mRNA_P-littoralis_Contig65.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.41.1
Unique NamemRNA_P-littoralis_Contig65.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A6H5L6L8_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6L8_9PHAE)

HSP 1 Score: 656 bits (1692), Expect = 2.470e-221
Identity = 389/679 (57.29%), Postives = 458/679 (67.45%), Query Frame = 3 
Query:  306 LRNAAVVLSVTATSAQAGSAEWTRRRXXXXXXNTPAFAPGGAXXXRTGLGLSTQQXXXXXXXXXXXXXXXXXXXXQY--LSMQLKELSPSLASASAEESADYKRRSVIRVLFRDKNATEVTGWMKTLKNLDGPEMPFDEMLELKSEMDRSMKANKESTERRSRRYKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEVLYSDRAVAR---EKDPAAVQAC------------GWDDGDCDGHDDDDDRHYGGLPPAVLIGLVKQALEPHPAAAGEEEEGEEMRDARGNVVTGARRRLMGEAIQAERARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVMKRARSPDGCXXXXXGMEVGIVASGHPTEPPPVTPNLAWQPSLQAA 2291
            L  AA VLSV ATSAQAGS EWTRRR      +  AF  GGA     G+G+                        Q   LSMQL  L          ES +YKRRSV R +F + +  EV+GWMKT K+LDGPEMPFDEM ++    D  ++A+KES E+  R+Y+HFDL RNP LLTK EEIELGRKVQELLRWERV+  LE+RLGR ATMEEWA ELA M G EG+ERE+ +M+AAR RMISCNLRLV+HIA++KFY G+SG+LK+SL+DMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQ IHCGFADCGRV+RLPM+LHTMVCKV+RLQTAM+DQLGRQPT+QELSLESGL+E+KV KCLRVN+VEPISLD   K + GHL+F+   + E++ D+++S +E EPV GADV+LLKTDVDTILGDLS REA+VLRMRFGIGG+SPSTL  VG+ L VTRERVRQIQ+AAI+KLRGRSP+H++LY+DRAV+    E+DPAA  A             GW           D+R YGGLP +V I LV +ALEP           +EM D  G VVTG RRR+M EA QAERA                                   FVMKRA SP        G   G  + G  + P P TP+  WQP+LQ A
Sbjct:    5 LHAAAAVLSVGATSAQAGSEEWTRRRGGSPTGDRFAFVGGGA-----GMGIRGGDGLLLTTPASAGISLRRRRSGQQHALSMQLNMLL-----YDDNESMEYKRRSVTRGIFGE-HEKEVSGWMKTFKSLDGPEMPFDEMCDMMDRGDSLLRASKESREKNMRKYRHFDLRRNPELLTKIEEIELGRKVQELLRWERVRMFLEMRLGRAATMEEWAAELATMGGVEGLEREIGIMKAARDRMISCNLRLVVHIAKRKFYKGASGTLKVSLDDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQGIHCGFADCGRVVRLPMSLHTMVCKVMRLQTAMVDQLGRQPTVQELSLESGLDERKVEKCLRVNQVEPISLDGYRKGKSGHLNFENSFRRERVGDSVKSVQETEPVDGADVSLLKTDVDTILGDLSEREAYVLRMRFGIGGSSPSTLETVGQELQVTRERVRQIQIAAIQKLRGRSPSHDLLYADRAVSLGRGEEDPAAAVAXXXXXXXAATANEGW-----------DERKYGGLPRSVFIDLVTRALEPPQ---------DEMLDKEGRVVTGGRRRVMMEAAQAERA--------------------------LVPKKLKKGFVMKRACSPRRRGRDGEGAP-GRGSGGGASLPVPRTPS--WQPTLQVA 623
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A836CM85_9STRA (RNA polymerase sigma-70 factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM85_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.940e-53
Identity = 128/319 (40.13%), Postives = 181/319 (56.74%), Query Frame = 3 
Query:  792 YKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGA---EGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGI-GGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLR 1736
            Y HF     P LLTK EE+ L R VQ  ++WE V+  L    G+  T+ EWA+ +    G    E   +++    +A+  MIS NLRLVL +ARK  +  S GS  + L D++Q+G  GLVKAVE++DPE+GFRFSTYATWW+ Q I     D GR IRLP ++H  +  V R+  ++ ++LGR  + +EL+   GL  +K+         EPISL ++P    G L  DK      + D++     P P    +   ++ DVD +L  L+ RE  VLRMR+G+  G    TL  +G  + VTRERVRQI+  A+ +LR
Sbjct:   86 YVHFRQA--PELLTKEEEVSLARLVQRRIQWEAVRNRLASEFGKEPTLSEWAVAVGFRGGYPLDEEFSQQVAEGDSAKAAMISANLRLVLSLARK--HKASQGSRCLPLSDLVQEGILGLVKAVEKYDPERGFRFSTYATWWIRQTIARAVCDIGRTIRLPAHIHDSLRSVQRVGRSLSEELGRTASEEELAQRLGLTVEKLRWLHSCKYSEPISLSLQPGNGSG-LRPDKQSLTSTVGDSVHDTN-PTPEEYHNTMAIREDVDNLLSILTPREQTVLRMRYGLDSGGISETLEAIGVSIGVTRERVRQIERRALDRLR 398
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 201 bits (511), Expect = 6.350e-52
Identity = 121/315 (38.41%), Postives = 186/315 (59.05%), Query Frame = 3 
Query:  816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
            N  LLT  EE+ L R VQ LL+WE V+  LE+ L R  T  EWA  +      + ++R+++  + A+  MI  NLRLV+ IA++  Y   + +L  S++D+ Q+G+ GLVKAVE+FDPE+GFRFSTYATWW+ Q++    AD  R IRLP+++H  +  V + +  +  +LGRQPT +E++  +G+   K+ + L  +  E +S +   +                I+    +++E  P   A ++L+K D+D +LG LS RE  V+RMRFG+      TL  +G+R  VTRER+RQI+  A+ KLR     H++
