mRNA_P-littoralis_Contig65.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.64.1
Unique NamemRNA_P-littoralis_Contig65.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.64.1 vs. uniprot
Match: A0A6H5L5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C1_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.800e-46
Identity = 159/339 (46.90%), Postives = 196/339 (57.82%), Query Frame = 1 
Query:    1 EEKAYWDTGGE---VPEQQHGLPPKTTA---KTIDQGFLSKLSGIEIGNAYDNLTRNLDGQAXXXXXXXXXXXXXXX-------GYTVANASTAAAAVTRFKKQVVAAVDAVPLRPDEDRLRESGSTXXXXXXXXXXXXXXXXXGDGEENRELFEGAEEVCGDQDSG--------ATGKGEEEGDERGVIDGQGNVFAGANGSKGN-QLNGGMVEESAPVLSFGAFAAAFKKKTAGGDAISPAKAAVGDEIALQPSSSGTIEAVLPDSSSCATASGGRGXXXXXXXXXXXXX-----AAASKILPRTASLVGGKQWAVLASVYDTTASVVDETIGNLFT 936
            EE+AYWD   E     +Q+ G PP T A   +  DQG +SKLSGIEIG  YDNL+++L  + XXXXXXXXXXXXXXX       GYT+ANASTA AA++RFKKQ+VAAVD VPLRPD DRLRESG+T            XXXXX                               + G  +EE      +   G       G+KG  QLNG MV+ESAPVL  G   A FKKK A  +  +    AVG    ++  ++ +++A +P  SS   A+ G     XXXXXX         AAA KI+PR+ASLVGG+QWAVLASVYDTTASV+DET+ ++FT
Sbjct:   23 EEEAYWDMNNEREQXXQQRFGRPPSTDASPTQRTDQGLMSKLSGIEIGTVYDNLSKSLGDRXXXXXXXXXXXXXXXXXXXXXXKGYTLANASTATAAISRFKKQIVAAVDGVPLRPDADRLRESGTTTSAETMTTEIDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAAQEEALRSFSV---GCTQTAKRGNKGRGQLNGSMVDESAPVLGLGVLGAVFKKKVAEVEVAAQTAEAVG----VESRNAISLDATVPPGSSPGDAAVGAAGDAXXXXXXESQSGRDGGAAALKIIPRSASLVGGRQWAVLASVYDTTASVIDETVSDMFT 354
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5C1_9PHAE3.800e-4646.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:282551..283586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1036
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_006060.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791355.492456-UTR-P-littoralis_Contig65:282550..2826471680791355.492456-UTR-P-littoralis_Contig65:282550..282647Pylaiella littoralis U1_48UTRP-littoralis_Contig65 282551..282647 -
1680791355.5156646-UTR-P-littoralis_Contig65:283016..2835861680791355.5156646-UTR-P-littoralis_Contig65:283016..283586Pylaiella littoralis U1_48UTRP-littoralis_Contig65 283017..283586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791355.5064662-CDS-P-littoralis_Contig65:282647..2830161680791355.5064662-CDS-P-littoralis_Contig65:282647..283016Pylaiella littoralis U1_48CDSP-littoralis_Contig65 282648..283016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.64.1prot_P-littoralis_Contig65.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 282648..283016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.64.1

>prot_P-littoralis_Contig65.64.1 ID=prot_P-littoralis_Contig65.64.1|Name=mRNA_P-littoralis_Contig65.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MVEESAPVLSFGAFAAAFKKKTAGGDAISPAKAAVGDEIALQPSSSGTIE
AVLPDSSSCATASGGRGGDQQPESGGDEGGAAASKILPRTASLVGGKQWA
VLASVYDTTASVVDETIGNLFT*
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mRNA from alignment at P-littoralis_Contig65:282551..283586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.64.1 ID=mRNA_P-littoralis_Contig65.64.1|Name=mRNA_P-littoralis_Contig65.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1036bp|location=Sequence derived from alignment at P-littoralis_Contig65:282551..283586- (Pylaiella littoralis U1_48)
GAGGAGAAAGCGTACTGGGACACGGGCGGCGAGGTGCCGGAGCAGCAGCA
CGGCCTGCCTCCCAAAACAACAGCAAAAACAATTGACCAAGGATTTTTGT
CCAAGCTATCGGGCATCGAGATCGGCAACGCTTATGACAACCTGACGAGA
AACTTGGACGGTCAGGCGAAGAACCTCGGCGATCAGGCGAAAAGCTTCGG
CGAGCAGGCCAAGGGGTACACCGTGGCAAACGCGAGCACCGCCGCGGCAG
CGGTGACTCGCTTCAAGAAGCAGGTCGTCGCGGCCGTCGACGCTGTCCCG
CTGAGGCCCGACGAAGACCGTCTGCGAGAGAGCGGTTCGACAACAGCCGC
AGCAAAGAGAAAGGTAAAAAAACATTATGATGATGATGATGATGGTGATG
GTGAAGAGAATAGGGAACTCTTCGAGGGAGCGGAAGAGGTCTGCGGGGAC
CAAGATTCAGGCGCAACAGGCAAGGGCGAGGAGGAGGGAGATGAGAGGGG
AGTGATAGACGGTCAAGGCAACGTTTTCGCAGGAGCTAACGGTAGTAAGG
GGAACCAGCTCAACGGGGGCATGGTCGAGGAAAGCGCGCCGGTGCTAAGC
TTCGGCGCCTTCGCGGCTGCCTTCAAGAAAAAGACGGCCGGCGGGGATGC
CATTTCGCCGGCCAAAGCTGCAGTAGGCGACGAAATAGCTCTTCAACCTT
CATCGTCGGGCACGATAGAGGCAGTGCTACCTGACTCTTCGTCTTGTGCG
ACGGCTTCAGGAGGAAGAGGAGGGGATCAACAACCTGAGTCTGGAGGGGA
TGAGGGAGGGGCCGCAGCTTCAAAAATACTCCCCAGAACTGCCTCGCTAG
TGGGTGGGAAGCAGTGGGCGGTTCTTGCCTCGGTGTACGACACGACCGCG
TCTGTTGTAGACGAAACCATCGGCAATTTGTTCACGTAGTGAAAACGGTA
AGCCGTGATTGGGGAGAGGTTGGTGTCGTGCATGATGAAGACCCCGGAAA
GGTTAGACACCCTGGCTAGCACGATATACCGCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:282551..283586-

>mRNA_P-littoralis_Contig65.64.1 ID=mRNA_P-littoralis_Contig65.64.1|Name=mRNA_P-littoralis_Contig65.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig65:282551..283586- (Pylaiella littoralis U1_48)
ATGGTCGAGGAAAGCGCGCCGGTGCTAAGCTTCGGCGCCTTCGCGGCTGC
CTTCAAGAAAAAGACGGCCGGCGGGGATGCCATTTCGCCGGCCAAAGCTG
CAGTAGGCGACGAAATAGCTCTTCAACCTTCATCGTCGGGCACGATAGAG
GCAGTGCTACCTGACTCTTCGTCTTGTGCGACGGCTTCAGGAGGAAGAGG
AGGGGATCAACAACCTGAGTCTGGAGGGGATGAGGGAGGGGCCGCAGCTT
CAAAAATACTCCCCAGAACTGCCTCGCTAGTGGGTGGGAAGCAGTGGGCG
GTTCTTGCCTCGGTGTACGACACGACCGCGTCTGTTGTAGACGAAACCAT
CGGCAATTTGTTCACGTAG
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