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Homology
BLAST of mRNA_P-littoralis_Contig65.9.2 vs. uniprot
Match: A0A6H5K7N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N9_9PHAE) HSP 1 Score: 123 bits (309), Expect = 3.480e-30 Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 3
Query: 402 MSAIPTDQDYYGEALPPYAQQAPAEAGHATARCKGCGQQFARKEGVNPASAQFHRCDNCNNRATRDMLCVNATCGASSLCAIQ 650
MSA+P +++Y GEA PPY QQ A G ARCKGCGQQF RK G NPASAQ+HRC+NCN R TRDML VNATCGASSLC+IQ
Sbjct: 1 MSALPVNENYPGEAPPPYYQQQAAVPGQDMARCKGCGQQFVRKPGENPASAQWHRCENCNKRQTRDMLLVNATCGASSLCSIQ 83
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1905 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-10_006350.1 |
| Cds size | 516 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791352.5891798-UTR-P-littoralis_Contig65:26377..26514 | 1680791352.5891798-UTR-P-littoralis_Contig65:26377..26514 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig65 26378..26514 + |
| 1680791352.6582122-UTR-P-littoralis_Contig65:28800..30052 | 1680791352.6582122-UTR-P-littoralis_Contig65:28800..30052 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig65 28801..30052 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791352.6103184-CDS-P-littoralis_Contig65:26514..26709 | 1680791352.6103184-CDS-P-littoralis_Contig65:26514..26709 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 26515..26709 + |
| 1680791352.621681-CDS-P-littoralis_Contig65:26992..27166 | 1680791352.621681-CDS-P-littoralis_Contig65:26992..27166 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 26993..27166 + |
| 1680791352.634913-CDS-P-littoralis_Contig65:27947..27975 | 1680791352.634913-CDS-P-littoralis_Contig65:27947..27975 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 27948..27975 + |
| 1680791352.6461418-CDS-P-littoralis_Contig65:28681..28800 | 1680791352.6461418-CDS-P-littoralis_Contig65:28681..28800 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig65 28682..28800 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.9.2 >prot_P-littoralis_Contig65.9.2 ID=prot_P-littoralis_Contig65.9.2|Name=mRNA_P-littoralis_Contig65.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
MTVFASSRVWRVATHRHFASEVEPPHYGCTLASPAFPFFVSSRAILKENR
PVARRRKGFYAAGAQIQREYHRFSTQLAGLDKVYTECAMSAIPTDQDYYG
EALPPYAQQAPAEAGHATARCKGCGQQFARKEGVNPASAQFHRCDNCNNR
