mRNA_P-littoralis_Contig65.68.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.68.2
Unique NamemRNA_P-littoralis_Contig65.68.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: D8LQK8_ECTSI (Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQK8_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 2.100e-141
Identity = 202/263 (76.81%), Postives = 226/263 (85.93%), Query Frame = 3 
Query:  237 MAFRSLGPRAGRKRGNILSSTAGASGSAKSSPTAGPPDLANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSE----AGGEEGEA--WTVTRLQP 1007
            MA R LG  + RKR   LS+T G      S  ++ PPDLANLRE+Y S+GID  TLP++PH+LM KWVEEAC C+EVIEPNAMCLATVGE GKPSARFVLMKG+DERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAM+SEEESD YF+CRPTGSKIGAWVSDQSEPI SR+EM  KA+E+ +AFASEGDNIPRPPHWGGFRL+P+RVEFWEGQPSRLHDRF+YSL S+    AGGE+ +A  WT+TRLQP
Sbjct:    1 MALRPLGRHSTRKR--TLSATTG------SQSSSAPPDLANLREHYVSTGIDRATLPSEPHILMVKWVEEACRCKEVIEPNAMCLATVGEGGKPSARFVLMKGYDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMVSEEESDTYFNCRPTGSKIGAWVSDQSEPIASREEMTLKAKEVEDAFASEGDNIPRPPHWGGFRLKPSRVEFWEGQPSRLHDRFMYSLASDDADGAGGEDAKAMPWTITRLQP 255
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: A0A7S2XW57_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW57_9STRA)

HSP 1 Score: 252 bits (643), Expect = 3.860e-76
Identity = 121/221 (54.75%), Postives = 154/221 (69.68%), Query Frame = 3 
Query:  351 LANLRENY-ESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEA-GKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            LA+ RE Y +  G+DE+ + + P+ L Q+W ++A N + V+EPNAMCL+T     G+PS+R+VL+KGFDERG  WYTNY SRK QEL A P A++ FWWG LHRSVR EG+V  +S EESDEYF  RP GS++GA VS QS P+ SR E+E K +E+TEA      ++ RPPHWGGFRL   RVEFW G+ SRLHDR VY+        E   W++ RLQP
Sbjct:   74 LADFREEYSKDEGLDESMVSSTPYPLFQRWFDDAKNAK-VVEPNAMCLSTTEPTNGRPSSRYVLLKGFDERGWVWYTNYESRKGQELSANPWASLVFWWGDLHRSVRIEGKVEKVSAEESDEYFYSRPVGSQLGAMVSTQSRPVQSRSELEAKFQELTEAAEKNPSSVVRPPHWGGFRLAADRVEFWHGRSSRLHDRLVYTRPDF----ESVTWSIERLQP 289
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: A0A836CLR6_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR6_9STRA)

HSP 1 Score: 248 bits (632), Expect = 2.540e-75
Identity = 117/222 (52.70%), Postives = 154/222 (69.37%), Query Frame = 3 
Query:  351 LANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFD-ERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASE--GDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            L +LRE Y +  ++E   P  P  L Q W+ +A     + +PNAMCLAT    G+PS+RFVL+KG D + G  +YTNY SRK++EL+A P AA TFWW  LHRSVR EG VA +S  ESD Y++ RP GS++GAWVSDQS+P+  RD M+ K +E+   F ++    ++PRPPHWGG+R+ P R+EFW G+PSRLHDR VY+ +SE GG  G  WT+ RLQP
Sbjct:   13 LPDLREEYRADPLEEGCAPGDPMELFQTWLADATRAG-LQDPNAMCLATATPEGRPSSRFVLLKGCDADGGFVFYTNYGSRKARELEANPFAAATFWWAPLHRSVRVEGAVARVSAAESDTYYASRPRGSRLGAWVSDQSQPVAGRDAMDAKQQEVEARFGADDAAGDVPRPPHWGGYRVVPDRIEFWGGRPSRLHDRLVYTRSSEGGGNGG--WTMQRLQP 231