Sbjct:  183 NHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGV--DTKKLKRQIRRSQRAKAAMIESNLRLVISIAKR--YTSRTNTL--SVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKL-QFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQI 490
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO)

HSP 1 Score: 186 bits (472), Expect = 1.110e-48
Identity = 117/317 (36.91%), Postives = 182/317 (57.41%), Query Frame = 3 
Query:  816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISL--DVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
            N  LL + EEI L R++Q L++WE V+  LE  L R  T +EWA ++        ++++++    A+  +   N+RLV+ IA+K       G   +S +D+ Q+G  GL +A E+FDPE+GFRFSTYA+WW+ Q I    AD GR+IRLP+++H  +  V +L+  M  +LGR PT +E++ +S L  +K+    RV + E IS+  +VR  +  G             ++ +  + E +PV  A   +LK D+  ++  L++RE  V+RMRFG+      TL  +GR+  VTRER+RQI+  A+ KLR     H V
Sbjct:    3 NHELLNRNEEIVLAREIQILMKWEAVREQLETDLLRPPTYQEWANQIEPGMTVADLKKQIRRSLRAKAALTESNIRLVVSIAKKY------GRRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQGIMRAIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNRVTQ-ESISINEEVRSSKTKGSSAG--LGGTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAV 310
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: B8C130_THAPS (RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C130_THAPS)

HSP 1 Score: 186 bits (471), Expect = 1.520e-48
Identity = 115/315 (36.51%), Postives = 180/315 (57.14%), Query Frame = 3 
Query:  816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
            N  LL K EEI L R++Q L++WE V+  LE +L R  T +EWA  +        ++++++    A+  +   NLRLV+ IA++  Y G      ++++D+ Q+GT GL +A E+FDPE+GFRFSTYATWW+ Q I    AD  R IRLP+++H  +  V + +  + ++LGR  T +E++ + G++  K+ + L+   V  IS++           F        I DTL  + + +PV  A   +L+ DV  ++  L+ARE  V+RMRFG+      TL  +G++  VTRER+RQI+  A+ KLR     H V
Sbjct:   12 NHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKR--YQGRG----LNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATKEEVAAKVGMKPDKI-EFLKRASVGSISMEQELGTSGSERSF-------TIQDTL-GDPDQKPVDMAQYRMLQDDVGRLICTLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARALHKLRQPYRNHTV 311
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 187 bits (474), Expect = 7.180e-48
Identity = 120/318 (37.74%), Postives = 179/318 (56.29%), Query Frame = 3 
Query:  816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFD---KPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
            N  LL + EE+ L R +Q L++WE V+  LE +L R  T  EWA+  A      G++R+++  + A+  +I  NLRLV+ IA++    G      ++ +D+ Q+GT GL +A E+FDPE+GFRFSTYATWW+ Q I    AD  R IRLP+++H  +  V R+   + + LGR PT +E++ ++ +  +K+   LR  +   IS++       G           +N++ +  L  +  P PV  A   +LK DV  +L  LS RE  V+RMRFG+      TL  +GRR  VTRER+RQI+  A+ KLR     H V
Sbjct:   99 NHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAV--AVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRG------MNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLT-FLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSV 407
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A7C3TCQ9_9BACT (RNA polymerase sigma factor n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3TCQ9_9BACT)

HSP 1 Score: 181 bits (460), Expect = 9.360e-48
Identity = 117/280 (41.79%), Postives = 165/280 (58.93%), Query Frame = 3 
Query:  903 LELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTD-VDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRG 1739
            L  +L R  T EE   EL A   AE        M+ A+ R+   NLRLV+ IA+K    G      I+L D+IQ+G  GL++AVE+FDPEKG+RFSTYATWW+ +AI     + GR IR+P+ +  ++ K+++ Q+ +  QL R+PT+ EL+ E  +   +V + LR+   EP+SL+     ++          N Q+ D + S   P P   A VNL++ + +D +L  L+ RE  VL MRFG+    P TL  VG RLHVTRERVRQI+L A+KKLR 
