mRNA_P-littoralis_Contig65.90.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: D8LQJ6_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ6_ECTSI) HSP 1 Score: 421 bits (1082), Expect = 1.070e-139 Identity = 220/322 (68.32%), Postives = 254/322 (78.88%), Query Frame = 2
Query: 290 NNGIGEMAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIHCGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEMESYGWVQNSIGQRHNFIPCPQPLLPTTVDDQQQQIPSAGGPWHSFCGPPLAAIGAGRRSLSSWVHGVIGRLRGRSPGAVNDSGNTAVGSGTGISSEARDSQDRGRLLPWG 1255
NN +GE+AGQVPLCTL FATLCI LQ F+F T++ NYVLIPSR+IYLGEYYR+IT ALLH GLMHIVFNMMSFLSIGS LE+A G+LSLLFTILWSM+LAGV+HCGAEW MTVW+TH+ YVNQ SVGFSGVIFTLAL+ESYRSTQPTRSVFGM++VPTR+YPWVLLVLLSVFM ISF+GHLSGILVGVMHVYGLTKPLMPS +IEMESY WV++SIG RHNF+P P P LPTT D+Q+Q PS W S C +IGA RRSL + V R S N +G + +G+ + +++ RGRLLPWG
Sbjct: 3 NNNLGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSSLEVAFGTLSLLFTILWSMILAGVVHCGAEWVMTVWVTHDPTYVNQPSVGFSGVIFTLALMESYRSTQPTRSVFGMMRVPTRMYPWVLLVLLSVFMRDISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVRDSIGLRHNFVPYPPPALPTTADEQEQPGPSIRDSWQSCCD----SIGACRRSLGN----VAARFGASSAHGQNANGRNSNTAGSVGADSRGETETRGRLLPWG 316
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: A0A835Z1X9_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X9_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.650e-60 Identity = 108/234 (46.15%), Postives = 156/234 (66.67%), Query Frame = 2
Query: 299 IGEMAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIHCGAEW--AMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPG-ISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEMESYGWVQNSIGQRHNFIPCPQP 991
+GE G VPLCTLC +C + + FL T + Y ++ V+YLGE+YRIITAA +H+ +MHI FNMMS L+IG GLE G++++ T+ WS++L G ++C EW A H +++ Q +VGFSGVIFTLA++E+ RS++P R + GM++VPT++YPW L+++L V M G +SFMGHL+G +VG++H YGLT PL+PS +ME + + NF CP P
Sbjct: 5 LGEALGGVPLCTLCVVAMCCAVHLAIFLLDTPITMYSIMARNVLYLGEWYRIITAAFVHASMMHIGFNMMSLLAIGGGLESDLGTVAMTMTVWWSVILVGGLYCAGEWLFADVRGGEHAREHLLQQAVGFSGVIFTLAVMEAQRSSEPYRMLMGMVKVPTKLYPWALMIVLQVMMKGEVSFMGHLAGAIVGILHTYGLTAPLLPSKQMLHDMEDWPGISAMAAALPNFKRCPPP 238
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: A0A7S2GX31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GX31_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.180e-46 Identity = 105/251 (41.83%), Postives = 143/251 (56.97%), Query Frame = 2
Query: 299 IGEMAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIHCGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKP-LMPSAGSFIEMESYGWVQNSIGQ----RHNFIPCPQPLLPTTVDDQQQQIPS 1036
+ E +PL TL LC + Y LF L Y + P V+YL EYYRIIT+ L HSG +H NM S +I S LE G+L + TILW M+L +++ WAM + + Q SVGFSGVIF L++LES + TRSVFG I+VP+ +YPW LLV+L V +P ISF+GHLSGILVG + +YG+ P ++PS +ME ++ N I R F+ P L ++ ++ PS
Sbjct: 4 LSETLASIPLATLSIIALCTIIFTYQLLFDPPLHQYTMCPRNVLYLSEYYRIITSNLFHSGFLHFFMNMSSTAAISSSLEHRYGTLKQMVTILWGMILTSIVYMIISWAMYMIFGYEKSMF-QHSVGFSGVIFQLSVLESNINLDRTRSVFGFIKVPSYLYPWALLVVLQVLIPAISFLGHLSGILVGTLQLYGILDPFVLPSDDYLRKMEDRSFIANFINSSSQYRGQFVRAPPELSAEGENNSGRRNPS 253
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: B8C3M6_THAPS (Rhomboid domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M6_THAPS) HSP 1 Score: 170 bits (430), Expect = 1.180e-43 Identity = 97/237 (40.93%), Postives = 144/237 (60.76%), Query Frame = 2
Query: 305 EMAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIHCGAEWAMTVWITHN-MQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEMESYGWVQNSIGQRHNFIPCPQPLLPTTVD 1012