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: A0A482SL99_9ARCH (Pyridoxamine 5'-phosphate oxidase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL99_9ARCH)

HSP 1 Score: 240 bits (612), Expect = 5.180e-72
Identity = 120/221 (54.30%), Postives = 149/221 (67.42%), Query Frame = 3 
Query:  351 LANLRENYESSGIDE--TTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            LA+LR+ Y S G+ E    +   P  L + W+ +A   + VIEPNAMCL+T  +  KPSARFVL+KGFDERG  WYTNY SRK QEL   PHAA+TFWWG L RSVR EG+V  +S  ESDEYF+ RP GS+IGAW S+QS  I +R  +E +   + E F  EG  +PRPPHWGGFRL P R+EFW+G+ SRLHDR V+  +  +      AW + RLQP
Sbjct:   43 LADLRKEYSSRGLVEENVVISNGPFELFEAWLNDAVAAR-VIEPNAMCLSTCVD-NKPSARFVLLKGFDERGFVWYTNYESRKGQELVDNPHAALTFWWGELERSVRIEGKVERVSSAESDEYFNSRPRGSQIGAWTSNQSRAIENRAILEEQERIVAERFGKEGP-VPRPPHWGGFRLIPHRIEFWKGRASRLHDRLVFERSCLSS-----AWALERLQP 255
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: A0A136P593_9BACT (Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 Tax=Chlorobi bacterium OLB7 TaxID=1619898 RepID=A0A136P593_9BACT)

HSP 1 Score: 238 bits (608), Expect = 7.660e-72
Identity = 113/218 (51.83%), Postives = 141/218 (64.68%), Query Frame = 3 
Query:  345 PDLANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTR 998
            P LA++R+ Y ++G+ E  L   P      W ++A N   V EP  M LATV  AG+PSAR VL+KGFDE G  ++TNY  RK ++L A PHA+++FWW  L R VR EG V  +S  ESDEYF+ RP GSKIGAW S+QS  I  R+E+E +  EI   FA  G  IPRPP WGG+RLRPT +EFW+G+PSRLHDR  Y        EEG AW + R
Sbjct:    2 PSLADIRQEYTAAGLAEADLDPNPFAQFAHWFDQAMNAS-VPEPTGMTLATVNNAGQPSARVVLLKGFDEHGFLFFTNYEGRKGEDLAAHPHASLSFWWSQLQRQVRIEGRVEKVSAAESDEYFASRPLGSKIGAWASEQSRVIAGREELEERVREIEARFA--GGEIPRPPFWGGYRLRPTMIEFWQGRPSRLHDRLRYRWQ-----EEGGAWVIER 211
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: A0A0G4EI35_VITBC (Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EI35_VITBC)

HSP 1 Score: 239 bits (610), Expect = 1.660e-71
Identity = 111/219 (50.68%), Postives = 147/219 (67.12%), Query Frame = 3 
Query:  351 LANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            ++ LR+ Y   G+DE ++P  P  L  +W E+A      +EPNAMCL+T  + G+PSARFVL+KG+DERG  +YTNY SRK +EL   P A++TFWW AL RS+R EG V  +  EESD YF+ RP  S++GA  SDQS PI SR+ +E K  E+   +    + +PRP HWGGFRL P+R+EFW+G+ SRLHDR VY+   E  GE G  W + R+QP
Sbjct:   56 ISALRKEYSMKGLDEASMPADPLTLFGEWFEDAKTVS--VEPNAMCLSTASKEGRPSARFVLLKGYDERGFVFYTNYESRKGKELTENPFASLTFWWEALERSIRIEGRVQQVPPEESDAYFTSRPKASRLGAIASDQSRPIASREALEAKWSELEGRYEGTAE-VPRPLHWGGFRLVPSRIEFWKGRESRLHDRLVYTR-GEGEGEGGGEWRIERMQP 270
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: A0A4D9D582_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D582_9STRA)

HSP 1 Score: 236 bits (603), Expect = 8.100e-71
Identity = 119/246 (48.37%), Postives = 154/246 (62.60%), Query Frame = 3 
