mRNA_P-littoralis_Contig65.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.45.1
Unique NamemRNA_P-littoralis_Contig65.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.45.1 vs. uniprot
Match: D8LQM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQM0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.090e-28
Identity = 73/159 (45.91%), Postives = 87/159 (54.72%), Query Frame = 3 
Query:  273 QQQFPGQQPYYTAGVLPAGXXXXXXXXXXXXXXXXPGGMNMGTPGTLLPNGQFLPNGWVPAPGYSTGPPVFAP--GPGVLGGGAVMADGTLAPAVGTQ-----DQQPQQFVGVPPGMTRESMQPGYDPRFRDQKRFFNPERSFTDSFGNTRGMRCCAIS 728
            QQ++PGQQP  +A + P G                PG MNMGTPGT+LPNGQF+PN             V AP  G G+  G       T  P VG        ++ Q+ VGVPPGMTRESM PGYDPR + Q+R F+P  SF DSFGN+R   CC IS
Sbjct:  126 QQRYPGQQPQ-SAAIPPVGIPAMMPAT--------PGSMNMGTPGTVLPNGQFVPNASPAQMSVLPNGQVMAPPAGGGMTAGAPGFPVHTQPPGVGPNMGPVITREQQEIVGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNKSCCTIS 275
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BLAST of mRNA_P-littoralis_Contig65.45.1 vs. uniprot
Match: A0A6H5LQM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQM1_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.210e-27
Identity = 68/135 (50.37%), Postives = 79/135 (58.52%), Query Frame = 3 
Query:  378 PGGMNMGTPGTLLPNGQF-----------LPNGWVPAPGYSTGP-------PVFAPGPGVLGGGAVMADGTLAPAVGTQDQQPQQFVGVPPGMTRESMQPGYDPRFRDQKRFFNPERSFTDSFGNTRGMRCCAIS 728
            PG MNMGTPGT+LPNGQF           LPNG V AP  + G        PV    PGV        +  L P + T++QQ  Q VGVPPGMTRESM PGYDPR + Q+R F+P  SF DSFGN+R   CC +S
Sbjct:    5 PGSMNMGTPGTVLPNGQFVPNATPAQMSVLPNGQVMAPSAAGGMTAAAAGFPVHTQPPGV--------EPNLGPVI-TREQQ--QVVGVPPGMTRESMAPGYDPRLKKQRRVFDPRYSFKDSFGNSRNRSCCTVS 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQM0_ECTSI2.090e-2845.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LQM1_9PHAE2.210e-2750.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:170582..175272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size747
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_006160.1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791354.1532285-UTR-P-littoralis_Contig65:170581..1705971680791354.1532285-UTR-P-littoralis_Contig65:170581..170597Pylaiella littoralis U1_48UTRP-littoralis_Contig65 170582..170597 -
1680791354.17768-UTR-P-littoralis_Contig65:171110..1711771680791354.17768-UTR-P-littoralis_Contig65:171110..171177Pylaiella littoralis U1_48UTRP-littoralis_Contig65 171111..171177 -
