mRNA_P-littoralis_Contig1168.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1168.17.1
Unique NamemRNA_P-littoralis_Contig1168.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1168.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1168contigP-littoralis_Contig1168:53468..57330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size789
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.4233015-CDS-P-littoralis_Contig1168:53467..535091680789485.4233015-CDS-P-littoralis_Contig1168:53467..53509Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 53468..53509 +
1680789485.4331932-CDS-P-littoralis_Contig1168:56584..570101680789485.4331932-CDS-P-littoralis_Contig1168:56584..57010Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 56585..57010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.4429276-UTR-P-littoralis_Contig1168:57010..573301680789485.4429276-UTR-P-littoralis_Contig1168:57010..57330Pylaiella littoralis U1_48UTRP-littoralis_Contig1168 57011..57330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1168.17.1prot_P-littoralis_Contig1168.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1168 53468..57010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1168.17.1

>prot_P-littoralis_Contig1168.17.1 ID=prot_P-littoralis_Contig1168.17.1|Name=mRNA_P-littoralis_Contig1168.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
HSDDLHRRCQRRTKPRTCYQHRSLSLHNAITGAAKGGPGWTQPQNPDGAQ
QEGSRDQRWAHSPKLRPVGEACPEIGRSPGRGKSKPHPPGESCWTYHVIQ
KGLRTYKRIRIILPCFRRRFVLPLCKLLIRMVCTKPIGSAVYIKATLIGI
ENISG*
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mRNA from alignment at P-littoralis_Contig1168:53468..57330+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1168.17.1 ID=mRNA_P-littoralis_Contig1168.17.1|Name=mRNA_P-littoralis_Contig1168.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3863bp|location=Sequence derived from alignment at P-littoralis_Contig1168:53468..57330+ (Pylaiella littoralis U1_48)
CACTCTGACGACTTGCACCGAAGATGCCAAAGACGCACCAAAGTGAGTGT
GTGCTGCTGAACGATGAAGTATGTCCAAGCATGTATGGAGCCTATGGAGA
TAGACCACATATTATGTAGTTCTGTACCAAGCATGCATGCATAATTCAGA
ACAAGCATCTCAGCATCGAATATCGCAGCGCAGCAGTCCCCATTCCTAGA
AGTCTGGGCCACGCAGTGCTCCTCAAGTGTGCCGATGATTCTATAGCTTT
GTCGAACTTATGGAACACGGGCACCGTTGTTGCTTCAATCCCACAGGAGC
