NDPE   A++  G DIRLI QPANSPD N LDLGFFNS+QSL D  +PRT+ DL+K V E ++     KLNRV+LSLQAC+ EI+   G N YK+PHV K RLE+ G LP +L C  E +
Sbjct:   29 EPTRTIQSGASIGNVMFLTAVARPKWDSEGNVTFSGKIGIWPFVKEIPAQRKSDNRPRGTMETKSIKVNRQVMREFMIENLLPAIQSSWPDNDAG-----QTIFIKQDNAKPHILPNDPEFLVAVESTGLDIRLIQQPANSPDLNGLDLGFFNSLQSLTDCLSPRTLQDLIKGVLEEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHVNKERLESLGLLPQRLTCPQEVY 259          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: A0A834FW95_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FW95_RHOSS)

HSP 1 Score: 212 bits (539), Expect = 2.180e-62
Identity = 110/221 (49.77%), Postives = 153/221 (69.23%), Query Frame = 3
Query:  156 LGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVE-VTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAWE 815
            L AVARPR       +F GKIG++PFT +E A+R S+NR AGT+ TK V  VTK+  +  +++ VIP I+S++     + S+  + ++IQQDNARPH+  ND E   A   +G+DIRL NQPANSPD N+LDLGFFN+IQSLQ +  PRT+D LV AV++++ +    +L+ V+LSLQAC+ E+M   G N+YKLPH++K +L   G LP+QLEC  +  E
Sbjct:  218 LAAVARPRFGANGCEEFSGKIGIFPFTVKEPAKRTSKNRLAGTMETKAVAAVTKDVIRSYLIEKVIPAIQSKW-----HQSSVGETIYIQQDNARPHIKPNDVEFHEAATRNGFDIRLTNQPANSPDLNVLDLGFFNAIQSLQHQEAPRTIDQLVNAVEKSFDKLPSRELDSVFLSLQACMVEVMKVNGGNNYKLPHIKKPQLRRDGVLPFQLECGRDVME 433          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: UPI000E6FC7BC (uncharacterized protein LOC113359119 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC7BC)

HSP 1 Score: 206 bits (523), Expect = 3.260e-62
Identity = 109/217 (50.23%), Postives = 148/217 (68.20%), Query Frame = 3
Query:  156 LGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTV-EVTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTA 803
            L  VARPR ++ NN +F GKIG++PFT QE AQRNS+NR AGT+ TK +  VTK+  +  +++ V+P I+S++PR     S+  + ++IQQDNARPH+  ND E       DG+DIRL  QP NSPD N+LDLG+F +IQSLQ R  P T+D+LV+AV+E+++  S   LN V+L+ Q C+ E M   G N+YK+ H+ K RL   G LP QLEC A
Sbjct:   33 LAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKAILSVTKDVIRSCLINKVLPAIRSKWPR-----SSNMEPIFIQQDNARPHINPNDQEFLEDASKDGFDIRLSFQPPNSPDFNVLDLGYFRAIQSLQYRYAPSTIDELVQAVQESFENLSSKNLNYVFLTFQGCMIESMKQLGGNNYKVSHMAKDRLARNGNLPIQLECDA 244          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: A0A452XZT7_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XZT7_AEGTS)

HSP 1 Score: 208 bits (530), Expect = 5.430e-62
Identity = 105/219 (47.95%), Postives = 149/219 (68.04%), Query Frame = 3
Query:  156 LGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVEVTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAW 812
            L AVARPR +   N  F GKIG++PF ++ +AQR S NR  GT+ TK+++V ++  ++ M+++++P I++ +P   A      + ++IQQDNA+PH++ NDPE  AA++  G DIRLI QP NSPD N L+LGFFNS+QSL D  +PRT+ DL+K V + ++     KLNRV+LSLQAC+ EI+   G N YK+PH  K RLE  G LP +L C  E +
Sbjct:  132 LTAVARPRWDNEGNVTFSGKIGIWPFVKEVSAQRRSDNRPRGTLETKSIKVNRQVMREFMIENLLPAIQASWPENDAG-----QTIYIQQDNAKPHILPNDPEFVAAVERTGLDIRLIQQPVNSPDLNGLELGFFNSLQSLTDCLSPRTLQDLIKGVLDEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHANKERLENLGMLPPRLTCPREVY 345          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 206 bits (525), Expect = 3.210e-61
Identity = 113/228 (49.56%), Postives = 150/228 (65.79%), Query Frame = 3
Query:  156 LGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVE-VTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAVLE 836
            L AVARPR        F GKIG++PFT  E A+RNS+NR AGT+VTK  E +TKE+ K  +++ VIP I +++P+         + + IQQDNA+PH+  N+ E   A   DG+DIRLI QP NSPD N+LDLGFF SIQ LQ    P T+++LV AVK+++ +    KLNRV+L+ Q C++EIM   GDNDYK+PH+ K RLE  GTLP Q+ C ++      A LE
Sbjct:  144 LAAVARPRNG------FSGKIGIFPFTFIEPAKRNSKNRVAGTMVTKVDESITKEKVKSCLIEKVIPAIHAKWPQGM-------RTIIIQQDNAKPHIDCNNAEFMQAASKDGFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLEREGTLPLQIRCESDLVNDVVAYLE 358          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA)