1680791354.1887584-UTR-P-littoralis_Contig65:175121..1752721680791354.1887584-UTR-P-littoralis_Contig65:175121..175272Pylaiella littoralis U1_48UTRP-littoralis_Contig65 175122..175272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791354.1645296-CDS-P-littoralis_Contig65:170597..1711101680791354.1645296-CDS-P-littoralis_Contig65:170597..171110Pylaiella littoralis U1_48CDSP-littoralis_Contig65 170598..171110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.45.1prot_P-littoralis_Contig65.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 170598..171110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.45.1

>prot_P-littoralis_Contig65.45.1 ID=prot_P-littoralis_Contig65.45.1|Name=mRNA_P-littoralis_Contig65.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
MEEVPELPAGYSQQPQQQQQQFPGQQPYYTAGVLPAGMQAVGIPSVGMPS
MGTPGGMNMGTPGTLLPNGQFLPNGWVPAPGYSTGPPVFAPGPGVLGGGA
VMADGTLAPAVGTQDQQPQQFVGVPPGMTRESMQPGYDPRFRDQKRFFNP
ERSFTDSFGNTRGMRCCAIS*
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mRNA from alignment at P-littoralis_Contig65:170582..175272-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.45.1 ID=mRNA_P-littoralis_Contig65.45.1|Name=mRNA_P-littoralis_Contig65.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4691bp|location=Sequence derived from alignment at P-littoralis_Contig65:170582..175272- (Pylaiella littoralis U1_48)
GCTCACACCCCGACGAAGCCATCGAAGCTATCATTTCCACGCTCGGACTG
GTTAAGAACAAGTTCTGCTGTGGAAACTCGGTCGGGGTAAGGTAGCAGCA
TTATTCTTCAACGGCTTCAGTCTTCGCGAGGACATACACATCAAACGAAA
TGTAAGCCGCCTGTTGAAGACGTCAGTTTCGTAAAATTTTGTCAACCAAC
TGACAAGATCAGCTCTGTCTCCCGGAGTTCAGAGATGTCACCAAGTCCCT
CGTATTTGTCTCGTGCAGCTTGGTGGTTTGCGCGGTTGCCCCAGTGCGTT
TCGCCACTGATGTACCACGGAGCACGCGTGGTAGTGTACTTTGACGTACG
TGACACCCAGTACAGGTATGCCCTGTGTGGTGCAATCGTTATTTCCATTC
AGGAAGGGAAGAATCCCTAATCCTGTCTGGCAGACACCTGTGCTGCTCCT
GGCCTTGGTTGACTTGCATCGGGCATCGGGAAGCTTGGTCAGCCTGTGGG
TGTGTGTGCGCGTTGCCTATCGATGTACCGGTCCCCTCCTCTCGCTTACC
CTCTCGTGTGATTTCTTGAGTTCCGGCCGGCGGCAAGCGACAGTGAACAC
TAACTTGAATGCTGACGATTATCATCCCTTTCTGTGGAAACGATGTTGTT
TGCGGCAACCCCCCGCAGATGGATCTAGAGAGACATCTTCAGCAAGTATC
TATGATTCGAGTAGTTTAGTGGTGGAGCGATGTTTCGAGCATCCACGTCG
TTGTGTCGACAGCCGTTGCACTGCTGCCGTGCCTGATTTCGGTCTTGCTC
GACTATGGACGGTACAGCAGTATCGCGTTGGGTCAACGCCAGGCAATTGT
AAGCTATTTTTCGTCTACACGATTGCCCGGCCCCACAGCATTAAAGTTAC