E +PL TL LC + +Y F L N+ + P V+Y+ EYYRIIT++L H LMHI NMMS ++IG+ LE G+ ++ T+LW ++L VI+ W + V + M Y Q S+GFSGVIF L++LE+ + +RSVFGMIQV +++YPW LLV+L MP ISF+GHLSGIL+G + ++G K + PS ++E++ ++ +I + F+ P+ P D
Sbjct: 6 ETLASIPLATLSIMALCCFVYLYQLAFDPTLHNFTMCPRLVLYMNEYYRIITSSLFHGSLMHIGMNMMSTMAIGTSLEKRFGTFTMALTVLWGVLLTSVIYMTTSWLLYVGFGYEKMMY--QHSLGFSGVIFQLSVLEANLTPNRSRSVFGMIQVSSKMYPWCLLVVLQFIMPQISFLGHLSGILLGTLQLHGADK-IFPSDAYLQDLETWSALE-AITTKPGFVKMPETGSPLNRD 238
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: W7TU50_9STRA (Peptidase S54, rhomboid domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU50_9STRA) HSP 1 Score: 168 bits (426), Expect = 6.400e-42 Identity = 91/209 (43.54%), Postives = 134/209 (64.11%), Query Frame = 2
Query: 305 EMAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIHCGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRST-QPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEME 928
E ++PLCT LC+ LQ+ + +++ + + + V+Y EYYR+ T+A H GL HI NM+SF+ IG+ LEM G++ TILWS +L ++ G + +T++ Q++ AS GFSGVIFTLA+LES+ S TRS+ GM QVP R YPWVLL+++ + +P ISF+GHLSG+L+GV+ YG L PS+G+ +E
Sbjct: 43 ETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAA-VTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLE 250
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: A0A7S1UGS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGS1_9STRA) HSP 1 Score: 164 bits (414), Expect = 9.080e-42 Identity = 89/217 (41.01%), Postives = 137/217 (63.13%), Query Frame = 2
Query: 350 LCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIHCGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEMESYGWVQNSIGQRHNFIPCPQPLLP 1000
+C+ LQ+Y F L +Y + V Y GE YRIIT+A H+G +H+ FNMMS L+I LE G+ + ++W+++L G++ C W M+ ++T + +V Q S+G+SGV+FTLA+LES+R P RSVFG+ V +++YPWVLLV + + SF+GHLSG +VG++ +GL + LMPS+G F++ V + + +F+ CPQ P
Sbjct: 37 VCVALQLYVFFMEPVLAHYTISARTVFYGGELYRIITSAFFHAGWLHLAFNMMSTLAIQGMLERKIGTGLMALVVVWAVLLGGLLLCAINWTMS-YVTGGLDWVTQNSIGYSGVLFTLAVLESHRKDAPQRSVFGLFFVSSKVYPWVLLVAIQFLIRNASFVGHLSGAIVGLLLNFGLARVLMPSSG-FMQTN----VDPCLQRLPDFVRCPQDPWP 247
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: A0A812V7G2_9DINO (RBL15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812V7G2_9DINO) HSP 1 Score: 160 bits (406), Expect = 7.330e-40 Identity = 106/287 (36.93%), Postives = 163/287 (56.79%), Query Frame = 2
Query: 308 MAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIH---CGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEMESYGWVQNSIGQRHNFIPCPQPLLPTTVDDQQQQIPSAGGPWHSFCGPPLAAIGAGRRSLSSWVH-GVIGRLRGRSPG 1156
+ G +P T FA +C + + FA D + V++LGE++R+ ++A LH G++HI+ NM S L++G +E G+ + +L +++L G+I+ C WA +T + +++ +VGFSGV+FTLA+ E+ S PTRSVFG+ +VPTR+YPWVLLVLL +P ISF+GHLSG+LVGV+HV GL L+PS S +E+ + R N + CP P + D + AG F LA + + +L ++ H G + R + PG
Sbjct: 5 LPGGLPAGTALFAGICAAVFGVQYAFAVDTGPLAIGAFPVVFLGEWFRLASSAFLHGGILHILMNMASLLAMGPSVESILGTAQFVTLVLAAVLLEGLIYVCVCVGCWA----VTSDAAWLHMYAVGFSGVLFTLAVEEASLSPNPTRSVFGLFRVPTRLYPWVLLVLLQFAIPNISFLGHLSGLLVGVLHVGGLLAWLLPSMESSRFLETLPVAR---ALRANGMLCPTP----SSDPVAEAARRAGANGTCFGTVALAFVALWQGALPAFAHAGGVDRQKMAPPG 280
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: A0A7S0FT53_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FT53_9STRA) HSP 1 Score: 157 bits (397), Expect = 4.740e-39 Identity = 98/232 (42.24%), Postives = 133/232 (57.33%), Query Frame = 2