Query:  351 LANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFP----------------------HAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDN-----IPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            +A+LR+ Y +SG+ E  +P++P  + ++W++EA   Q V+EPNAMCL+TV   GKPS RFVL+KG D+RG TW+TNY SRK  +L   P                       AA+TFWWG L RSVR EG V  +SEE S  YF  RP GS+IGAW S+QS PI SR ++E +   ++  F  E  N     IP+P  WGGFRL P RVEFW+G+ SRLHDR VY+L  +   + G AW +TRLQP
Sbjct:    4 VADLRKEYSASGLVEENMPSEPLSVFRQWLDEAVAAQ-VLEPNAMCLSTVSSDGKPSGRFVLLKGLDDRGFTWFTNYQSRKGHDLAGAPVAPALTSSAXXXXXXXXXXXXXFAALTFWWGDLERSVRVEGWVERLSEEASQAYFDSRPRGSRIGAWASEQSRPIGSRYDLESQYASVSARFGGEEGNDSAHPIPKPAQWGGFRLVPERVEFWKGRQSRLHDRLVYTLEED---KVGRAWRLTRLQP 245
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: UPI0003FCEA0A (pyridoxamine 5'-phosphate oxidase n=1 Tax=Flectobacillus major TaxID=103 RepID=UPI0003FCEA0A)

HSP 1 Score: 234 bits (598), Expect = 1.680e-70
Identity = 114/220 (51.82%), Postives = 146/220 (66.36%), Query Frame = 3 
Query:  348 DLANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            DLA LRENY    +D + +   P    QKW E+A + Q ++EPNAM ++TV   GKPS+R VL+K  D  G T+YTNY SRK  EL   PHA ITF+WG L R VR EG +  +SE++SDEYFS RP GS+IGAWVS+QS  I +R+ +E + + I   F  EG ++PRPPHWGG+RL P  +EFW+G+PSRLHDR  Y+LT      E   W + RL P
Sbjct:    5 DLAALRENYTKGSLDVSDVLPSPIQEFQKWFEQAVDSQ-ILEPNAMHVSTVSNEGKPSSRIVLLKSLDSTGFTFYTNYLSRKGTELAENPHACITFFWGELERQVRIEGLIEKVSEQDSDEYFSVRPRGSQIGAWVSNQSMVIDNREVLEEREKSIVAKF--EGKDVPRPPHWGGYRLVPHYIEFWQGRPSRLHDRIAYTLT------ENNQWKIERLSP 215
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: W7TXG4_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXG4_9STRA)

HSP 1 Score: 235 bits (599), Expect = 4.610e-69
Identity = 117/246 (47.56%), Postives = 153/246 (62.20%), Query Frame = 3 
Query:  351 LANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFP----------------------HAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDN-----IPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            +A+LR+ Y +SG+ E  +P++P  + ++W++EA   Q V+EPNAMCL+TV   GKPS RFVL+KG D+RG TW+TNY SRK  +L   P                       AA+TFWWG L RSVR EG V  +SEE S  YF  RP GS+IGAW S+QS PI SR ++E +   ++  F  E  N     IP+P  WGGFRL P RVEFW+G+ SRLHDR +Y+L  +   + G  W +TRLQP
Sbjct:   90 VADLRKEYSASGLVEENMPSEPLSVFRQWLDEAVAAQ-VLEPNAMCLSTVSSDGKPSGRFVLLKGLDDRGFTWFTNYQSRKGHDLAGAPVAPAVTSSAAXXXXXXXXXXXXFAALTFWWGDLERSVRVEGWVERLSEEASQAYFDSRPRGSRIGAWASEQSRPIGSRSDLESQYASVSARFGGEEGNDSAHPIPKPAQWGGFRLVPERVEFWKGRQSRLHDRLMYTLEED---KAGRIWKLTRLQP 331
[Close]
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Match: A0A259QQQ5_9BURK (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=5 Tax=root TaxID=1 RepID=A0A259QQQ5_9BURK)

HSP 1 Score: 231 bits (588), Expect = 4.620e-69
Identity = 116/219 (52.97%), Postives = 141/219 (64.38%), Query Frame = 3 