HSP 1 Score: 209 bits (531), Expect = 8.420e-61
Identity = 106/226 (46.90%), Postives = 149/226 (65.93%), Query Frame = 3
Query:  156 LGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVEVTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAVL 833
            L AVARPR N   +  FDGKIG + FT    AQRNSRNR +GT+VT  V V+++ Y+ M++++VIP IK+++P       A    + IQQDNARPH+   D  V AA + DGWDI +  QP NSPD N+LDLGFF +IQSLQ+RT  RT+D+L+ A   AW       LN  +L+LQ+C+ E + +GG+N+YK+PH++K  +   G LP  +EC  + ++ G A++
Sbjct:  205 LSAVARPRWNYNKDEWFDGKIGTWHFTEVVPAQRNSRNRPSGTLVTVPVNVSRDTYRDMLVNNVIPAIKNKWP------DARTSCIVIQQDNARPHVTTTDKGVLAACKADGWDIAMECQPPNSPDLNVLDLGFFRAIQSLQERTRCRTIDELIAATLSAWVSVDASTLNANFLTLQSCMVETIRSGGNNNYKVPHMKKAPMMKQGRLPDAIECPRDVFDHGLALM 424          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: A0A6A4ZY01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZY01_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.340e-60
Identity = 113/248 (45.56%), Postives = 152/248 (61.29%), Query Frame = 3
Query:   93 RQRACPEPASPTQEPHHQGGVLGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVEVTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAVLE 836
            +QRAC       +  HH    L AVARPR + T    FDGK+G + FT    AQR S  R AGT V KTV VT+E YK M++D  IP I++++PR       + K V IQQDNA+PH+  +D +V AA + DGWD+ ++ QP NSPD N+LDLGFF +IQ+LQ      +++++V A   AW   S   LN+ +L+LQ CLQE++L  G NDYK+ H+RK  L   G LP  + C  +AW  G A L+
Sbjct:  117 KQRAC-------KSKHHLVMFLTAVARPRWDETCGEWFDGKLGTWHFTEIVPAQRRSSRRDAGTPVMKTVSVTRETYKAMLVDKDIPAIRAKWPR------GDTKAVKIQQDNAQPHVPPSDVDVVAACKADGWDMEVVFQPPNSPDLNVLDLGFFRAIQALQTEKHSSSLEEIVAATDAAWDVVSTKTLNKNFLTLQRCLQEVILNKGGNDYKIAHMRKDVLHARGKLPEMVSCDRDAWSFGCAYLD 351          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: UPI00125DF384 (uncharacterized protein LOC116015901 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125DF384)

HSP 1 Score: 205 bits (522), Expect = 3.090e-60
Identity = 109/228 (47.81%), Postives = 153/228 (67.11%), Query Frame = 3
Query:  156 LGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVE-VTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAWEKGAAVLE 836
            L AVARPR ++  N  FDGKIG++PF  +EAA+R S+NR AGT+VTK +E V KE  +K ++D+V+P I++++      + +  K ++IQQDNARPH+  ND E   A Q DG+DIRL  QP NSPD N+LDLGFF +IQSLQ +  PR VD+LV A ++A+   S   L+ V+L+LQ C+ E+M   G N+YK+PH+ K +LE  G LP  + C  E   +  + L+
Sbjct:  187 LCAVARPRFDSGRNEMFDGKIGIFPFIYKEAAKRRSKNREAGTLVTKPIESVNKEVTRKWLIDYVLPAIRAKW------SLSSSKSIFIQQDNARPHISVNDAEFLEAAQKDGFDIRLTCQPPNSPDMNVLDLGFFRAIQSLQYQEAPRNVDELVVATQKAFDDISIESLSNVFLTLQLCMVEVMKRFGGNNYKIPHINKQKLEREGRLPTTISCDMEVLNEAISSLQ 408          
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Match: UPI0019D5B331 (uncharacterized protein LOC120641424 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5B331)