AGCATCAAAGCTGTGGTTGCTGCTTCTCCTCCTGATTCAAGTTGCAGAAC
GCAAGGAGGCTCCTTGATCCGGTAGTTCGAAGTTACGCTTTGTGCGCAAT
ATCAAAAGGAGCAATGTGCACGCTGTGTCTGCGCTACTTTTTTGTGCACT
GACCTCTATCCTTCGCATTACTTCAGCGTATGATATACACCAGTCATTCG
CCTTTCGTTTGCTGTGTGGATAAGGAGATGTATACGACTTGTGCATACAA
AAGACAACGTTGTTGAAGAATTTCTCGAAAACATTCTTGGTTATATATCG
TTCGTACAGAGTTCTCTGTCTTGATCTCTGTCTTTACAGCGGTACTCCAG
ACACTTCGAAGGATTCCGCTTTTTTTTATTTGCGCACAACGAGAGCTACG
AGTAACGGTTTGAGGACGCGGAGAGTGCAGCGGGGAGAGTCGCCACCCCG
ACTAGAATCGACACGTTTAAACGCCCTTCCAGGTCGCCGCTGCAAATAAA
CTTCATTACTTGTATATACTTGTGTGTATTGTCATCCCTTTAATTGGACG
CCGCTCTGCACCTTTCGGGTAGGTAGACGCTCCTACTGGGGTCACACAGG
GGGAAGTCAACACAGGAGATTTTTTTTTTTTTTCTCCACTTCCCTCTGCG
GTGATTGCCTTGTTTTGGTTGAGCTTTTATCGCGAGAAAGGGGACAGCAA
TCCCTTTCCCTCGTCGATGGTACGATCGAATTTTGTTTACTTGTACTCAC
GAATTGATCGCTTTCCACTTTCACGCGCACTGTGAGAAAAAAACCCAGAT
CGTGTTACTGCACTGGGATTCGAACTCACGCGTGAATGTCAGAAGGTTAC
GTGGGTTACCAACTGAACCACCGGGGCGACCGGCTTTACCTGTACAAAAC
ATATATTCGCGTCTGGGACGGGCAATATTTTTCCGGCCCGACGCACCTTT
CGCGGGCCCGAGACTCGACGCGCGAGCCGAGTCACAGCTTTTTCGAAGGC
CAAAGGACTCGCTCGCGACATTTACGGGAAAAATCCCGGCGCTGAGACTA
GACCTCCACTCGCGTGTTGTTCCGTGTTATGTTTTCGCTTTCGGCTCTGA
AGATTTGCGGACCCGTTTTTTCCCCAGCGCTGAAACTGGATGCGTTACAT
CTGAATGAGCATTCATATGACTGGCGTTTTTGTTTCCCCTTTCTCTAGAA
GCAAGTTGATTACGTATGAAAATAATATTCTCCCATTATGTTGTACCATG
GTTTATTTTTTTTCTGGCTGAACGGGTCGTTACTGTGAACAAGCACTTGT
ACAGCAGTCGATGGCCCGATTCAGCGGTACCAAGATCGCTTGGCACAAAA
TGTAGCTCGATATAGCGGCTGACCCTCGCCATGATGGATCGGACTGTCCG
ATAGCACCACCACCCACGATAAAACGCGACCGCTTCATTTTGTTATCGGC
TCGCGGCTTATTTGCCGCCGCTCCATTCGATCATCTGTTCCTGCACTTAT
TCTGCCATGCTCTTATTATCGGGCATTCAATTTTCCGCTGAAACAGCGGG
CTTGTTCTCATTCCGACATTTTCCATACACGTTGCACGAAGTTCCCTTGT
ACTTCGTACCTCTTTTCCGTACTCGGCAGGACAAGTGTCCTGTTGTTCAC
TCCGGGTTTTTCGCACCATTCGTCAAATATCTGTTCTCACCATGACACAC
AGCAACACTCACCATGTAAGCTTCCTCCACCTCCGGACAGACCGAATGCA
CCTACCGTAGCGCTCACAGCGCTCGCCTCTATGAAAAAAACAGCGAAAAC
CCTCTGCAGAACTCTGTATTGCACACATACCTCTCTCAGATCTACGCACC
CAAGCTTCTCCTCTTGTATCGAACAATTAACTACTTCGTAGAAAGAACAG
CTTTTGCGATGATTCTCAGGTTATCATGAAAGTGTGTGCCGGGTCTTGAC
ACGCCGCTCTGACACGCAGGATTTTTCTCAGAATGTTTCGCACGAAAAGG
CGAAAAAGAGCCAGACTCGACGAGAAAGCGGAAACTAACGGTAGGGCTCG
CACCCAACTTGCTCCTACCCGGGTACCCCGCCTCGGGTACCCGGTTCGAA
TTTTTTACGTCGGGTGCGACCCGTAGTATCGCACCCGACTTGCTCCTACC
CGAGTGCCCGACCTTGGGTACCCGGAACCGAGCAGCCCCATCGGGTACCC
GGTTCCAACTTTTGGAGTCGGGTTCGAGCTAACTAGCGGTCAGTCTTGAT
GATGCAGGTGGTCGATTCACGTAGCAGTATACGGTAAGCTGCAGCTCAGC