GGGGAAAAGGCAGTGCTCTTTACTCTCCTGCCGTCGTCCACAATGAAGTT
TGCTTTTCGCGCACTTTCCCCAGGCTTTTTCTCTCCTGGCGCATTATTTT
CCATTTTCCTTTCCATTCTCCTTTTTCCCAACGGGTTTTACTCCAATCCC
AATCAAATCATCATGTGTATCACACTGCTGTACAGAGAACACTCCTGTTG
CATGCACTTCTGTCCTGGTAGCACTTACCGAACTGCGGGTATTACGTTAC
CGGGTACCCGGAAACTAGGTTTCCTCCAAGCACACAGCAGCCTCAATCCT
ACAAGCATACTCCGAGTATACGATATGAAATTTGAGACTGTCGTACTTGA
CGCCTCAAGGTCCCAGGTTCGATTCCCTCATGAAGCACTTATTTTATTTT
CGAAAACAAAACGAAAATAATACAGAAATAATACAGGTAATTTTTTCTTC
ATAAATAGACTACTGCTGCTGCTGTGTTTTTCCGAGCCTCATATTCGAAG
TACCAGGTACAAATGTTTTTTTATCCTTTATCTTTGCTTTTCCACCGGTT
GGCTGTGAAGAAAAAGAGGAGTATTATTTTTTAGGTAACGGGAAATAAAC
AACCAGCAGCGGCTAGTTGCTCTTCCGTAGGAACACTTCCCTACTTTTTT
TCACGCGGGAAGACGGAATTTTGTTTTTCGGGAACCGGGACGGGGCGCAT
ATTAGTTAGACGTGGCGGGACGGGGAGATTATTATTTCTTAGTTAAATTT
GTTCTTAGGGCCGGGATGGGACTGAAGTTTTTTTGCGGTACTGAAGCATT
TTTTCGGCGAGGCGGGACGGAAACTTGCAAGGGCGATTTCCTTCCCGCCA
GTCGTCTATGTAACGCTTATATATTTTTGGCAACGAGGATGCATATATTT
TTTTTCTTACAAACACATCAATGTGTTCGCCTCGAGGATGCTTACATGTA
AAACTCGATTTCATATCCATGGAAACATGATCTCCGGAAATTTCTTAGAA
GGCATGAGGGGTGACGTACGTGCGGTCAACCTGTTGTTGGGGAATTCTGG
AAATACCAACCGACAGATCCATCTGACCACACTTGAGTACTGCAAAGTAC
TTGGAAAATATACCGCTTGTTCTACGGCCTGAAAAGTAATTACAGCAGCA
GCAGAACACATCCGATAGAGCGCGATGCTGACGCAGTCTGTCGATTGAAG
GACCCCACCTCAAACGCAACACCTTGATGACGGACACCAGCACAATGAGG
CAACAGCCACGAAGGTCGCGTTGACTTGTGTAGGTACCAATATCTGACTG
CTGCTGTGGTGTTGTCAAATGTCTTGGCTGGATATTGTCCTCCCGCATCT
CATCATAATTCGCCACCTTCAAAAAATGAAGGGCGACTCTCAATCAAATC
GTTTCTTTTCGAACGCCTGGCCAACTCACATACCAGCGGCCGGACTGGTA
ACGCGGTGGCTCTACGGCCACTTCGATGCCCCCACGAGGTCACGATTACG
TGCAGGTCTCACGGCGTGCTGCCACTGCTGTGTGTGCACACTTATTTGGA
CGATATGAAAATATTGAACGTGGAAACATCCTAGAAATCTGGAAAGGATT
TGGGCCACTTTTTTGGCCCGAGTATTGCAAATATGGACAAACGCCTCCAT
ATTATTCCATACATATGTAAACTGGAAATTTCCATTATATGGACAAATAT
GGAAATTTCCAGATATATAAAATATTAAATATGTGTTCCATATATATAAA
ATATTAAATATGGACGTCATGTGATGCTTAAAACGACCCTTCCTTACAGC
CCCGAACCTTGGTTCTGCCCGACGCACATGAGAAAAACCTCGGTCATGCC
CAACGTACAATAGACAAATGTATATATCGCATATCGCGCCCTTCAGTCGG
CTGCAGGGTGTACATGTACATGCACACCCACATTAACCCTCCTGATACTA
GGCTCCGTGACACAGGTGGCTAGTCGAGAAACCTGTTTTTTCTTGTCGTT
CTAAAAGGTACCGTTTCGTGCAACCTCGCCGCGTTATGCCTGTAAATCGC
CTCGAGAATTGCAGCAGCACAGCAGCCATGGCACGAGCTAGAAATACGCA
GGGGCCGCGGCAAAGGCCCGCAATAGGCTGAATAGGTTGGGGTTAGATAG