HSP 1 Score: 207 bits (526), Expect = 2.120e-59
Identity = 107/225 (47.56%), Postives = 144/225 (64.00%), Query Frame = 3
Query:  141 HQGGVLGAVARPRRNTTNNTDFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVEVTKERYKKMMLDHVIPDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDIRLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNSGVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECTAEAWE 815
            H+   L AV +PR +   N  FDGKIG++PF R+E AQR S NRA GT+VTKT++V ++  +  M+  V+P I + +P+  A      K +WIQQDNAR H++ ND +   A+   G DIRL+NQPANSPD N+LDLGFF S+QS    TT   +D+L+  V++A+       L  V+L+LQ CL EIM AGG N YK+PH+ K RLE  G+LP  L C  +  E
Sbjct:  328 HKVMFLTAVTKPRYDNAGNCTFDGKIGIWPFVRKEPAQRRSGNRARGTLVTKTMKVDRDTIRSYMISKVLPAIVACWPKEDAG-----KTIWIQQDNARTHVLVNDEQFARAVAQTGLDIRLMNQPANSPDMNVLDLGFFASLQSFTYTTTSTNIDELIANVEKAYWDYDASNLRNVFLTLQGCLIEIMKAGGGNKYKIPHMNKERLEAMGSLPKSLNCDLQLIE 547          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE3.270e-6654.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8I6WKB7_HORVV3.760e-6447.46Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A834FW95_RHOSS2.180e-6249.77Uncharacterized protein n=3 Tax=Rhododendron simsi... [more]
UPI000E6FC7BC3.260e-6250.23uncharacterized protein LOC113359119 n=1 Tax=Papav... [more]
A0A452XZT7_AEGTS5.430e-6247.95Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
UPI0007F012D13.210e-6149.56uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]
A0A485KBU5_9STRA8.420e-6146.90Aste57867_2438 protein n=2 Tax=Aphanomyces stellat... [more]
A0A6A4ZY01_9STRA2.340e-6045.56Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI00125DF3843.090e-6047.81uncharacterized protein LOC116015901 n=1 Tax=Ipomo... [more]
UPI0019D5B3312.120e-5947.56uncharacterized protein LOC120641424 n=1 Tax=Panic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:534814..535649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog38727.Pavir.Ga00690.1.p
Model size836
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.03e-60
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta,3M2XW@4447|Liliopsida,3IN2T@38820|Poales
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791359.6381814-CDS-P-littoralis_Contig65:534813..5355991680791359.6381814-CDS-P-littoralis_Contig65:534813..535599Pylaiella littoralis U1_48CDSP-littoralis_Contig65 534814..535599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791359.6503634-UTR-P-littoralis_Contig65:535599..5356491680791359.6503634-UTR-P-littoralis_Contig65:535599..535649Pylaiella littoralis U1_48UTRP-littoralis_Contig65 535600..535649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.103.1prot_P-littoralis_Contig65.103.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 534814..535599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.103.1

>prot_P-littoralis_Contig65.103.1 ID=prot_P-littoralis_Contig65.103.1|Name=mRNA_P-littoralis_Contig65.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=262bp
MVLHLQCEAEVLRARQRACPEPASPTQEPHHQGGVLGAVARPRRNTTNNT
DFDGKIGLYPFTRQEAAQRNSRNRAAGTIVTKTVEVTKERYKKMMLDHVI
PDIKSRFPRPPANASAEDKIVWIQQDNARPHLINNDPEVRAAMQVDGWDI
RLINQPANSPDTNILDLGFFNSIQSLQDRTTPRTVDDLVKAVKEAWQQNS
GVKLNRVWLSLQACLQEIMLAGGDNDYKLPHVRKGRLETAGTLPWQLECT
AEAWEKGAAVLE
back to top