Sbjct:    1 LRQQLRREPTEEELVRELGASRFAE--------MKRAKDRLTEANLRLVVSIAKKYSVRG------IALPDLIQEGNIGLIRAVEKFDPEKGYRFSTYATWWIRRAIARAIINQGRTIRIPVYVAEIIHKLVKAQSRLKQQLHREPTVDELARELEVSVDRVNEILRIAN-EPLSLETPVGEKE----------NSQLGDFIESETSPSPS-DATVNLIRREQIDEVLSRLTPRERDVLMMRFGLEDGYPRTLEEVGSRLHVTRERVRQIELRALKKLRS 254
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A6P1AB60_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AB60_9CYAN)

HSP 1 Score: 183 bits (465), Expect = 9.610e-48
Identity = 114/313 (36.42%), Postives = 187/313 (59.74%), Query Frame = 3 
Query:  804 DLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGR 1742
            ++GR P LLT  +EI   +++Q L+  E +K  L  +L +  T+++WA E A +  AE + +++     A+ +M+  NLRLV+ +A+K           + L D+IQ+GT G+ + VE+FDP KG+RFSTYA WW+ QAI    A+  R IRLP+++   + K+ + Q  +  +LGR  T+ EL+ E  LE K+V + L   + +P+SLD+R              ++ ++ D L  + +  P   A  +LL+ D++ ++ DL+ ++  VL++RFG+G   P TLA +G RL+++RERVRQI+  A+ KLR R
Sbjct:   17 EIGRVP-LLTHEQEIHYAKRIQRLVALEEIKEKLAKKLSKEPTLKQWA-EAAELTEAE-LRKQIAAAETAKRKMVEANLRLVVSVAKKYI------KRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQELGRAATIAELAAELDLEPKQVREFLEQGR-QPLSLDLRVGDN----------QDTELGDLLEDDGQ-SPEDYATQSLLQLDLEKLMADLTPQQREVLKLRFGLGNELPLTLAKIGDRLNISRERVRQIEREALTKLRKR 308
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: A0A1Z5JWI1_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWI1_FISSO)

HSP 1 Score: 187 bits (476), Expect = 1.030e-47
Identity = 115/318 (36.16%), Postives = 180/318 (56.60%), Query Frame = 3 
Query:  816 NPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVR---PKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEV 1760
            N  LL + EEI L R++Q L++WE V+  LE  L R  T +EWA ++        ++++++    A+  +   N+RLV+ IA++       G   +S +D+ Q+G  GL +A E+FDPE+GFRFSTYA+WW+ Q I    AD GR+IRLP+++H  +  V +L+  M  +LGR PT +E++ +S L  +K+    RV + E IS+D      K +               ++ +  + E +PV  A   +LK D+  ++  L++RE  V+RMRFG+      TL  +GR+  VTRER+RQI+  A+ KLR     H V
Sbjct:  138 NHELLNRNEEIVLAREIQILMKWEAVREQLETDLLRPPTYQEWANQIELGMTVADLKKQIRRSLRAKAALTESNIRLVVSIAKRY------GRRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQGIMRAIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTAKEVAEKSNLTLEKIEFLNRVTQ-ESISMDEELRTSKSKGSSAGLGGAGGRGITLEEIMGDPESQPVEEATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNHAV 448
[Close]
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Match: UPI0016891ABA (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Alkalinema sp. FACHB-956 TaxID=2692768 RepID=UPI0016891ABA)

HSP 1 Score: 183 bits (465), Expect = 1.070e-47
Identity = 125/323 (38.70%), Postives = 185/323 (57.28%), Query Frame = 3 
Query:  804 DLGRNPTLLTKTEEIELGRKVQELLRWERVKAHLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLVLHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIVDTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSPSTLAVVGRRLHVTRERVRQIQLAAIKKLR-GRSPTHEVLYS 1769
            D+GR P LLT+ EEI+ G++VQ+ + ++ VKA L  RLG   ++EEWA EL      + +E  ++    A+ RM+  NLRLV++IA++  Y   +    + L D+IQ+G  GL   VE+FDP++GF+FSTYA WW+ QAI    +   R IRLP++L   + K+ R Q  +  +LGR  TL E++ E  LE +KV++ L   K  P+SLD++    +          +  +VD L  +    P V  +   L  D+ + +G+L      +L MRFG+ GN   +L+  GRRL ++RERVRQIQ  A K LR G S     L S
Sbjct:   21 DIGRVP-LLTREEEIQYGQQVQKRVEYQAVKAALAARLGHDPSLEEWAAELELT--VDELEAVVEAGEFAKRRMVEANLRLVVNIAKQ--YQNRN----VDLLDLIQEGALGLQMGVEKFDPDRGFKFSTYAYWWIRQAITRAISQSSRTIRLPIHLVEALNKIKRSQRELSQKLGRTATLNEIATELDLEPEKVLQYLSYAK-RPMSLDMKVGDNE----------DTDLVDILE-DESTSPAVHLEKVALSQDLQSAIGELPPIMQEILVMRFGLDGNEALSLSEAGRRLGMSRERVRQIQQKAYKLLRQGHSEIRHYLAS 322
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6L8_9PHAE2.470e-22157.29RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
A0A836CM85_9STRA4.940e-5340.13RNA polymerase sigma-70 factor n=1 Tax=Tribonema m... [more]
A0A7S1B782_9STRA6.350e-5238.41Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1Z5JFS9_FISSO1.110e-4836.91RNA polymerase primary sigma factor n=1 Tax=Fistul... [more]