ATRDMLCVNATCGASSLCAIQ* back to topmRNA from alignment at P-littoralis_Contig65:26378..30052+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig65.9.2 ID=mRNA_P-littoralis_Contig65.9.2|Name=mRNA_P-littoralis_Contig65.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3675bp|location=Sequence derived from alignment at P-littoralis_Contig65:26378..30052+ (Pylaiella littoralis U1_48)
CGAACACATCTAGACTATACGAAGTATTTTCGAAGTTCATCGGTCAGGAG
AAAGAGGGTGAACAAGGAACGGTCCCCGAAAAAAGACTTTTGACTCTCGA
CCAATCATCAGTTGCACCCGCAGGCGTTCTTGTGGAGATGACAGTCTTCG
CGTCTTCCCGTGTCTGGCGAGTCGCTACTCACAGACATTTCGCTAGCGAG
GTTGAACCGCCGCATTACGGGTGCACGCTCGCCTCCCCTGCGTTCCCCTT
CTTCGTCAGCTCACGTGCCATTTTGAAAGAAAATCGACCAGTGGCCAGAA
GACGTAAAGGTTTCTACGCTGCTGGCGCTCAGGTGGGATTGATAATTATT
CTGCATAGGACGATGCAGCAGCTGCTGCTCTCTGGAGATATTGTGTACCA
GGTAGTGCTGTATGCTTCCGTCCTCTTCTCCTCCTGCAGTACTGCTGTAC
TGCTTCACGGGAGGGCGCGTTGCTGGTGCCGGCGTGCCGGTTCGGCACGG
CTGTTACTGATACAAGGTGGTTTTTTCGGTCAGATCGCGAGATCATCTGT
ATGTTGTCCTAAATAATGTCTCGGGTACGTTTGTCGCTCGTCTGCTAATA
TGTTTATTCTTGCAGATTCAGAGGGAGTATCACAGGTTCAGCACACAACT
AGCAGGCCTGGACAAGGTCTACACAGAGTGTGCCATGAGTGCCATTCCCA
CAGACCAGGACTACTATGGCGAAGCCTTGCCGCCCTACGCCCAGCAGGCT
CCAGCAGAAGCGGGACATGCCACGGCCCGCTGCAAGGGGGTGAGTCTGAG
AAATCTATACTGCTGAGTACAACAGACAGCTGAATTTCGAATTTCATTTG
CTGCTGCAAGCACCACCAGAGGTGCACGTCTTATCAACTCTACATTGATA
CCAACAGGTTTCGAGAACAAGTGCAGGCTCCCTCAGAAAACACTGATCGA
GAAAGCATATCAGTGATCAACGTGTGAATAGGAAAGAAAGGGAGAGAGGA
TGTCGAGTTCCGTAGCACCACCATGGGATTGTTGCAGTGCTTCTGTCCTG
TACACTGATTTACAGTGCCGGTTGGAAGCGCGCGGTATCGTGGAAACTTG
AGTTACTGTTGGAAGCGTAGGATATCGGCTGTATTCAAACACATCTCGCA
AGCGCCATTGGTTATCTTGTGCCACCTGAATGTACGCGTTATGGTCGACG
CGTTATGTGGCTCCGAAAACAACCTTGGAGGCACGACAAATGGGCAGCGG
CAGAGAGAAGGCCAATATGCAGGCTTGCTACCGTGCCATCAAGGCGACTC
TGTAAAGTCCACTGCAAATGGTTGGGTATCGTTTTGAGTGGAAGGTGGGA
AGCCTCTGTTCGCAATTGATTTGATGGATGATTGTACCTTCGCGTATACT
TTGAATGGTTGTCGCATTTCCTTCCCCTTGACCATCCCGCCTCCCTGCGC
GCCCTCTCTTGGTGCGTTCGTTCCTGCGCGTACCGTGCCTGCACGACCCA
TTCGTGATCTTGTAATGGATGTGGCGACACGCTTTCACTATGCTCTACCC
ATCCCGTCTGGTACGTGCAGTGCGGGCAGCAATTCGCACGCAAGGAAGGC
GAGTTTTCATATGTCACAGCTGAAGTTGGCAATGTTTACGTCGCTTACGG
CATGAACCAGTAGAAAAACACCCCCAGTGATGTGTAGCGCCCTCGGTGAT
GCTTTTGTAAGCTTGAAGTACAGTTTACTGAGAATCAATAGTTTCCTCAA
ATGGAATAGTCGGGGCCACCTCCCTCCCCCACCTCCCTCCCCTAATTATT
GTTCACCGCCCCTTAGGATGACTACCCGAAACCGTATCCTACCGCTGTTG
CGAATCGCGGCTGCAATCTTTGGTATGCCGTTTCCTTTCAAACGTTGATA
TCTACCTTGGGTGACCTTACCAAACGACACACCAAACCTCACAAATTTGG
CTTCAGGCTCTCCACAATGAATCGAAGGGTCGATGTCAATCTGGGCGCCG
TTGAACATGCACTGCCACGAGGTTTCGGAAAACCTATCGCTTCAAAGCAA
AGCATAAATAACATTCTTACCAACCGGTGCAATGTACTACAGTACCTTCA
CGGAAGGCGTGTCCTCCTTACAAAAATACGTGGTATCCGTTCATTCGAAT