Query:  351 LANLRENYESSGIDETTLPTQPHVLMQKWVEEACNCQEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVSDQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP 1007
            LA+LR++Y  + +DE      P  L ++W+ EA   Q V EPNAM LATVGE G+PS R VL+KGFD RG+ WYTNY+SRK +EL A PHAA+ F W  L R VR EG V  +S EESD YF+ RP  S++GAW SDQS+PI  R  + R+A E    F   G N PRPPHWGG+RL P   EFW+G+PSRLHDR  Y L      + G  W   RL P
Sbjct:    4 LADLRKDYTRAELDEAHADADPLKLFERWLHEAVQAQ-VPEPNAMTLATVGEDGRPSTRVVLVKGFDARGIVWYTNYHSRKGRELAARPHAALQFHWVELERVVRIEGRVEPVSAEESDAYFASRPLASRLGAWASDQSQPIEGRGVLVRRAAEFGLKF---GLNPPRPPHWGGYRLVPDAWEFWQGRPSRLHDRLAYRL------QPGGVWMRQRLAP 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.68.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQK8_ECTSI2.100e-14176.81Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus... [more]
A0A7S2XW57_9STRA3.860e-7654.75Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa... [more]
A0A836CLR6_9STRA2.540e-7552.70Pyridoxal 5'-phosphate synthase n=1 Tax=Tribonema ... [more]
A0A482SL99_9ARCH5.180e-7254.30Pyridoxamine 5'-phosphate oxidase n=1 Tax=archaeon... [more]
A0A136P593_9BACT7.660e-7251.83Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 T... [more]
A0A0G4EI35_VITBC1.660e-7150.68Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella b... [more]
A0A4D9D582_9STRA8.100e-7148.37Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochlor... [more]
UPI0003FCEA0A1.680e-7051.82pyridoxamine 5'-phosphate oxidase n=1 Tax=Flectoba... [more]
W7TXG4_9STRA4.610e-6947.56Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochlor... [more]
A0A259QQQ5_9BURK4.620e-6952.97Pyridoxine/pyridoxamine 5'-phosphate oxidase n=5 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:306187..313449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQK8
Preferred namePDX3
PFAMsPNP_phzG_C,Putative_PNPOx
Model size1695
Max annot lvl2759|Eukaryota
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009987,GO:0010181,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032553,GO:0034641,GO:0036094,GO:0042364,GO:0042816,GO:0042818,GO:0042819,GO:0042822,GO:0042823,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Exons8
Evalue9.95e-147
EggNOG OGsCOG0259@1|root,KOG2586@2759|Eukaryota
Ec32 ortholog descriptionPyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
Ec32 orthologEc-10_006030.1
EC1.4.3.5
Descriptionpyridoxamine-phosphate oxidase activity
Cds size852
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.68.2prot_P-littoralis_Contig65.68.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 306736..312764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791355.8198416-UTR-P-littoralis_Contig65:306186..3062341680791355.8198416-UTR-P-littoralis_Contig65:306186..306234Pylaiella littoralis U1_48UTRP-littoralis_Contig65 306187..306234 +