B8C130_THAPS1.520e-4836.51RNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A7S2KJI8_9STRA7.180e-4837.74Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7C3TCQ9_9BACT9.360e-4841.79RNA polymerase sigma factor n=1 Tax=Armatimonadete... [more]
A0A6P1AB60_9CYAN9.610e-4836.42RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A1Z5JWI1_FISSO1.030e-4736.16RNA polymerase primary sigma factor n=1 Tax=Fistul... [more]
UPI0016891ABA1.070e-4738.70RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:155089..167045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQM1
PFAMsSigma70_r2,Sigma70_r3,Sigma70_r4
Model size3364
Max annot lvl2759|Eukaryota
KEGG koko:K03093
Hectar predicted targeting categorysignal peptide
GOsGO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006091,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009553,GO:0009628,GO:0009637,GO:0009639,GO:0009651,GO:0009657,GO:0009658,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010114,GO:0010207,GO:0010218,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015979,GO:0016043,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019684,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032501,GO:0032502,GO:0032774,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0104004,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2001141
Exons8
Evalue7.03e-230
EggNOG OGsCOG0568@1|root,2QRMD@2759|Eukaryota
Ec32 ortholog descriptionRNA polymerase sigma-70 like domain
Ec32 orthologEc-10_006180.1
DescriptionSigma-70, region 4
Cds size1995
COG categoryK
BRITEko00000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.41.1prot_P-littoralis_Contig65.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 155642..165975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791353.9796813-UTR-P-littoralis_Contig65:155088..1551501680791353.9796813-UTR-P-littoralis_Contig65:155088..155150Pylaiella littoralis U1_48UTRP-littoralis_Contig65 155089..155150 +
1680791353.994906-UTR-P-littoralis_Contig65:155404..1556411680791353.994906-UTR-P-littoralis_Contig65:155404..155641Pylaiella littoralis U1_48UTRP-littoralis_Contig65 155405..155641 +
1680791354.1206813-UTR-P-littoralis_Contig65:165975..1670451680791354.1206813-UTR-P-littoralis_Contig65:165975..167045Pylaiella littoralis U1_48UTRP-littoralis_Contig65 165976..167045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791354.0069375-CDS-P-littoralis_Contig65:155641..1561541680791354.0069375-CDS-P-littoralis_Contig65:155641..156154Pylaiella littoralis U1_48CDSP-littoralis_Contig65 155642..156154 +
1680791354.0388098-CDS-P-littoralis_Contig65:160350..1604461680791354.0388098-CDS-P-littoralis_Contig65:160350..160446Pylaiella littoralis U1_48CDSP-littoralis_Contig65 160351..160446 +
1680791354.054688-CDS-P-littoralis_Contig65:161248..1614401680791354.054688-CDS-P-littoralis_Contig65:161248..161440Pylaiella littoralis U1_48CDSP-littoralis_Contig65 161249..161440 +
1680791354.0678911-CDS-P-littoralis_Contig65:161974..1620491680791354.0678911-CDS-P-littoralis_Contig65:161974..162049Pylaiella littoralis U1_48CDSP-littoralis_Contig65 161975..162049 +
1680791354.07943-CDS-P-littoralis_Contig65:163083..1632931680791354.07943-CDS-P-littoralis_Contig65:163083..163293Pylaiella littoralis U1_48CDSP-littoralis_Contig65 163084..163293 +
1680791354.0898452-CDS-P-littoralis_Contig65:164512..1646531680791354.0898452-CDS-P-littoralis_Contig65:164512..164653Pylaiella littoralis U1_48CDSP-littoralis_Contig65 164513..164653 +
1680791354.1004746-CDS-P-littoralis_Contig65:165207..1659751680791354.1004746-CDS-P-littoralis_Contig65:165207..165975Pylaiella littoralis U1_48CDSP-littoralis_Contig65 165208..165975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.41.1

>prot_P-littoralis_Contig65.41.1 ID=prot_P-littoralis_Contig65.41.1|Name=mRNA_P-littoralis_Contig65.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=665bp
MRLRNAAVVLSVTATSAQAGSAEWTRRRGGGGSSNTPAFAPGGAGGGRTG
LGLSTQQSQLQQLKANSNLRRRSRPKPQYLSMQLKELSPSLASASAEESA