TATCTTGCCGAGTATTTTTTTCGCGTTTCGTCCAGTTTTCGGCAGATAAA
CCTGTCTACAGCGGATGCGTCCTTGTAATCCGTTGAAACCCTTTTGATCT
ATGTTGTTATTTGCCCGCCTCTGAATTGGTGGCCGTTTTTCCATCCCTCC
GAAGGCGTTAACCCGGCGTCTGCCCAATTCCACCGCTGTGACAACTGCAA
CAATCGAGCAACACGAGATATGCTCTGCGTCAACGCCACCTGCGGAGCTT
CTTCCCTCTGCGCTATTCAATGAAGGGGTTCAGCGCGTTTTGTGCTGCTC
ATCATTTTCAGGAAATTTGGCGACACGGCGGTGGTAGCTTCGCGAAAGAG
GCCGTATCACCAGTTCTATGCCCATGTATGGCACTTTGAGCATGAAAATA
GACATAAAATGTTCTGGTGCTGCGCGTTTTGGGAGTCAGGCCGAATGTGT
GCATGTTGAGTTCATTTTTGTCGTAGACCTGAAGGTGCGAGTTGTAGTCA
TGGGTGGTAAATTCAAGGGCTAAGCGCGCGGATGGTAAATAGATTGTACA
GCAGTAGTACCATCGGTCGAATAGTGTGTACATATCCCACATTTGTTACC
AGTATAATCGACTCCCACTCCGAATACAGAGACGCCTGCAATAGCTGCGT
GTTGGAAAGAAGTCTTGGGTCGCCCGCTGGCACGGCGACTCAAAGAAAAA
CCCGCCCCAAATTAAGCTTCCCACGCTTTCCGTGGTTCAGTGCGCTGTAT
GCGCGTGTCGTAGTCCCTGGTCTTGAAGGGAGGAAGAAGTAATATTCGAG
AAGGCCGCCGCCTTCCTACGGCACTCATGTGGATTATTCGAAGTTCAAAC
ATGTTGAATATTCTCCGCGATGCTGCCTGTCGTCGCGCCCAGCGTGTCAG
ATGTGCGGCTGGATGGATGTGACATTAGTGTCGGGGTTTGACCCCTTCTT
GGTCTCGATCCTGGCCTGCGGTGTACTGCAACGCTCGCTTTCCGTGCTGA
CTTGATCCGGCACTTCTGTTATTGGGATCATTTGATTGTTTTGTGATTTC
TGTCGGATTGGTGTAACATAAGGGAAATGGGTTCGTGCAGAAGTGGGTGA
AGTAGCGCAATTTGATGGTCGACTGAAACGTAAGAGAAGGAAAACAGCAA
AAGCTGGTTCGGCGTGTATGTGGTATTCGGCGTAAGATCTAGTATATTAT
GGTGTGAAACTCCAAGGACCGATGCTGCTGCCCTCACGCCACAACGGTCC
TTATCCTGTGGTTACACCGACTAGTCTCAACCCGTTCAATTCAATCCCAG
GGGCTGCCCATCTCAGGCAAGGCTCTCCTGGTAGGACAAGCCCGGCAGCA
ACAGTTCTAAATCAAAGCTACCGTAACTTGGCGCACTCCGCCAAAGTCGA
TACCTGACTGCTGCACGTACCTCGAATTTAAAATTTGTTGAAATTGTGAG
CTCTTTCGAGGTTTTCATTTATGTTTGGAGTTTTGCAGAAAGCTGGAGGA
GCTTTCTGTCAACACCAACAGGAAG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig65:26378..30052+ >mRNA_P-littoralis_Contig65.9.2 ID=mRNA_P-littoralis_Contig65.9.2|Name=mRNA_P-littoralis_Contig65.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig65:26378..30052+ (Pylaiella littoralis U1_48)
ATGACAGTCTTCGCGTCTTCCCGTGTCTGGCGAGTCGCTACTCACAGACA
TTTCGCTAGCGAGGTTGAACCGCCGCATTACGGGTGCACGCTCGCCTCCC
CTGCGTTCCCCTTCTTCGTCAGCTCACGTGCCATTTTGAAAGAAAATCGA
CCAGTGGCCAGAAGACGTAAAGGTTTCTACGCTGCTGGCGCTCAGATTCA
GAGGGAGTATCACAGGTTCAGCACACAACTAGCAGGCCTGGACAAGGTCT
ACACAGAGTGTGCCATGAGTGCCATTCCCACAGACCAGGACTACTATGGC
GAAGCCTTGCCGCCCTACGCCCAGCAGGCTCCAGCAGAAGCGGGACATGC
CACGGCCCGCTGCAAGGGGTGCGGGCAGCAATTCGCACGCAAGGAAGGCG
TTAACCCGGCGTCTGCCCAATTCCACCGCTGTGACAACTGCAACAATCGA
GCAACACGAGATATGCTCTGCGTCAACGCCACCTGCGGAGCTTCTTCCCT
CTGCGCTATTCAATGA back to top
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