1680791355.8346183-UTR-P-littoralis_Contig65:306625..3067351680791355.8346183-UTR-P-littoralis_Contig65:306625..306735Pylaiella littoralis U1_48UTRP-littoralis_Contig65 306626..306735 +
1680791355.9351053-UTR-P-littoralis_Contig65:312764..3134491680791355.9351053-UTR-P-littoralis_Contig65:312764..313449Pylaiella littoralis U1_48UTRP-littoralis_Contig65 312765..313449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791355.8441586-CDS-P-littoralis_Contig65:306735..3068691680791355.8441586-CDS-P-littoralis_Contig65:306735..306869Pylaiella littoralis U1_48CDSP-littoralis_Contig65 306736..306869 +
1680791355.8557112-CDS-P-littoralis_Contig65:307133..3073051680791355.8557112-CDS-P-littoralis_Contig65:307133..307305Pylaiella littoralis U1_48CDSP-littoralis_Contig65 307134..307305 +
1680791355.871597-CDS-P-littoralis_Contig65:310094..3102161680791355.871597-CDS-P-littoralis_Contig65:310094..310216Pylaiella littoralis U1_48CDSP-littoralis_Contig65 310095..310216 +
1680791355.88555-CDS-P-littoralis_Contig65:310725..3108791680791355.88555-CDS-P-littoralis_Contig65:310725..310879Pylaiella littoralis U1_48CDSP-littoralis_Contig65 310726..310879 +
1680791355.8991778-CDS-P-littoralis_Contig65:311582..3116601680791355.8991778-CDS-P-littoralis_Contig65:311582..311660Pylaiella littoralis U1_48CDSP-littoralis_Contig65 311583..311660 +
1680791355.9099348-CDS-P-littoralis_Contig65:312184..3122311680791355.9099348-CDS-P-littoralis_Contig65:312184..312231Pylaiella littoralis U1_48CDSP-littoralis_Contig65 312185..312231 +
1680791355.9239755-CDS-P-littoralis_Contig65:312619..3127641680791355.9239755-CDS-P-littoralis_Contig65:312619..312764Pylaiella littoralis U1_48CDSP-littoralis_Contig65 312620..312764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.68.2

>prot_P-littoralis_Contig65.68.2 ID=prot_P-littoralis_Contig65.68.2|Name=mRNA_P-littoralis_Contig65.68.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=284bp
MSSTNLPARTWFLVGVAMLCSLKIGAMAFRSLGPRAGRKRGNILSSTAGA
SGSAKSSPTAGPPDLANLRENYESSGIDETTLPTQPHVLMQKWVEEACNC
QEVIEPNAMCLATVGEAGKPSARFVLMKGFDERGVTWYTNYNSRKSQELK
AFPHAAITFWWGALHRSVRFEGEVAMISEEESDEYFSCRPTGSKIGAWVS
DQSEPILSRDEMERKAEEITEAFASEGDNIPRPPHWGGFRLRPTRVEFWE
GQPSRLHDRFVYSLTSEAGGEEGEAWTVTRLQP*
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mRNA from alignment at P-littoralis_Contig65:306187..313449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.68.2 ID=mRNA_P-littoralis_Contig65.68.2|Name=mRNA_P-littoralis_Contig65.68.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7263bp|location=Sequence derived from alignment at P-littoralis_Contig65:306187..313449+ (Pylaiella littoralis U1_48)
CCACGCAGGACGACATATGGGCAAAGCGCTGAGGCTTGGGTGGGCCGGGT
GGGTGGGCAAGCAACGAGTTTTTGGTTTTTTATGTCGTACTGCCTGTACA
GCGAATCGGGGATTTCCGCCCGCAAATCGTGAAATCGTATAACAATTTAT
AATTATGATGCGAAGCGGACAATTTTGGCTGGCGCAATGATGCATCAGTA