Query: 305 EMAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAG----VIHCGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPL-MPSAGSFIEMESYGWVQNSIGQRHNFIPCP 985
E+A +PL LC+ + + + DL ++ L P V+Y EYYRI T+ + H GL+HI FNMMS +IGS LE G+L LFT+ M L ++ C WA + V Q SVGFSGV+F L++LE+ S TRSVFGM+QVP +YPW LLV L +FMP ISF+GHLSGI VG + +YG+ L +PS M+ + +Q I R ++ P
Sbjct: 6 EVAASIPLGNRFIIGLCVCVFLLQTILNLDLHDFTLCPRNVLYQHEYYRIFTSCVFHGGLLHIGFNMMSTAAIGSLLEKRFGTLRHLFTVFLGMFLTSWTYILVACLLSWAC-----RYDKLVYQHSVGFSGVLFQLSVLEANLSPNSTRSVFGMVQVPAYLYPWALLVALQIFMPNISFVGHLSGIFVGTLQLYGVLDALVLPSDEYLRAMDDWPSLQQ-IAAREGYVRTP 231
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: B7FT28_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FT28_PHATC) HSP 1 Score: 156 bits (394), Expect = 5.690e-39 Identity = 96/226 (42.48%), Postives = 135/226 (59.73%), Query Frame = 2
Query: 305 EMAGQVPLCTLCFATLCIGLQVYG-FLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIHCGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEMESYGWVQNSIGQRHNFIP 979
E+ + P T LC+ L V L +L + L P VIY E YRI T+AL H +MH+ NMM+ L+IGS LE G+ LL ILWS++L G+++ G + + I N Q + Q SVGFSGVIF L++LES T +RSVFG VP+ +YPWVLLV L +FMPG+SF GHL GILVG + +YG ++ ++++ + + + ++HNF P
Sbjct: 6 ELLQRTPQTTTGIIALCVILHVVTKVLLDLNLRIFTLCPQLVIYRLEIYRIATSALFHGNIMHLAMNMMTTLAIGSLLEKRFGTFRLLLIILWSILLTGILYIGIALFLAIIIQKN-QLMRQHSVGFSGVIFHLSVLESNLGTHQSRSVFGFFDVPSYLYPWVLLVGLQIFMPGLSFTGHLVGILVGTLQLYGGLNWILWGEERLKRVDNWSRL-DFLTRQHNFCP 229
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Match: A0A7S0K707_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K707_CAFRO) HSP 1 Score: 158 bits (400), Expect = 1.350e-38 Identity = 100/277 (36.10%), Postives = 156/277 (56.32%), Query Frame = 2
Query: 308 MAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIYLGEYYRIITAALLHSGLMHIVFNMMSFLSIGSGLEMACGSLSLLFTILWSMVLAGVIH---CGAEWAMTVWITHNMQYVNQASVGFSGVIFTLALLESYRSTQPTRSVFGMIQVPTRIYPWVLLVLLSVFMPGISFMGHLSGILVGVMHVYGLTKPLMPSAGSFIEMESYGWVQNSIGQRHNFIPCPQPLLPTTVDDQQQQIPSAGGPWHSFCGPPLAAIGAGRRSLSSWVHGVI 1129
+ G +P T FA +C + + FA D + V++LGE++R+ ++A LH G++HI+ NM S L++G +E G+ + +L +++L G+I+ C WA +T + +++ +VGFSGV+FTLA+ E+ S PTRSVFG+ +VPTR+YPWVLLVLL +P ISF+GHLSG+LVGV+HV GL L+PS S +E+ + R N + CP P + ++ A G A+ G + +W+ G +
Sbjct: 5 LPGGLPAGTALFAGICAAVFGVQYAFAVDTGPLAIGAFPVVFLGEWFRLASSAFLHGGILHILMNMASLLAMGPSVESILGTAQFVTLVLAAVLLEGLIYVCVCVGCWA----VTSDAAWLHMYAVGFSGVLFTLAVEEASLSPNPTRSVFGLFRVPTRLYPWVLLVLLQFAIPNISFLGHLSGLLVGVLHVGGLLAWLLPSMESSRFLETLPVAR---ALRANGMLCPTPSSDPVAEAARRA--GANGTCFGTVALAFVALWQGVWPVLAWLWGGV 272 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.90.1 >prot_P-littoralis_Contig65.90.1 ID=prot_P-littoralis_Contig65.90.1|Name=mRNA_P-littoralis_Contig65.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=327bp MSNNNGIGEMAGQVPLCTLCFATLCIGLQVYGFLFATDLDNYVLIPSRVIback to top mRNA from alignment at P-littoralis_Contig65:501931..513901+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig65.90.1 ID=mRNA_P-littoralis_Contig65.90.1|Name=mRNA_P-littoralis_Contig65.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11971bp|location=Sequence derived from alignment at P-littoralis_Contig65:501931..513901+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig65:501931..513901+ >mRNA_P-littoralis_Contig65.90.1 ID=mRNA_P-littoralis_Contig65.90.1|Name=mRNA_P-littoralis_Contig65.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig65:501931..513901+ (Pylaiella littoralis U1_48)back to top |