ATGCAGGAAGAACCTGTCTGGCCGCGGCACATCAGCTTCGAGATGTTGAA
TCACCTCGGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATCTT
TGTCGGATACGTGAACGAAAGCGAACAGGCTTTCAACAAACAAACACACG
TACAAACGCGATTTGTGCGTAGTCAGAGGGGTGGACGATCGAAAGGAACG
TCTTCGGATCTGTGCGGTTGAAAGTCAGCAACGGTTCCGCTGCTGTCCGA
TGTTGTGGGCACCCGCGCGCATCTTCGTAACAAAGCAACGATGATTTTGT
CCATCTTCTGTAAAAAAAGTTATGTGCCACACACGAAAGACGAGCGCCAC
AATATCTGTGTATAACACATTGACATTCCCGCCGAACGCCTAAAAGAAGA
ATGCGTTTTCCTTTTTTTCGCTGGTCGCAAACATATCAGGCACACACACA
TGCAGTGCGAAGAACTGCCGTTCTTTCTTCGGTCGCACGCTTGCTTTGCC
CCCCCTGACTTAACACAGGTGGCGTGACGGAAGTCCTGCTCGTGGGACCG
CTCTCGCTACCCCCCGATACCTGATCTCACACCCGGGATTGAGAGCGCAC
TACGACCACATTTACGTAGCTTTTGTGCGTGTTGTAAATCTGGCCAACAG
CTTGCTACTACGTTTACGTGTGGGATTCTCTTGGGGTGTTTTTTGGCCCG
CAGCTTTTATAGCGTTTTCTCGAAAACCGGTGCATACAAGCCCAGGTTCA
GCGGTATTGTAAATCCTTGTGTGTTTCACGTAAGGTTGGTCCCCAGGCAT
ATCGACAAAAGGATGGCTCTAAGAAAAATAAGTTGGTACTGCTGTTTCTG
TCGTTGTTGTAAACACCTTGTTGTTAACCACCCCTACCCGTACAGATTCG
CTGGAGCAACAGACGAGAGGAACTGACAAGCCGCCCCACCCCCCTAACCT
AGATCGGAAAGTATGGAAGAAGTTCCAGAATTACCCGCAGGATACTCTCA
GCAGCCCCAGCAGCAGCAACAACAGTTCCCGGGTCAACAACCCTACTACA
CCGCAGGCGTGCTTCCGGCGGGAATGCAGGCTGTGGGCATACCGTCCGTA
GGAATGCCTTCCATGGGCACGCCTGGGGGCATGAACATGGGCACTCCCGG
CACCCTCCTACCCAACGGTCAATTCCTACCCAACGGCTGGGTGCCCGCGC
CCGGATACTCGACGGGCCCCCCTGTGTTTGCCCCGGGCCCTGGTGTTTTA
GGTGGTGGTGCTGTCATGGCCGACGGAACGTTGGCTCCCGCCGTGGGCAC
ACAGGATCAGCAGCCGCAGCAATTTGTGGGGGTGCCCCCGGGGATGACCC
GCGAGAGCATGCAGCCCGGCTACGACCCGCGTTTCCGAGATCAGAAGCGG
TTTTTCAACCCGGAGAGGTCTTTCACGGACTCCTTCGGCAACACCAGAGG
CATGCGCTGCTGCGCCATAAGCTAGGCTAGAGGATAGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:170582..175272-

>mRNA_P-littoralis_Contig65.45.1 ID=mRNA_P-littoralis_Contig65.45.1|Name=mRNA_P-littoralis_Contig65.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig65:170582..175272- (Pylaiella littoralis U1_48)
ATGGAAGAAGTTCCAGAATTACCCGCAGGATACTCTCAGCAGCCCCAGCA
GCAGCAACAACAGTTCCCGGGTCAACAACCCTACTACACCGCAGGCGTGC
TTCCGGCGGGAATGCAGGCTGTGGGCATACCGTCCGTAGGAATGCCTTCC
ATGGGCACGCCTGGGGGCATGAACATGGGCACTCCCGGCACCCTCCTACC
CAACGGTCAATTCCTACCCAACGGCTGGGTGCCCGCGCCCGGATACTCGA
CGGGCCCCCCTGTGTTTGCCCCGGGCCCTGGTGTTTTAGGTGGTGGTGCT
GTCATGGCCGACGGAACGTTGGCTCCCGCCGTGGGCACACAGGATCAGCA
GCCGCAGCAATTTGTGGGGGTGCCCCCGGGGATGACCCGCGAGAGCATGC
AGCCCGGCTACGACCCGCGTTTCCGAGATCAGAAGCGGTTTTTCAACCCG
GAGAGGTCTTTCACGGACTCCTTCGGCAACACCAGAGGCATGCGCTGCTG
CGCCATAAGCTAG
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