TAGGAGGATTCCCAGCCGCTAGTACGAGCCGACAGAGGTAGCATGTTGTA
TCCCTGATTCCGGTGTGTTTGCTCCTGCTCTCTATTTGAAGTATACATCC
TATTGCCTGGAAAAATCGCCCGATTTTTCCCGGCTGAAGGTTTTCCTGTA
TCTGTAATTCTCTAATCCCCTGTGGTGGAGGAGGCCTTCGGCCTATTTAG
CGTACCCATTGCTGCTGCTGCCTGGTGAAGGCTCTCGTAAAAAAGCACAC
AACCTTGCCTGTTCTTCCCGCGGTTGACGCTACCACCTACTACGCAGAGA
GAGGCCGCCACTACCGCCTGCTACAACCAATTCGTCTCGTTCACACGCAC
ACACACACACACACACACGCACGCACGTGTTTATGATTCCAGCGTCCGAG
TAGACCGGGCTGAAACAAAAAAAGAAAACATTGCCCGATTCTGTTGCCCA
ATTTCCCCTGAAGGCCCAGAAGGGGTAACAGGCCCACACTGTGTACTCAT
TAAATACTACCAGGGCTGCGATTTCCTTGATCATTTATCGTTAATTTTGT
GCCACACACGACGACTGCTCGGCCTACTGCCCTGACCCCCCCCTACTCTT
GCCCGCCGGCCTCAACACTCACTCACGCCTGTTGATGGTTCGGCTGCATG
AATCGTTCATCAAACAGCCGAGGACGTGTTATCAACACCGATCACTCTCC
TTGCACAATGCGATCACCGGGGCTGCTAAAGGAGGACCTGGCTGGACTCA
ACCGCAGAATCCAGACGGTGCTCAACAAGAAGGGAGCAGGGATCAAAGAT
GGGCTCACAGCCCAAAATTGCGCCCGGTTGGTGAGGCATGCCCAGAAATC
GGCCGATCCCCTGGCCGGGGAAAAAGCAAACCCCATCCCCCCGGTGAGTC
GTGTTGGACGTATCATGTCATACAGAAAGGCCTCCGTACATACAAACGAA
TCCGCATTATTCTTCCCTGCTTTCGAAGGAGGTTTGTCCTACCGTTGTGC
AAGTTGTTGATACGGATGGTGTGCACAAAGCCAATAGGATCGGCCGTTTA
TATTAAAGCAACTTTAATCGGAATCGAAAATATTAGTGGGTAGCCAAACT
TACTCCCGCACATGCGGCGCATCAAGCAGATTTTTTATTTCGCCCTTATT
ATTCCGGAAGCTGAAGGAAAGGGTGGAATCGAAGAAGTCCGAGTTTGTAG
TCTAAAATGCAGCTCAAAAATCGATTTGACCTAGAACACGAGCAGAGAGG
TTTTTGCTTTGCTTTCTGGGAGTACATAGGTGCACATCGATGTGTCTTTG
CGTACATAGTCGGTCACAGCCCAACTTGTATCCCCCTGTACGTATGTGTG
ACCTCGGCGAAAGCTGGTGTTCCGTAGATTACTAGAAAGGGGAAAGGAAT
TGAGAAGCAGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1168:53468..57330+

>mRNA_P-littoralis_Contig1168.17.1 ID=mRNA_P-littoralis_Contig1168.17.1|Name=mRNA_P-littoralis_Contig1168.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig1168:53468..57330+ (Pylaiella littoralis U1_48)
CACTCTGACGACTTGCACCGAAGATGCCAAAGACGCACCAAACCGAGGAC
GTGTTATCAACACCGATCACTCTCCTTGCACAATGCGATCACCGGGGCTG
CTAAAGGAGGACCTGGCTGGACTCAACCGCAGAATCCAGACGGTGCTCAA
CAAGAAGGGAGCAGGGATCAAAGATGGGCTCACAGCCCAAAATTGCGCCC
GGTTGGTGAGGCATGCCCAGAAATCGGCCGATCCCCTGGCCGGGGAAAAA
GCAAACCCCATCCCCCCGGTGAGTCGTGTTGGACGTATCATGTCATACAG
AAAGGCCTCCGTACATACAAACGAATCCGCATTATTCTTCCCTGCTTTCG
AAGGAGGTTTGTCCTACCGTTGTGCAAGTTGTTGATACGGATGGTGTGCA
CAAAGCCAATAGGATCGGCCGTTTATATTAAAGCAACTTTAATCGGAATC
GAAAATATTAGTGGGTAG
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