DYKRRSVIRVLFRDKNATEVTGWMKTLKNLDGPEMPFDEMLELKSEMDRS
MKANKESTERRSRRYKHFDLGRNPTLLTKTEEIELGRKVQELLRWERVKA
HLELRLGRTATMEEWAIELAAMDGAEGVEREMKVMRAARTRMISCNLRLV
LHIARKKFYMGSSGSLKISLEDMIQDGTAGLVKAVERFDPEKGFRFSTYA
TWWVHQAIHCGFADCGRVIRLPMNLHTMVCKVIRLQTAMMDQLGRQPTLQ
ELSLESGLEEKKVVKCLRVNKVEPISLDVRPKRRDGHLHFDKPRKNEQIV
DTLRSNREPEPVVGADVNLLKTDVDTILGDLSAREAFVLRMRFGIGGNSP
STLAVVGRRLHVTRERVRQIQLAAIKKLRGRSPTHEVLYSDRAVAREKDP
AAVQACGWDDGDCDGHDDDDDRHYGGLPPAVLIGLVKQALEPHPAAAGEE
EEGEEMRDARGNVVTGARRRLMGEAIQAERARAAAAAAAAAAAAAGSHAD
EKEAASPVKGKKKKRDFVMKRARSPDGCGGGGGGMEVGIVASGHPTEPPP
VTPNLAWQPSLQAA*
back to top

mRNA from alignment at P-littoralis_Contig65:155089..167045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.41.1 ID=mRNA_P-littoralis_Contig65.41.1|Name=mRNA_P-littoralis_Contig65.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11957bp|location=Sequence derived from alignment at P-littoralis_Contig65:155089..167045+ (Pylaiella littoralis U1_48)
CTTGCCTTTCTTCCCACCTTTTCCCTTGCTCAAGCCCTTTCCCCGGTTGC
CCATCGCTGAGGGTAAGGAGCCGTGTCTGTCTGTGTACCTATTTCTGTAG
CGATGAGACGGTCGAGGGTTCCTATGCTTCCCCTTATGCTCTGCTGGGGT
TCAGGTGTCCTGCTGTAAAGTAAGCCTGCCCCCGGCTGCTATGCTGTGTG
CTGCTATGACAGAAGTAAAGTACCGCTATTTGTTTCGGAGATTCTAGTTT
CCACAGTAATATACGTTCTGGTTTTCTGGCTTGTGTCCTCCGGTGTCCCC
TGTATGTATGTGTCAGTGTCAGGAGAGAAGATAAAAGGGGGAGATACAAC
AGCAGAGGGGAGACACACAGCAGTAAGAGCGAGTGCACCTTCCTCATTGC
CTGAGCGTGGGAAAGAACGAAAGGATAGCACCACGTGCATGTGTTCGAGG
GCCACCGTATCTAGCTTTGGTTGCACATCTGGCAACGTGAGCGGTCTTTT
TGCAACGAGTTAGATTCCGCGGAGTCAGGCCATCGAGCCACACTGCCTCG
GACATGCGCCTCAGGAATGCGGCGGTGGTACTCAGCGTCACCGCTACTTC
AGCCCAAGCAGGGAGTGCAGAATGGACCAGACGAAGAGGGGGGGGCGGAT
CGAGCAACACCCCGGCGTTTGCGCCAGGAGGAGCTGGAGGAGGAAGAACA
GGTCTCGGGTTGTCAACACAGCAGTCGCAGCTGCAGCAGTTGAAGGCAAA
TAGCAATCTACGACGACGTTCTCGACCCAAACCCCAGTACCTGTCGATGC
AGCTCAAAGAACTGTCCCCTTCCCTGGCCAGTGCGAGCGCCGAGGAGTCA
GCGGACTACAAGCGCCGGAGCGTCATCCGTGTGCTCTTCAGGGACAAGAA
CGCGACGGAGGTGACGGGGTGGATGAAGACGCTCAAGAACTTGGACGGGC
CGGAGATGCCGTTCGATGAGATGCTAGAGCTCAAGTCGGAGATGGACAGG
TCGATGAAAGCCAACAAGGAGAGCACGGAGAGGCGAAGCAGGAGATACAA
GCACTTCGACCTCGGGGTGAGTCGAGGCGCAGAGGAAGTTGCTGCGCTCG
GGTGACAGAGGGGAAGGCAGCACGTGTTGTTGTGCTGAGACGCTTGTGTG
TCTGCGTCCACTTGCTTGCATCCAGTGTATCATAGCGCGGATCCGAAACC
CTGCTGTCTGCGGCATATTTATTCAAACCCAATTCGAAGGGTTTAAAAAA
AAAAAGGTGTACTGCTGTTATAATGCAGCAGTTTCCTATTCCCTTCTTTG
TGTTCGAATCCTCGTCGGAGTGAAACGGACACACTGATGGGTTCGTAGAA
AAATAACGAAGTACAAGAAGTAACTTTTTTCTGTTTGGATTACGAGTACC
GTAAACTACACAAGATAACACACCCCCGGTGATACATTTGAGCGCTTGAA
AATATTATCACCGGGTGTGGTATTGTGGGGGGGTGTGGTATCTTGTGTAG
CCCCGGTGATAGAGTGCTGGTGGCGGCGGCCCCCAAGGGGTGTGATAAAC
CAGGGGGTGTGATAGCACGTCCGACCACCCACAGGGTACGTCTGGGGGTG
TGATAAACCAGGGGGTGTGATAGCACGTCCGAACACCCACAGGGTGTGTT
TGGGGGTGTGATAAACCAGGGGGTGTGATAACCTCCGAACACCCACAGGT
CGTGCTTGGGGGGGGATACCGAAACACTCCTCCCGTGTAGACTTGAGCCG
CTGCTGCCGGACACTTGAAGCGGTGTGGTATTGCGGGGGGTGATACCTGT
CCGAACGTCCGCACACACGTTAGGTTATTGCGGGGACAAAACTCCTGAGC
ACATTACCTCGACGATGACTGACCCCCCTCAAAGCCGAGAAAGCTCGAAA
AAAAAATGTCAGCTCTCTTGTCTTGATGGAGCATCAAAAAGTGGAAATTA
AATCGAAGATACCTCGCCCGATATGACGCGAGACGGCGCCACAGAGTACG
CCATCTGTCCTGCCCTCTTCAAAAACGTACCAGGCTGCTGCAACAAGCAC
GACCAAAAGTCCAAGACCACGAAACACAACAACGTTGCACTGTACGCGGC
TAAGAAAACAACGCTCGAGTTGAAAGAACGACGTGATTTGTGGCGCCTGC
TGTACTGCTGCGGTCGAAGCAGTTGTCGGAAAAGCGGGGGCACCAGAGGC
ATTCTGCTCTCCCTCAACGTTCATGTTCTTGGAGGTCTCCACACGGGGTG
TTCCCCCCGCACACAGGGTGTGGTGTTGTGTGCCCACGGGGCAGATGTTC
TATCACCCCGGTGGTAGAAAGGAGGGGCCCCGTGAATGTATGCGGCGTAA
GTAAAGTTATCACCGGGGGTGTGGTATCTTGTGTAGCCCCGGTGGTAAAT
CGATGGTTCCAAAAATGCGCCCAAAATTATCACCGGGGTGTCGTAATCTG
TGGGGGGTGTGGTATCTTATGTGGGTGTGTTATCTTGTGTATTTTACGGT
ATACAACTGGAACATCAGGAGCAAGCAGACAAATTTTTTCAGAGACAGCA
GTGCCGGTCTCTTCTTTTCGTCCTCTCCGCTCCTATCCTTTCATGCTCGT
GTTGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCC
GTGGTCACAAACCAGGCGCATATCATGCTAGGAGGAAAAAAAATAAAATA
AAATATACTCCGTATGGACTATTATCCCCCACAGTCAGATCAGATATGGT
ACCGTTGGGGTACCATCTGTGGTGGCCAGAGTGCCAAACAAAATGCATTA
AAAAAATAACAGACTCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAA
