mRNA_P-littoralis_Contig65.65.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig65.65.1 vs. uniprot
Match: D8LQK9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQK9_ECTSI) HSP 1 Score: 1323 bits (3425), Expect = 0.000e+0 Identity = 855/1431 (59.75%), Postives = 954/1431 (66.67%), Query Frame = 1
Query: 88 MAPSTMRSSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAFTEGKADPTEIAEAFSRARGIEVITRVVSGQPLAKPPVVSLCCQVGRQVLDKFGPGSSQSQTGRLVEAVVGRLALGISGDDAQAVECQVESARLMSSVAGQAAALLIDGGALGAVEGMLERLGGKHTSIFRPCCETLEQVSRTKEGRAAFEERGTGGVLLATIRDFPEALEEGSDAALASALKVVERIFTGKSPEACALSLRAKAEEESSDDPHIPTFSDYASCVETLLAVAEATPEAPGAAAATCLWWLSGASTRTLDRALSAILAXXXXXXXXXXXXGTDXXXXXXXXXXXXXXXXXXXQAAVRLSAEWMDVWSWFLRGNGXXXXXXXXXXXXAEEGGVVSPTPRPVEGARFLAALCLCKPGIQCLEGAVKRESPRRVGEALVTLCGSTDPSLAGACLRIIERLAKGNAGKQVFVDAGALVAAVEAGNRFEVEAGAETVGDAEARTIAASLGAVAILAEAGGRDARALVDEAFGLAVRCLGRVGEFSGRPAAAAAKSALDVITVRLTRSDRSHAXXXXXXXXXXXXXXXDSSFSSTPAAENNGDGGGEVDE--STASDDEDEGDEEGDVDAPMEALKDAGAILAVMKAHSADARVQQAGWRSLMAMDTGRGDVEKFWTGAGD----RRQMLKDCLERHGGDTLVAGQVADILEGLVLHGDSEDEDGTSLTASVSDAHGEESPLLVSAEEPEGGGDDTDSNTPMTPGVGSERNGEGEGGLPQHDSGRLEGGDGADEQSPEGNATSALPQETQSLTRGGED---GGEXXXXXXVGTSEGDEGLTVAIVGEGTP-KEVESGGXXXXXXXXPTGDAVGEGDGDLAPEDVLLELSLAGTRALEGGLSSSTATSSNDGGANSDADVGEVSEAGAGSPNSTRRPTVARSLFGDKKGVISSGRGGGQGGEEXXXXGQLDGS--PAEVVLSKAELELQESWKKLETLHSDVLGRSHILGGEGAQMVAAMPEPCSLQERVGSLLGEYESGGGARDAFAAASLALVAALAAATGALATSQKEVQRYLDMSRDIRATSTWNDLSEAMQWTMASLKGTVILFTPQSHNGMTKAVGLCKNMDSASKLFKATALQVKIIVVELAGEHEPNTVWRVDPVVFESLPENRKVMMLRHLRSLVIAYDHLSDEMRRDLTTALEIIKNREVLNMMGKFCIQSEVAEERRREAKLASAEERLKVGTRRPS------------------------ATRQGIPVVSGRRSPPIGTRDPSXXXXGSPNSSPPPPSEQHA-------VTPSRSSGAADAATPSSTGSNKSXXXXXXXKGNTSSGSRRVPLCTPRALRSTDSSSGNKNGTPGSGXXXXXXXXRTSRGVASHSRRRDTVA---------------RAXXXXXAKGGGRSKSPVAAR 4206
MAP TM+SSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAF+ GK DPTEIA+AFSRARG+EVITRV+SG+P+AKP V+SLCC+ V+DKFG G S SQ G LVEA+VGRL G+SGDDAQ VECQVE ARLMSS+AGQAA+LLIDGGALGA+E MLE+LGG H+SI RPCCE LE+VSRT+EGRA FEERGTGGVLLATIRDFPEALEEGSD ALASALKVVERIFTGKSPEACALSLRAK+EEES DDPH PTFSDY +CVET+L V EATPEAPGAAAATCLWWLSGAS++ DRALSAILA GT+ +AA +L DVWSWF RG+G EEG V P RPVEGARFLAALCLC+PG++CLE AV+RESPRRV EALVTLC S DP LA AC RIIERLAKG G QVFVDAGAL AA AG FEVE AETV DAEA IAA+LGAVA LA+AGG+DAR +VD+AF L+VRCL RVGE+SGRPAAAAAKSALDVITVRLTR DR ++ A N +GGG+ D+ S A D D DVD PME LKDAGAILAVMKAHS DARVQQ+GWRSL+AMDTGRGDVEKFWTG GD RRQML+DCLERHGGD+LVAGQVADILEGLVL GDS D DG+SLTAS+SDA GEESP L S E GGD+ D+ Q ++T A Q+ GED G G D+G V E T E G P GDA G+ + L PEDVL+E+ L GT+ LEGG SS ++ SS V V+E ST RP VARSLFG G E + D S + VV SK EL+L+ SW KLETLHSD++GRS ILGGE A MVAAM EP L+ERV +LL E ESG +RDAFAAASLALV AL AATGAL SQKEVQRYL MSRD+R TSTW D+SEAMQWTM SLKGTVILFTP + G+TKA+GLCKNMDSA KLFK ALQ+KIIVVELAGEHEPNTVWRV+ +F+ LPENRKVM LRHLRSLV+AYDHLSDEMRRDLTTALEIIKNREVLNMMGK+CIQ+E AEE+R EAKLA+A+ERLKVG RRPS TRQ I GRRSPP+G R + S P PPS TP RS+GAA++ P S GSN SGSR+ PL TPR+ RST + G G GSG RGVASHSRRR++ A R+ GGRSKSPV AR