mRNA from alignment at P-littoralis_Contig65:534814..535649-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.103.1 ID=mRNA_P-littoralis_Contig65.103.1|Name=mRNA_P-littoralis_Contig65.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=836bp|location=Sequence derived from alignment at P-littoralis_Contig65:534814..535649- (Pylaiella littoralis U1_48)
GGTACTCGCAGATTCAGTGGGATGGGAAACGTGGTGTGTGTTGACGAGAA ATGGTTTTACATCTACAATGTGAAGCAGAGGTATTACGTGCGCGACAACG AGCCTGCCCCGAGCCGGCAAGTCCAACACAAGAGCCACATCACCAAGGTG GTGTTCTGGGAGCTGTTGCGCGGCCGAGGCGCAACACCACCAACAACACC GATTTCGACGGGAAGATCGGCCTGTATCCGTTCACCAGACAAGAGGCGGC CCAGAGAAACAGCCGGAACAGGGCTGCCGGAACAATTGTTACGAAGACAG TGGAGGTGACCAAGGAGCGATACAAGAAGATGATGCTCGATCATGTCATC CCAGATATCAAGAGCCGGTTCCCCCGCCCTCCGGCCAACGCCAGTGCCGA AGACAAGATCGTCTGGATACAGCAGGACAACGCCCGTCCCCACCTAATCA ACAATGACCCAGAGGTGAGGGCCGCAATGCAGGTGGACGGGTGGGACATC CGGCTTATCAATCAGCCCGCCAATAGCCCGGACACAAACATCCTCGATTT GGGTTTTTTTAACTCGATTCAATCCCTGCAAGACCGCACGACCCCGAGGA CCGTGGATGACCTGGTGAAGGCCGTGAAGGAGGCATGGCAACAGAATTCG GGGGTCAAACTCAACCGGGTGTGGCTCAGTCTACAGGCGTGCCTGCAGGA AATCATGCTCGCGGGTGGTGACAACGATTACAAGTTGCCGCATGTTCGCA AGGGCCGGCTCGAAACCGCGGGTACGCTGCCCTGGCAGCTGGAATGCACG GCGGAGGCATGGGAGAAGGGTGCTGCGGTCCTGGAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig65:534814..535649-

>mRNA_P-littoralis_Contig65.103.1 ID=mRNA_P-littoralis_Contig65.103.1|Name=mRNA_P-littoralis_Contig65.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig65:534814..535649- (Pylaiella littoralis U1_48)
ATGGTTTTACATCTACAATGTGAAGCAGAGGTATTACGTGCGCGACAACG
AGCCTGCCCCGAGCCGGCAAGTCCAACACAAGAGCCACATCACCAAGGTG
GTGTTCTGGGAGCTGTTGCGCGGCCGAGGCGCAACACCACCAACAACACC
GATTTCGACGGGAAGATCGGCCTGTATCCGTTCACCAGACAAGAGGCGGC
CCAGAGAAACAGCCGGAACAGGGCTGCCGGAACAATTGTTACGAAGACAG
TGGAGGTGACCAAGGAGCGATACAAGAAGATGATGCTCGATCATGTCATC
CCAGATATCAAGAGCCGGTTCCCCCGCCCTCCGGCCAACGCCAGTGCCGA
AGACAAGATCGTCTGGATACAGCAGGACAACGCCCGTCCCCACCTAATCA
ACAATGACCCAGAGGTGAGGGCCGCAATGCAGGTGGACGGGTGGGACATC
CGGCTTATCAATCAGCCCGCCAATAGCCCGGACACAAACATCCTCGATTT
GGGTTTTTTTAACTCGATTCAATCCCTGCAAGACCGCACGACCCCGAGGA
CCGTGGATGACCTGGTGAAGGCCGTGAAGGAGGCATGGCAACAGAATTCG
GGGGTCAAACTCAACCGGGTGTGGCTCAGTCTACAGGCGTGCCTGCAGGA
AATCATGCTCGCGGGTGGTGACAACGATTACAAGTTGCCGCATGTTCGCA
AGGGCCGGCTCGAAACCGCGGGTACGCTGCCCTGGCAGCTGGAATGCACG
GCGGAGGCATGGGAGAAGGGTGCTGCGGTCCTGGAA
back to top