ACAAAAAATAACCAAGACAAACCTCAACCATAGCCATATACTTCGAAGTA
CTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGC
AAACCAGGGCGATGGTCCAGTAACTACCGGTATATGATCAATAGACGAAA
GACAAAAAAATATAAAAGAAGAAACAGGGAGGGCACAAAGACTGAGGGAG
TGCACTCGTACACAAACACAACAAACAGGCCGCCAAACAAAGAGGAAGCA
GGGGAACGAAAAGGGAAAAGAACAAAAGAGACAAAGAGGAATAAAATACA
TGCATGGAGAGTGCAGAGGGAAGACTGGAAGTGAGTACCGGAATTCCGGG
GGGGGGGGTAGGTGATAAAAATAAAATAAAAGGCATGCAATCAATCGCAA
ACATGTCTTGCCACGAGGTCTGCCTGTTCACGCTTACTCTCCTCAGTCGC
ACTCATGCCTCCTGCTACTGGCACCACCGTACCCAGCTGTTTCTGCCCCA
CATCTTTGGCAGCAGCTACACCACCATTCCGCCCTACAGGTTTTCCACTC
CGGCCACCCCGTAGCTTGGCTTTGGGCTGCTTCTTCTTGTGCTGTGCAAC
TCCAACCCCACTACCCCGCTGCCCTTGTGCCCCCCCCGTACCCCTCCTCT
CGTTTATCCCCGCCATCCGTTCTCCCTCTTTTGGCCAAGGCCTGCCCCTC
AGCCGCGTCCCTCTCCCTTTTCCGTCGACGTGTCTCTGATAAGTCTCCCT
CTTTCTTGAGCCACTCGTCCGTGAACCGCCGCGCACCCTCGTCGATCCTG
TCGTACCACTCGTCAGCTCTCTTGACACTTGCCTCCCACCCCTCTTTTTT
GTCGACAACGATGTCGAACGCTTCGAGGTCCTCCTGCTCGTGTGACATCA
TGTGATATGTAGTACCTGGTAGGTTTTTTATTTTTTGTAAGGTTTATTTA
GAACGCCGATCGATTTTCCCCTGTACTCGATCGAGCATTTTACTGCTGAA
GGTTTTCGATCGGCTGTTCTTACGGTGATCGTTTTTTCCCACCGTTTTTT
TCAGGACTGCAGCAAGACGCACCGGTAGCACCAGCAGCAAGAAGAGCATT
TTGTCTGCTGCGAGACCAGGTTATACTTCAGCTTGTAGTTCTCGAACGAA
CAAGGCCACAGCAATGTCAAAGCCATCCCCCGTGAGCTGTGTGTATATAG
TTCTTCTCATGTGATGATCGTCTGAGCCTTGAGGCTGGGGTAGGCTCGCA
ACAAGGTTGGTTGTTGATGTGCTGTTTGTCGAGCACACCCGAAATACAGT
ACACGAGGGAGTTGTTGTTGCTCCGCGTAGCGCCGAGGAGGCATTTTTCG
CCTCTGGCACGGTTGGCGTTCTCACTCACCACTCCCGAACGGATGCAGCC
ACAGCAACGCCAAAGGCATCTGCCGTGAGCTATGTGTATGGTCCTTGTCG
TCTGGTGATCATGTCGGTAAGGGTTACATCGGTACGTCGGCAAAAAAACA
GTTTGCTTGTCTCAAACCACTCGTGGAAACTTGAAAATTCTCCTATCGGA
CAGTGCTGCCGCGCAACAGAACCTTCCTCTCTTGTTTGCGAGCCTACCGA
TGCCTCGCTGACCGAAACAATCATCACACGAGAGGGATCACACTCAAAGC
TCACGGCAGATGCCCTTGTCAAAGCTGCCGCTGTATTCGTTCGAGGGTAG
TAGTGGTGGATGAAACAGTAAACCGGTGCCAGGGGAAAAGGATCTGCTGG
GCGGAGCCATGTAATAATGTGAGGGCACGCAGAAAACAAACAGACACCTG
TTTCCACTCTGTTTTTTACATGAGCCGCATGGTCATATGCGACGGTATTG
CACATGGCATTCCGAAATAAAATAGAAAAATACTGATACAAAATACTCCG
AAGTACAAAATACCTCCAAAAAACAATACACAGCTGCATTCTCCCGAGGC
TCCAAATACGAGTCTGGTTCCGAGTGTGAAGACACCGGCGACCACATACG
CACCCGCCAACCAAATGTTGCACGTAAAATCCCGACGTGCCCAACCCCCC
CCACTTTCTCCCTCCTGGTACTGATGTACCGCTGGTGACATGACGTTAGA
TACCACACCCCATGGACTGCTTTTGAAAGCTTGGTTGCTCACTCCACAGC
AGGACGAGTGTCAGTACCGATAACTGTGGCGTTATACAGATAACGAAGCG
TTATACAGGTCTTGTCAAGAGCTACTCGAAAACACATCGTTTGGTGTTGG
CGCCCTGTCCGTTACGGATTAATCGACCTATCGTTGAAAAATAGCTAGGG
TGTGTGGTACCTTTGTCACCTATGGTAATGTATGTGAGACTGACCGCTGT
CTTCCGCGTGTCTGTCTGCAATGTGTACGTTCTTCCTTTCCTCTGTCGCG
CTGCCCTTCCAGCGTAACCCGACCCTCCTCACCAAAACGGAAGAGATTGA
GCTCGGGAGAAAGGTGCAAGAGCTTCTACGGTGGGAGCGCGTAAAAGCTC
ACCTCGAGGTGAGCTTTTTTTATGTGTTCGTTCTCACCATGAGCTTGTCA
GACAGAAATCCTCAACTAGAGGGGGGGGCGGCGGCACTTGAAGCCGCTGG
GGGGGTTAATGGAGGGGGGGGAGGGTCGTGTTGTTTAGGCCACTTTCAAT
ACTTTTACGTATCTGCACCTGGTGCTTCTGTGGTGCTACCTTGTGCTATC
TTGTGTGAGCCTTGTGCTACAAGACATACACTGATTCTTTGTTCCAAACT
CGGAGATGTACAATACTGAGATGTGATGTGATCTAGGTGTGACTTGATGG
TAGGCCGACCTCGAGAATAAAGCGTTCGTGTATGATACTTTCCCCCTTGA
CGTCCCTCTGCCGTTTGCGAGGTACCATTCGTAGACGATTTATAATACAT
TCTCCGTTGTTTTCTTCTTCATGCCGTCGAGCAGAACAAGTCATGAGCGG
CCTTGTCACGCCACAACGACTGCTGTCAGACAGACATGTATATCTACTTT
CGATGTATCGTTTTTCCTTTTACTGGTGCGGGAAATACCTGTCGCATCTC
GCCCTTGCCGGAACCAACCGTAAAGTTTTGTCCTGTAAACACTCACGGCC
GAGCAGAGCCGCCGCAAAGACAGCTGTCTGGGGGTGGTGCTGAGCTGAGC
TTTCCAACAACCTCGGGTTTTCGAAACCCACTTCCAAGCACTACAGCAGT
ATCGTCAATATGCGATACCAGTGTTAAATTCTACCCCTTATCCCCGTCAT
TCAGCCCTTCCTCCTCGCTGAAACCCCTTTGTTATTTTTTTTTCTCCCGA
TCTGCAAAAGCTACGGTTGGGGAGAACAGCGACGATGGAGGAGTGGGCGA
TAGAGCTGGCTGCCATGGACGGGGCCGAGGGAGTGGAGAGGGAAATGAAG
GTCATGAGAGCGGCCAGAACGAGGATGATCTCGTGCAATCTTCGCCTGGT
TTTGCACATCGCTAGGAAGAAGTTTTATATGGGATCGTCAGGCAGCCTTA
AGGTATGCATACATACATACATACATACACAAAAACAACCGCGTTCATGA
AATACACGCGGTTGTTGTTGCTGTTGCTGCTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTCGATGTTGTTGTCGTTGGTGTTGTCGTTGCT
GAATTTCCGGTGATGATGGCGAAAATGATGGTTTTGATGTTGGCGCTGAC
TTGACTGTTGTCGTTATTGTTGTAATGTGCATAGTGAGGTGGATCCACGG
CGGCCTCTGTCGCCGCTCCACTTTTTTCTCGTTTCTGTTCCGATTTTTGC
ACCCGAGTACCCCCCCCCGCATCTTCCGCCGCACTGGTCAAACCGGCACG