Sbjct: 1 MAP-TMQSSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAFSAGKTDPTEIAQAFSRARGLEVITRVISGEPMAKPSVLSLCCRTAVWVVDKFGSGVSHSQGGGLVEALVGRLDRGVSGDDAQTVECQVECARLMSSLAGQAASLLIDGGALGAIECMLEQLGGNHSSIMRPCCEALERVSRTEEGRATFEERGTGGVLLATIRDFPEALEEGSDVALASALKVVERIFTGKSPEACALSLRAKSEEESCDDPHRPTFSDYDNCVETVLTVVEATPEAPGAAAATCLWWLSGASSKAPDRALSAILAAAAVAD------GTEATNEAREAE----------KAAAQLLVS-ADVWSWFSRGDGGEGDVQ-------EEGENVPPA-RPVEGARFLAALCLCRPGLECLEAAVERESPRRVAEALVTLCESADPLLARACFRIIERLAKGGTGPQVFVDAGALAAAAVAGALFEVEEDAETVEDAEAHAIAAALGAVATLADAGGKDARPVVDDAFQLSVRCLARVGEYSGRPAAAAAKSALDVITVRLTRPDRPKGAAGVRGGGAAAGPAPEAGG----AVVENDEGGGDTDKAVSGAPGDAKVEDAAEDVDTPMEILKDAGAILAVMKAHSTDARVQQSGWRSLIAMDTGRGDVEKFWTGVGDGPQSRRQMLRDCLERHGGDSLVAGQVADILEGLVLQGDSADGDGSSLTASLSDAPGEESPRLPSDHEEAEGGDEDDAXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXQDNIKHSTDAAHQQEVEQVVNGEDEDKDGGLEVPGDKGDVPEDKGAEVEGGDEATAVAEASEGAGNADGGSDPLGDAEGKSE-TLLPEDVLIEIGLIGTKTLEGGGSSGSSDSSRTASV-----VAAVAEDAVTGEGSTTRPNVARSLFGSNGHANDKNSAAGDTVEAEKPEAKADCSLNASVVVPSKEELKLRRSWAKLETLHSDIVGRSQILGGESAPMVAAMAEPSVLKERVSALLEETESGD-SRDAFAAASLALVGALTAATGALNNSQKEVQRYLAMSRDLRVTSTWTDISEAMQWTMDSLKGTVILFTPHTAGGLTKALGLCKNMDSALKLFKEAALQIKIIVVELAGEHEPNTVWRVNQSLFKGLPENRKVMTLRHLRSLVVAYDHLSDEMRRDLTTALEIIKNREVLNMMGKYCIQAEAAEEKRWEAKLATADERLKVG-RRPSDMLGSSVRKARLRSALHQASCLGNGTRQSI--TPGRRSPPMGIR--------ASFSEPSPPSLARGGLGTPTTTTPVRSNGAAES--PGSGGSNGGNNVGGRASPPLGSGSRKAPLITPRSGRSTATPPG---GVGGSGIP---------RGVASHSRRRESFAVEAEAGSSAMEDRRSRSPMFKRRPAGGRSKSPVTAR 1365
BLAST of mRNA_P-littoralis_Contig65.65.1 vs. uniprot
Match: F0XY39_AURAN (Calponin-homology (CH) domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY39_AURAN) HSP 1 Score: 60.5 bits (145), Expect = 3.020e-5 Identity = 42/150 (28.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query: 3280 AMQWTMASLKGTVILFTPQSHNGMTKAVGLCKNMDSASKLFKATALQVKIIVVELAGEHEPN-TVWRV--DPVVFESLPENRKVMMLRHLRSLVIAYDHLSDEMRRDLTTALEIIKNREVLNMMGKFCIQSEVAEERRREAKLASAEERL 3720
A++ TM LKG + + + + KA+ + + +KLFK L+VK +VV + ++ + W F ++ + ++L HLR+L +AYD+++ + +R+LTT E++ N + L + K C+ S+ E + A E RL
Sbjct: 432 ALKTTMEYLKGHAVSLHRRESSKLLKALDRADDGVARAKLFKHAHLKVKEVVVRVTRSNQRSGRHWEPFHGDASFATVQPHELALILTHLRNLAVAYDNMTADEKRELTTVRELVVNLDWLCALAKHCVASD-------ERRYADRERRL 574 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.65.1 >prot_P-littoralis_Contig65.65.1 ID=prot_P-littoralis_Contig65.65.1|Name=mRNA_P-littoralis_Contig65.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1419bp LRPVQYRPLDRRRRSRDRTGEDAVECSRAMAPSTMRSSTTEMVERKVLEMback to top mRNA from alignment at P-littoralis_Contig65:288559..306536- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig65.65.1 ID=mRNA_P-littoralis_Contig65.65.1|Name=mRNA_P-littoralis_Contig65.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=17978bp|location=Sequence derived from alignment at P-littoralis_Contig65:288559..306536- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig65:288559..306536- >mRNA_P-littoralis_Contig65.65.1 ID=mRNA_P-littoralis_Contig65.65.1|Name=mRNA_P-littoralis_Contig65.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=4257bp|location=Sequence derived from alignment at P-littoralis_Contig65:288559..306536- (Pylaiella littoralis U1_48)back to top |