GTTCGCTACTGAAAACACACCCACCATTTCTGTCGTGGATGAACGCATGG
TGGAAGGAGCCATCGCTCGCGAACATTCGACTGCGTCCTCTCCTGTCCTA
TCTCTTGATCTCCTCCGTCTGTCAAGAGGCCGGTATTGTACAGGACGGAG
ATGCCTTTTTGTCTTTTTCTCTTTTGGCTCTGAGGGGGCTCGCTGGATGA
ACACAAATACGGTATGCCGGACATTCTCTTTCCAAGCAGATTCTGAGCCC
CGGAGATGTGGTCTGTGACGGAGACGCAACAGCCGGCAGACAGATCGAGT
CACAACAAGGGCACCCAGAGTGAAAACAGCCCAGACTTGTGCCCGCTCGA
TGTCGTCGACGAACCTACCGGCCCGGACCTGGTTCTTGGTGGGCGTAGCG
ATGCTTTGCTCGCTTAAGATTGGCGCGATGGCGTTTCGATCCCTGGGTCC
TCGTGCAGGCAGGAAGCGTGGCAACATACTGAGGTAAATACCACACACCA
GTCAGTACTTGTTGCACAACAATGAGCTGGTCAACTGCTACATACCAGGT
ACAGCAGCGTAACTCGCCTCATCACACATAGGGCTTCCAGGTCATTGCAT
GTGACAATAACCAATTACCGTCAGTAACTGATAGGCAAGACGCCTGTGGC
TTCGTCAGCACAGTACTTGGATCTTACGGCACAAGTACATTTCTGTATCC
AAGTGCTGTGATGTGAACACTGCTGTCCATATCCCACCCCATAACAGCAG
CACTGCTGGCGCTTCTGGATCGGCGAAATCTTCTCCAACAGCTGGTCCAC
CGGATCTGGCGAACCTCCGGGAGAACTACGAGTCATCAGGGATCGACGAG
ACAACGTTGCCTACACAACCGCACGTTCTCATGCAGAAATGGGTGGAAGA
AGCATGCAACTGCCAAGAGGTATGTATGTTTTTCTTGATTCTCACATAGC
CCACTACCTCCGCAGTCTACTTGTAGCCCGTGGTCACAAACCTATAGGTT
TCGTGATAATGCTCTCGTGTTCGTTTTGTTCGCCACCACGTGTCCACGGT
CATCTCAGTTCCCGAGTTCATGAGTCATCGCGAGTAGCGAGCTCGCTTCA
CACGGAGTTGCAGTCGCTGTACTTGTATGTACCTGTACTCGTCACGATTC
ACGCGCACGGATGTTTGCCGCAGCCCGCAGCTTTTCCACGGGTGCTACTA
GTACTGCTGCATTGTTCTCTTCGCCCACATGGAGCAAAAATAAACGGTAT
GATCTCATCACATGCAAGAGGGACACAGCATCCGCTTCCCTTTCGTAGAA
TCCCACTCAGTATGATATCATACAACCAGGCAGACTGCACCAGTACAACG
AAACCCGTCTCTCTCTTGCTCTTGATGTCTGCGGTCCGATCATATGGTGT
TTGGTGACATTTTTTATTTCAAAGTTTGATCTGTTTGTAAGAAGGGAAAA
AAAGCCATTCAACGCTTTCGCCTCTCTCTAGACGAGGATCTAGAATAGAT
TAGCAACGAACACAGAGATAGAACATCTACTTGCATTTCTTGAACTCATC
AGACATCATTCTTGAGTACCGGATGCACGAACATCCATTTTCTAAATCGG
CGCTTCGGATCGAAAGAGCACACGAACACCACGCACCAGACTTACCAACA
AAACGAGAGACAGAGGGTAGGGGCCGGAAGAAACGCGTGAGAGGCAGCGC
TTGAGCGTTCTCGTGACGCGTATGTCTTTGTTTCGAACTCGTCTTTATTT
TCGATCAGTCTTAGTCCCACATGATAAGTTCCCCAAACTAGATCCGAGAC
AAAACAGCGAGCACAAGATAGCGCTGAAATAGGACTTGTGCGGCATATGT
TCCTGATCGCAAGCGTGAAATTCGCCAGAGACACCATGTGGCAGTGACGT
GCGTGTTGGCACGCTCAGATCTGCTGCTGGGGCCATCATGCCGATGGTTG
AAGGTATGATTTGTGGTACAGCAGTCCATAACCGTCACGGCCCATGACAG
CTGCTGCAGCAGCGCAATATGTTTGGTTTCGGGCTGAGGCTGAATCTTAT
GGCACACCGATTTTGAGACACACGTTTCCAAATCTTGTTGGGCAATAATC
GGTGGGCCCACAGGCTGACTGCGTGTCTTATGGGACACACCGATTTTGCA
TTTGTTTCAAAATCTAAATCATGGGTGGTTTTGCAGTGTCCTCCAGAGGC
GTGGTGCAATAGAAACATGGATTGCGTAGTACGTGCAGGAACCGCTTGTT
GACGCACCACTGGCACTGCATGTGCCACCATCTATCTGACAGCAAAACGA
AACCAACAAACTGCTGTACACACAGAGAGACTGGCTGTGGTTCAGATTGA
AAGTCCAAAAATTGTTGAACACACCACACACATACGTACATCCATCCTCA
TCATAGACAGACAACATTGTACGAAACACCGAACGAAGTACTTTGGTGCA
CAGCAGCAGCACAGCAGCAGCACAGCAGCAGCACAGCAGCAGCACAGCAG
CAGCACAGCAGCAGCACAGCAGCAGCACAGCAGCAGCAGCAGCAGCAGTG
TGGTGGTAGTCGTGCGGTAGTTGCCAAAAGAGCAATGGCCTACTCATGAT
ATCATCATGCCGCATTTGCTTTCCCCACAACATGATCGAGCCAAGCTCCA
GCACGGGCCGGGTGTGGGGTTCGGTTGCGTTGTGGTGCTGGATGTGTGTG
CGCTCGACACGATCATCACCACAAACGACAACAACAGCAGCAACAATACC
