mRNA_P-littoralis_Contig1168.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1168.12.1
Unique NamemRNA_P-littoralis_Contig1168.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1168.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1168contigP-littoralis_Contig1168:39256..40755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size671
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.3608289-UTR-P-littoralis_Contig1168:39255..392821680789485.3608289-UTR-P-littoralis_Contig1168:39255..39282Pylaiella littoralis U1_48UTRP-littoralis_Contig1168 39256..39282 +
1680789485.3973465-UTR-P-littoralis_Contig1168:40462..407551680789485.3973465-UTR-P-littoralis_Contig1168:40462..40755Pylaiella littoralis U1_48UTRP-littoralis_Contig1168 40463..40755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.370018-CDS-P-littoralis_Contig1168:39282..395971680789485.370018-CDS-P-littoralis_Contig1168:39282..39597Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 39283..39597 +
1680789485.386919-CDS-P-littoralis_Contig1168:40426..404621680789485.386919-CDS-P-littoralis_Contig1168:40426..40462Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 40427..40462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1168.12.1prot_P-littoralis_Contig1168.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1168 39283..40462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1168.12.1

>prot_P-littoralis_Contig1168.12.1 ID=prot_P-littoralis_Contig1168.12.1|Name=mRNA_P-littoralis_Contig1168.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MSTDGPGGPPGRLGIGESGDVCSKCGTLWRRRRERMRCDSTSRRRDDNPF
TNLKRRTITAAAAAAAPFGSQQQDHSRINSLQRGAAVSTVSTPSTAPAYS
GVVDEVVKGSQEVTTS*
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mRNA from alignment at P-littoralis_Contig1168:39256..40755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1168.12.1 ID=mRNA_P-littoralis_Contig1168.12.1|Name=mRNA_P-littoralis_Contig1168.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1500bp|location=Sequence derived from alignment at P-littoralis_Contig1168:39256..40755+ (Pylaiella littoralis U1_48)
CGCACTACAAAGCTGAAGCAGCCCGCAATGTCAACTGACGGACCAGGAGG
ACCACCAGGGCGCCTAGGCATAGGAGAGAGCGGAGATGTTTGCAGCAAAT
GTGGTACATTATGGAGAAGAAGGAGGGAAAGAATGCGGTGTGACAGTACA
TCTCGAAGACGTGACGACAATCCATTTACAAACCTTAAACGTAGGACCAT
AACAGCAGCAGCAGCAGCTGCTGCACCGTTTGGCAGCCAACAACAAGACC
ACAGCCGCATCAATTCTCTACAGCGTGGGGCGGCGGTAAGCACCGTCTCA
ACGCCAAGTACGGCCCCAGCGTATTCGGGCGTCGTCGACGAGGTGACAAC
AGGTGTGGACACATATGGTGCGTTGGGTGTTTTTTTTCAGGGGCTTCCTC
GGTAATTTCACTGGGGTAATTTATCACGGTAATTGCGCGGTATTTGGTAG
TGTACTTCGTACCTCGTACTTCGAAGTATTTGCTAACTATACCGCGATAA
ATAGGAGTTACGGTTACCATCCAAACTGTCTAACACCCAACTTGTGCGAT
ACCGTTACCACCCAAACCGTTACCGAGAACCAAATATTTTACCAATACCA
ATCAAACCGTTACCACCGTGCAAATATTGGAATTCCTGCGACTTCTCGAT
ACCGTGGTAATAATAACTAGAACTGCCAATGATAACTGTAGTCTATCGAG
GACGATGCTAGCTAGGGTGGCAGAAAACATTTAGAACGTCAGACGCAGCG
ATGTCCATCCCCTCCGATAGCTCGTCGGTTCGAGGCTCTGTGCCGTGCAC
TGCTTATTTTTGTTCCTGATATTTAATCTTTGTAATTTTTTGTTTAATTA
AAAAAAAGTACTTCGCACTTCGTAAAAAAAAAACTCCGTATTAGATCTTC
TCGGAGCAGCTGCGGGCGAATTGTGTGTGGTGCGTTTTTTGTGTTATTGT
ATATCGAACGACAGCAGCAGCAACAGCAGCTGGTGTGTATGTTGCATCAT
GTCTTGTTTGTTGTTTTTCTTCCTTGTTGCCCTCTGAGACAGCAATTCGC
GGTTGCTTCGCCTGTTCCGGCACACTTCATCGCAAGCCACCTTGTGGGTT
TCTCGTTCTTGCCCACCGCACCCGAGCACCCACTTCCCGATACATATTAT
TTTCTTTTCCGCCTTGGGTAGGTGGTGAAGGGTTCCCAGGAAGTGACGAC
GTCGTGACCATGGAAGTGGATGGCGATGGTGTTGCGGAAGAACATTTTGA
CTCGGCTGGAGGAATTTTTCAGATGATGGAACGTATCGAGAGTCTTGTGT
CGAACACCGAAAATGTCCCTGAGAGTTACATTGAGTCTGACCATCGCTCG
ATCGCTGATGGCCGATACGAGGACCCCGAGGAGGACCCTATCGGCATCGA
TATCGATGCCGGGGGCCAGCAGCAGCATCCCTTCGTCACAGACGACGCCA
TCCAGCCCGAACAAGATGACTGTCAACCCGACGATGAACATGGAAGCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1168:39256..40755+

>mRNA_P-littoralis_Contig1168.12.1 ID=mRNA_P-littoralis_Contig1168.12.1|Name=mRNA_P-littoralis_Contig1168.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig1168:39256..40755+ (Pylaiella littoralis U1_48)
ATGTCAACTGACGGACCAGGAGGACCACCAGGGCGCCTAGGCATAGGAGA
GAGCGGAGATGTTTGCAGCAAATGTGGTACATTATGGAGAAGAAGGAGGG
AAAGAATGCGGTGTGACAGTACATCTCGAAGACGTGACGACAATCCATTT
ACAAACCTTAAACGTAGGACCATAACAGCAGCAGCAGCAGCTGCTGCACC
GTTTGGCAGCCAACAACAAGACCACAGCCGCATCAATTCTCTACAGCGTG
GGGCGGCGGTAAGCACCGTCTCAACGCCAAGTACGGCCCCAGCGTATTCG
GGCGTCGTCGACGAGGTGGTGAAGGGTTCCCAGGAAGTGACGACGTCGTG
A
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