AGGCGACTCCTCTTTTGGTACTTTCGTGGTGGCGACAGACCGATTGGCAC
AACAAAAAGAGGTTCGAAACATGTTTGTATGTATGCTTGTACGTATGATA
TGTACTCAGGTTTGAAGATCATGTTTTTGACGTTTTGCATCGCTTGTGCA
GTAAATTAACGCCATGACATGATAACCATGTACCAGATTAGTCTGGAGGA
CATGATCCAAGACGGCACGGCCGGGCTTGTGAAGGCCGTGGAGAGGTTCG
ACCCTGAGAAGGTGAGACTTGCGCTTCCGAGGAAACTTCCGAGAAAGCTT
CCCTTTTATGGTGTGCGGGAAGAGAGACTATTCGGGGCTTTTGGTGTATG
ATAGCGCAGGAGAGAGAGGGGAAACGCCTGGAGAGTTGTTTGCGAATCCG
GAAGCGGAGATTTTTTTTTTATATTTTCTTCTTTCTTTTGAGGGCAGGTA
ATTACTGGAGGGTGATTCTTATTTTTTCCAAAATGACAAAAAAAAAAAAA
AATGATGGGAATAATAGAATCCCGAAGTTCATTCGAAGGTAATGAATGAT
CTCGCCGTGTGGTGATACCAAACGTGTGTGTTGTAGGGCTCGCACCCGAC
TCCAAAAGTTGCCAAAAGTTGGAACTGGGTACCCGGAAGGGCTGCTCGGT
TCCGGGTACCCGAGGTCGGGTACCCGTCGGGTACTCGGGTAGGAGCAAGT
CGGGTGCGATACTAAGGGTCGCACCCGACTCAAAAAATTGGAATCGGGTA
CCCGGTGGGAATACTCGGTTCCGGGTACCCGAGGCCGGGTACCCCGGTAG
GAGCAAGTCGGGTGCGAGCCCCAGTGTGTTGAAGGGCTTGCCAACGCGAC
CATGGTCAAGTGTCATTCGAGGTGGGTCTGGGCTGTACCATACTACCCTC
ACAGAAACATTTGCATGTGTTTGGGAGACTGAATGAAATGAACGAGAATC
ATGCTATAGTAGTATTGGATGGTTGTGGGATTCTGTGGGATGGTACAGCA
GTACATGATGTACCAGCGGTACAGCAGTACATGATGTACCAGCGGTACAG
CAGTACATGATGTACCAGCGGAGGCTTGCAGTTTCAGTCCACGCAGCCGC
TAGTCGGACTCTCTTGCGAGATGACGCAGAAGCTCTTTCTTCACCGTGCC
TTGAATTCTTCCCCCGTCTCTCTCTCTCTCTCTCTCCCCCTCTGATTTAT
CTTTCGTTCTTCGTGTCTGACCCTCGCCATTTGCCCGTTTCGTTTTTGTC
TTGTCGTGGCCTGTTCTTGTGGAACACAAAAAACAAAACAAACAGGGGTT
TCGTTTCAGCACGTACGCGACGTGGTGGGTGCACCAGGCCATCCACTGCG
GCTTCGCGGACTGCGGGAGAGTGATACGGCTGCCGATGAACCTGCACACG
ATGGTGTGCAAGGTGATCAGGCTGCAGACGGCCATGATGGACCAGCTGGG
GAGGCAGCCCACCTTGCAGGAGCTGTCGTTGGAGAGCGGCCTTGAAGAGA
AGAAGGTGTGACGTGCCATCGTGTGACATGCGGTGTGACTTTTTTCCGAA
AGGTCGGAAGGCGTCATGCGGTATGACATTTCCCAGAATGCGGCGTAATT
TCGGGTTGCGGCGGTGCGGCGGGGGGTATGGCCGGTGTTTATCTGTGTGA
CGCTTCCGTTGATCATTTCTTCTCACTTTTCTGTCTCGTGAGCTCGCGTC
CTCAGGCGCTTGGTACTGCTGCTGTAGCGTTGCGGTGAAGTCGATCCAAC
GTGGTCAGGAACATACATGTTGTTGTTGATTCTCACATTAGCTCACTACC
GCCGCAGTCTAGCCCGTGGTCACAAACCAGTCACATATCGTGCTAGGAGG
AAAAAAATAAAATAAAATAAATGGACTATGATCACCCACAGTCATATCAG
ATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAAAGTACCAAACGAAA
TACAGAAAAAAAATAAGAGGCTCGAAAGAAAAAACAAAAATTGGAAACGT
ACGACAAACAAAAAATAACCAAGACAAACCTCAACCATAACCATATACTT
CGAAGTACTTCGTACATACCTCTGTGTGAAGACGGTGGAGTATGATCGGC
CGGGCGGCTCAAGAGCGCTTGAACACTTCGAAACCCTGAGTAATATCTCC
GATCTATCTGCATTCTCACGTGCATTTTTCCAAAAAAGGGGTAGACGGTC
CGCCTCTTAAATGTAGTGTTCGTTCCATGGTGGTTTCTTGTAGTTTGAGT
CCCGTTTTGTACGATAGGCCAGCCAACACTGTTTCTCAGCAATCTCGCTC
ACTACTGCTGCTGTGTGCTGGTAATCGAAGTTCGGCACAATATTCCCTTC
CGGATCATCAAATAGGTGGGTTTTGATACAACAAGTGTGTTTTGTGGGTG
AAATAGTGACGATTTCTCGCTAGAAAAAGAGAAAAAAAGGACTCCTTCGT
CGGCCTTCCTCGTGTGTGACCCTGCCTGGCGCCCCGCCAGATTCATACCG
AAAGCTGTGGACTGGGGACCGGAACAAATGGGATGGCAACGCGCACAAAC
ATACACATACTCGCATGCACACACAAATCGCTGACCGCGAGGCGTTTCCC
ATCTCCAATCTCTCGCGCGGTTCGCTTCGTTTCTATTTCGGTTTCGCGCA
TCTGAAAAATGAAAAAAAATGAAAAAAACTTCGCTGTTGTCATCGTCCGC
CCGCAATCGATCCCACCAACCAAGGTCGTGAAATGCCTCCGCGTGAACAA
GGTGGAGCCTATCTCTCTGGATGTCCGTCCGAAGCGGAGGGACGGCCATC
TCCACTTCGACAAGCCGCGCAAGAACGAGCAGATCGTAGACACCCTTCGA
TCTAATCGCGAACCGGTGCGGTGGAACGTTTCGGGAACTTTCATAGTCAA
AATCGATGCAGCGGCACGTGGATATATGATGCTGTGCATCGTATAATATG
CAACTTTTCTTGCGTTCCTTGTGTAAGGAGACGTTCGAATCAAATTGATT
TGTCACGACTTGTGCTTCTCCAAAAATAGACGGAATTGTGTCCCTCGTCT
AGCACTCGATCTGGATAAAACAAGGGATGGCACGTGAAGTGGTTGGGTTA
CACGGGGGCAAGTTCAGAGTAGCAAGGTGGCGATGAACGTTGTATCTCAC
TTCGACCTGAAGTTGTCGTACGGTAACGCTCTCCTAACATGAAAAAATGA
ATAACTTCATGTCCGGCCTCGAACGCGTTCTGTAACCGCAACTAATGTGA
ATGAAGTATCTTCCCTAACGAGCACACGCGAATTATTTTGTTGAGCCCAA
CAACAACAGCTGACGACATTTCTCTTCTCTACGCCACCACGCCTCTTTTT
CCTCTCTACGCACACCGTTCCAAATCAAACATCCTGCCGTTTGTCCCAAA
AAAACAAACAAAAAAACAGGAACCTGTCGTCGGCGCGGACGTGAACCTGC
TCAAGACAGACGTCGACACCATCCTCGGCGATTTGTCCGCCAGAGAGGCC
TTCGTCCTCCGGATGCGCTTCGGCATCGGCGGCAACAGCCCCTCCACCCT
CGCCGTGGTGGGGCGACGGCTGCACGTCACCCGCGAGCGCGTCAGACAGA
TCCAGCTCGCCGCGATAAAGAAGCTCAGGGGCAGGTCGCCCACCCACGAG
GTCCTCTACTCGGACAGAGCGGTCGCCAGAGAGAAGGACCCGGCCGCGGT
GCAGGCGTGCGGGTGGGACGACGGCGACTGCGACGGCCACGACGACGACG
ACGACCGCCATTACGGCGGGTTGCCACCAGCGGTGCTGATCGGCCTGGTA