AATACTACCTTGTGGTACAGCAGTAGTGTAGCAGTATGATAACAGCTCGG
GGATGCGGTGCGACCCCATTATGCTGGTCGAATCGACAAAATTCAAATTT
CGTGGGCCAGATCTCGTGCGTGGAGACAAACGAGATTTGGGCCCAAAACC
GGTGGGACTGTCTTCCCGATTATCGTTCAATATTTCTCAAATTTCGATTT
GTCAAGAATCTGTGTCTACAAGGTGGACCAATTTTGTTTTCTCAACGAGA
TGGAAACCTGTCTCAAAACCGGTGTGCCATAAGATTCAGCCTGAGATGCG
GACGATTTTCGGACTGAGTGAACCAAATTTTCGACCTCCGACATCTCGCC
CCCATCCTCAAATCTGGGCGTGACAACACGCACTTCACCACTGAATGGTG
CCTTCTGCTTGTTTCAGCCGGGCGTGTAGGAATAGGTGCACGGGAAGGTC
GATTTCCAAAAACTTCTTTGAAAATGACCGGAAGAACCCCCCTGGTGTGG
GACCGATCCCCCAATACTCAAGGTACGGTTGATGTGTGTGCTGTACCGCT
GCAGGCACTTCAGATATTTTTTGGTGAAAGTTGATTGAACATTACGGCTG
ACAGCAGCAGGAAGTGTCAATGTATCATGAAGCTGAATCTATGCTGGGTA
CCCCAGTGAAAAGTGATGCGTGCTTATCCAGATTCATTTTTTTTTTTTTA
TTTTCGCTCACACGGCAATGTCTCACCACCCCAGCATCTCCCACCAACGG
ATCAACGAACCGCTGTGTCAGCGAAACAACCCTCGACTCAGCCACACGCT
TCAAATCCACCTCCTGAGAGACGTGGAAGATTACATCGCATCTTCGCTAA
AAAAAAATCTCTCTGCTCTCTCTTGGCTGATCATTAAAGCAGTACACCCT
TTCACCTAATGCTTCAGCTCGAATGAACTCCTCGCTTCCTTGCCTCGTGT
CACCCCAGGTGATTGAGCCGAACGCCATGTGTCTGGCCACGGTAGGGGAG
GCCGGTAAGCCATCCGCGAGGTTCGTTCTGATGAAGGGTTTCGACGAGAG
AGGCGTAACGTGGTACACCAACTACAACAGGTTCGTTTCAATTGTCGTTC
ATGGGTGGGGGCACAGCTGGTCGGCACTGTATATCTATCAATGTGTGTTT
TTCTTCTTTACTGGTGTTCTTTTCTCCTGTCGTGTTTGATCCTCCGGGTA
TCGTTACAGCAGGGTCTTGCCTCCGTACAGCACTTGAATTTTTTTGACTA
CCAATACATTGAAGTATGGTATGGCCTGCTCAACGATTTGGTTTTTACTA
TTATCGCGGGTTATTCGTTGTTCAAATATCCAAGTGCCAACATTATCGAC
TACCAATACATTGAAGTATGGTCTGCTGAACGAGACGATTTTCGCTATCA
TCGCGGGTTGCTCGTTGTGCAAATATCCAAGCGCCAACATCCCGTTCGTC
TTTCATCGTTCATCTCGTTGTTTCGGTGCTGCGTGCCTCTCGGAACCTTC
TTCGTTGCTGTGTGTGGCGTGGTGTGGCTTCGGTGCGGGCTGGCTTGGGG
CTGGCATGGATTGGCCTGATCGGCTTGAACGGCTTGCAGCCGCAAATCGC
AGGAGCTGAAAGCGTTTCCGCACGCGGCCATCACCTTCTGGTGGGGTGCT
CTCCACCGATCGGTTCGGTTTGAGGGGGAGGTGGCCATGATCAGCGAGGA
GGAGAGCGACGAGTACTTCAGCTGCCGACCAACTGGAAGCAAGGTGCGCG
GGCGTTTGTTTTTTTGTTGGTTTGCCTGCGCGCGCATCCAGCAGTGGTCG
GCGGAAAAAACTCCGTGAGTGCCCGTAACACCCTGACGAATCACGCTTCT
TAACCTGAAAAACTTGGTCCAGGTATTTCACGTGTGGGGGGCGGAATTAC
CTGTAAATTGATTGGGATGTTGGCGTAACATTTCCATTCACCTTGAAATT
TTAGGCATTTTTCACGCCAACATTGCACGCCATGATCAGCAACGGGGTGT
CCACTCTTCCACGCGTTCGTGCGTGAGAGCGCTAGGTAAAAAAAACGTAT
TTTACGAGAGAAGAATCACGAAGATTTTTTCTACGCAACGAGGGAGCTTG
AATCCTGAAACCTTGGTCCCTCGCCCAAAACTTTCGTACACCTCTGTGTG
TATATTTCTTCCTGTTGCACCGCGACCATCAAGATCGGTGCCTGGATGAT
GTCGGGCCACGTTTATAACAGCAAACCCTTCATCCGTTACAGGCATCCGT
AGAACCCTAGACCAGCGACATCCGTGCCCTCCACGAGTGCACCGCCGTGG
TACACGTTTTGCGTACGGGTGTACGTTCTACGCACCAGTTTGTCGAATTT
CGACGTCACCGAAAGAGTTTGTATCCCTCCTGCACCAGCCCGACGCTAGA
TTGTCCTTCGCTCCGTCTCGATATCGGCCTTCCGTTTTATGCTTAGATCG
GGGCCTGGGTGTCGGATCAAAGCGAGCCCATTTTATCGCGAGATGAAATG
GAACGAAAGGCGGAGGAAATCACGGTGAGACGGTCACCTTGGCCCAGTCC
GGTCCACGAGGTATCCATTCGTAACGTTCGTGCCGCAGGTTTCAGAATTT
TGCTGCACGGAACAGCACCGGGTACCTATTTTGTTGTGTGTGTCGCACGT
GTGTGAAGAGCACGGGGAACCCGTTGTGTGTTCAAAAGAGTGTCAGGGCA
TACCCGGGCGGGTTGTCCTCCTCCCCTGTCATGTTTACATTCAGGACGGT
GACGTTGGCTTTTCTTCGTGGTGTACGTCGGTGCAGGTCGGTGTGTCGTC
ACCGACGGAGTCCGACGGAGTCGAACACAAAGCAGCTTGTACGTCACATT
AATGGTGATGAACGTGTCGCCGGTCGGCCGCAACGTTTGCCGCGGCAATC
ATTGCCCAACGCCGTGTAGCGCTGAAGAGGTGTTGCGTGACGCGGCCACC
AAGCCACGACGGCCCGAGCCCTTATTTCGATGCGAGCGGAACCTCTTACA
GCCCGCAAAATTGGAAATTTGTCCGTCGGTAACCGACTTTCTGAGCAGGA
AGCCTTTGCCTCGGAGGGAGACAACATACCTCGCCCCCCGCATTGGTGAG
TGGGCGCTTGACTTGGGGACGTTTCGAGTTTTGCACGGATGCGCGCAAGC
ACGCACGCAAGCAAGCAGTCACGTGTTCTTTTTCGTCGAACGAGTGCCGA
GTCTCGTTCGAGCCATCGGCTAAGCTCTCCCCTTTGGCTTTGTCGAGGTT
TTATACTTGCTGGCACAGGACAAGGACGCCGTGGTAACTTCATAGCCCGC
TTTGCTTGTGTGTGTATGTGCTCCTGGCGGTAGTTTCGCCAGCTTGATCG
ATGATATTTCCTGTTTGGGGTTGCGTCAAGTGCGGTGTAACGATAGTAGT
AACGTTGTGCAGGCGAGTGCAAAATACACGCGCCTGTCAATAACCACGGC
GCGTGGCTCTCTCATGTCGATGGGTCTTGGCAGGGGCGGCTTCCGGCTCA
GGCCCACGCGCGTGGAGTTCTGGGAGGGACAGCCCTCCCGCTTGCACGAC
CGATTCGTCTACTCCCTTACGTCGGAAGCGGGAGGAGAGGAGGGCGAGGC
GTGGACGGTCACACGGCTGCAGCCATAAAATAGTCTGCCCGCCTGCCTGT
CTCCTCTGCCTGAAACTTGTAGTAGACAACGGCTCGGTGGGGCAGCCACC
GATGACGTCGCTGGCGCTTAGTAGTGCTACCTTTACCCAAGAAGCTTGTT
TCAGGGCAGTCGAGATTAGAAACAGAAAGAAGCACGCGCTTTTTGCCGGC
AATCGAAAGTTGGATGTGAGTGCTAATTGTACACCCACATTAACCTTTTC
ATGTTTGTGGCTCTACGCGAACAAGCTCATGGACCTCTGGTATCGGCAGT
GGGTGCCATCAAACCCAAGCAAGGACGGCCAGACTGGACTGGCCGCACAC
CATCGGGAGATAATGCGTGGTGTGGAAGCGCGTTTCTGCTTGCCTTCGCA
GCACGTGGGCCTCCACACAATCAACTTTGGTGTTGGAGGGGCCGAAAGGC
GCGACACTAAACCGGTGTCTGCGAGACAAACAGATGTTGTGTTCAGTGAG
AAGAAGCGTCTGTTGAAAAGGAGTGCAGCTGCTGAAATCAAAACAGCGCG
CACGCTATGATACAAGTCTCAGAATGTTCCAGTATGTTTCCTCGAAAACA
CAATTTACTCGGGTCAGGCGCGGACTATTCGAAGATTCTGGCGTTCACTC
CGATTCTTCTCTACTCCCATGTTCGACGGGTGCGGTAGAGCCCAAACCAC
CGCAAACGGACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:306187..313449+

>mRNA_P-littoralis_Contig65.68.2 ID=mRNA_P-littoralis_Contig65.68.2|Name=mRNA_P-littoralis_Contig65.68.2|organism=Pylaiella littoralis U1_48|type=CDS|length=852bp|location=Sequence derived from alignment at P-littoralis_Contig65:306187..313449+ (Pylaiella littoralis U1_48)
ATGTCGTCGACGAACCTACCGGCCCGGACCTGGTTCTTGGTGGGCGTAGC
GATGCTTTGCTCGCTTAAGATTGGCGCGATGGCGTTTCGATCCCTGGGTC
CTCGTGCAGGCAGGAAGCGTGGCAACATACTGAGCAGCACTGCTGGCGCT
TCTGGATCGGCGAAATCTTCTCCAACAGCTGGTCCACCGGATCTGGCGAA
CCTCCGGGAGAACTACGAGTCATCAGGGATCGACGAGACAACGTTGCCTA
CACAACCGCACGTTCTCATGCAGAAATGGGTGGAAGAAGCATGCAACTGC
CAAGAGGTGATTGAGCCGAACGCCATGTGTCTGGCCACGGTAGGGGAGGC
CGGTAAGCCATCCGCGAGGTTCGTTCTGATGAAGGGTTTCGACGAGAGAG
GCGTAACGTGGTACACCAACTACAACAGCCGCAAATCGCAGGAGCTGAAA
GCGTTTCCGCACGCGGCCATCACCTTCTGGTGGGGTGCTCTCCACCGATC
GGTTCGGTTTGAGGGGGAGGTGGCCATGATCAGCGAGGAGGAGAGCGACG
AGTACTTCAGCTGCCGACCAACTGGAAGCAAGATCGGGGCCTGGGTGTCG
GATCAAAGCGAGCCCATTTTATCGCGAGATGAAATGGAACGAAAGGCGGA
GGAAATCACGGAAGCCTTTGCCTCGGAGGGAGACAACATACCTCGCCCCC
CGCATTGGGGCGGCTTCCGGCTCAGGCCCACGCGCGTGGAGTTCTGGGAG
GGACAGCCCTCCCGCTTGCACGACCGATTCGTCTACTCCCTTACGTCGGA
AGCGGGAGGAGAGGAGGGCGAGGCGTGGACGGTCACACGGCTGCAGCCAT
AA
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