AAGCAAGCCCTGGAGCCGCACCCGGCCGCCGCGGGGGAAGAGGAGGAGGG
CGAGGAGATGCGGGACGCTCGGGGGAACGTTGTCACCGGCGCGCGGCGGC
GGCTCATGGGGGAAGCGATTCAGGCTGAGCGGGCGAGGGCAGCGGCGGCG
GCGGCAGCGGCGGCGGCGGCAGCGGCGGGCTCGCACGCGGATGAAAAAGA
AGCAGCGTCCCCCGTCAAAGGGAAAAAGAAGAAGAGGGATTTCGTCATGA
AGAGGGCGCGCAGTCCGGACGGGTGCGGCGGCGGCGGCGGCGGCATGGAG
GTAGGGATTGTCGCGAGCGGGCATCCAACGGAGCCCCCGCCAGTGACGCC
AAACCTCGCGTGGCAGCCGTCTCTGCAGGCGGCATAGCATATATTGAGCG
CCTTTTTTGTTGTTGTGTCGAATTCGTTGAGCCGAAAAAGTGCAGACACG
GGAGGGAGGGGCGCCGTGCGCGAAACGGAGGGCAGGCCCAACCCGAATCG
TGTTTGTTTTGTGGGTGTCCGCGAGTGCGCCTTTGAGTGTTTCGCGTGTG
CGGTTTTTGTGCCATGTATCATATATTGACTGTTTCATGTCGATTCCCTA
CCTGACGGTTGTTGGGTGGAGAAAAGAACGAAAAGCTTTTTTTAATCGTG
TTGTCCCTTGGCCCTAGTCCGGGGGGGGGGTATTTGCGTCAGATCTGCCC
TATGGGGTCTTTTTGCTGTAGGAGAAGTTACCGGAGGAAGCCGGTGCCTA
GAGCCCTTGTACCAAGCCCCTGGTTCGGTTGGCTCGATTTTGATATATTT
CGCCATGTATCTGTGTAAAGTAAGGTTGATTTCTGATTTTCGAAAGGACA
GATCGCTGTTGAGTACCGCAAGTATAATGGTGGTGCTCTCCGTAAAAGGT
GAAACACGCCGGCTTTTTCAAGAGTCTCCCTGGACGTTTTTTTTTTAGGG
CTCGTGCTCTATGAGCCCGCGGGGCGTTTTGGGATTTTTACTCCTTGCGC
ACTCCGGCAAAAGGAGAGGATGGGTTCGAAAATATGTCACATCGAGTCTA
TTTCCGTCATCCGATGTGTTGAGGGTGTGGTTTGTATGATACCACGGGAG
AAAAAGACGTGTCGGAGATTCCTTCAAGTTGGCGCGTGAGCCGCGATGTC
GGGTATTTCTCCGGGTCTGGCATCTGTGAAGTGACGTATGATGAATGCCT
CTTCATCACACCTTACATGTCATTACACGAGCGCCTCACGATGTTCGGAA
CTTGGCAAACCCTGCTGCGAAACCGTGGAGGAGACTGGTTGTCGTCGACC
TACTTGTTTTTGGACGATTGATTTTGTGTCGTTCCCAAACCAAATCATGT
TCTGTATGGTCCATGCACAACAATATGTCCAACCACGTGTTTGGGCGATA
ACTTTCGAAGATAGTTCGAACTGTAGTCATGGGAGTGATCCCCACCTTAA
GGCGAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig65:155089..167045+

>mRNA_P-littoralis_Contig65.41.1 ID=mRNA_P-littoralis_Contig65.41.1|Name=mRNA_P-littoralis_Contig65.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1995bp|location=Sequence derived from alignment at P-littoralis_Contig65:155089..167045+ (Pylaiella littoralis U1_48)
ATGCGCCTCAGGAATGCGGCGGTGGTACTCAGCGTCACCGCTACTTCAGC
CCAAGCAGGGAGTGCAGAATGGACCAGACGAAGAGGGGGGGGCGGATCGA
GCAACACCCCGGCGTTTGCGCCAGGAGGAGCTGGAGGAGGAAGAACAGGT
CTCGGGTTGTCAACACAGCAGTCGCAGCTGCAGCAGTTGAAGGCAAATAG
CAATCTACGACGACGTTCTCGACCCAAACCCCAGTACCTGTCGATGCAGC
TCAAAGAACTGTCCCCTTCCCTGGCCAGTGCGAGCGCCGAGGAGTCAGCG
GACTACAAGCGCCGGAGCGTCATCCGTGTGCTCTTCAGGGACAAGAACGC
GACGGAGGTGACGGGGTGGATGAAGACGCTCAAGAACTTGGACGGGCCGG
AGATGCCGTTCGATGAGATGCTAGAGCTCAAGTCGGAGATGGACAGGTCG
ATGAAAGCCAACAAGGAGAGCACGGAGAGGCGAAGCAGGAGATACAAGCA
CTTCGACCTCGGGCGTAACCCGACCCTCCTCACCAAAACGGAAGAGATTG
AGCTCGGGAGAAAGGTGCAAGAGCTTCTACGGTGGGAGCGCGTAAAAGCT
CACCTCGAGCTACGGTTGGGGAGAACAGCGACGATGGAGGAGTGGGCGAT
AGAGCTGGCTGCCATGGACGGGGCCGAGGGAGTGGAGAGGGAAATGAAGG
TCATGAGAGCGGCCAGAACGAGGATGATCTCGTGCAATCTTCGCCTGGTT
TTGCACATCGCTAGGAAGAAGTTTTATATGGGATCGTCAGGCAGCCTTAA
GATTAGTCTGGAGGACATGATCCAAGACGGCACGGCCGGGCTTGTGAAGG
CCGTGGAGAGGTTCGACCCTGAGAAGGGGTTTCGTTTCAGCACGTACGCG
ACGTGGTGGGTGCACCAGGCCATCCACTGCGGCTTCGCGGACTGCGGGAG
AGTGATACGGCTGCCGATGAACCTGCACACGATGGTGTGCAAGGTGATCA
GGCTGCAGACGGCCATGATGGACCAGCTGGGGAGGCAGCCCACCTTGCAG
GAGCTGTCGTTGGAGAGCGGCCTTGAAGAGAAGAAGGTCGTGAAATGCCT
CCGCGTGAACAAGGTGGAGCCTATCTCTCTGGATGTCCGTCCGAAGCGGA
GGGACGGCCATCTCCACTTCGACAAGCCGCGCAAGAACGAGCAGATCGTA
GACACCCTTCGATCTAATCGCGAACCGGAACCTGTCGTCGGCGCGGACGT
GAACCTGCTCAAGACAGACGTCGACACCATCCTCGGCGATTTGTCCGCCA
GAGAGGCCTTCGTCCTCCGGATGCGCTTCGGCATCGGCGGCAACAGCCCC
TCCACCCTCGCCGTGGTGGGGCGACGGCTGCACGTCACCCGCGAGCGCGT
CAGACAGATCCAGCTCGCCGCGATAAAGAAGCTCAGGGGCAGGTCGCCCA
CCCACGAGGTCCTCTACTCGGACAGAGCGGTCGCCAGAGAGAAGGACCCG
GCCGCGGTGCAGGCGTGCGGGTGGGACGACGGCGACTGCGACGGCCACGA
CGACGACGACGACCGCCATTACGGCGGGTTGCCACCAGCGGTGCTGATCG
GCCTGGTAAAGCAAGCCCTGGAGCCGCACCCGGCCGCCGCGGGGGAAGAG
GAGGAGGGCGAGGAGATGCGGGACGCTCGGGGGAACGTTGTCACCGGCGC
GCGGCGGCGGCTCATGGGGGAAGCGATTCAGGCTGAGCGGGCGAGGGCAG
CGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGGCTCGCACGCGGAT
GAAAAAGAAGCAGCGTCCCCCGTCAAAGGGAAAAAGAAGAAGAGGGATTT
CGTCATGAAGAGGGCGCGCAGTCCGGACGGGTGCGGCGGCGGCGGCGGCG
GCATGGAGGTAGGGATTGTCGCGAGCGGGCATCCAACGGAGCCCCCGCCA
GTGACGCCAAACCTCGCGTGGCAGCCGTCTCTGCAGGCGGCATAG
back to top