mRNA_P-littoralis_Contig65.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.8.1
Unique NamemRNA_P-littoralis_Contig65.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.100e-27
Identity = 87/171 (50.88%), Postives = 106/171 (61.99%), Query Frame = 2 
Query:  545 INVVNKLHETPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKDSSSG------GSSAKVAK-AGCNLRRGCDETGGQA-VGIAHLVGRVVGLEVEGVFRLVVGFL 1033
            IN      +TPLH  C     + V+LLLRWGADE   + +GD  AD VG  EQ +D+D+ E     R+ D+Q I  ML RAPADRSWR RGWL L RS PTRV ++   SSS       G+SAKVA+ +G    R  +ET  Q  V +  LVGR+VGLE EG+FRLVVGFL
Sbjct:  347 INARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQ-NDLDDEE-----READNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.390e-26
Identity = 79/160 (49.38%), Postives = 99/160 (61.88%), Query Frame = 2 
Query:  569 ETPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKDSSSG---GSSAKVAK-AGCNLRRGCDETGGQAVG-IAHLVGRVVGLEVEGVFRLVVGFL 1033
            +TPLH  C  + V+GV+LLLRWGADE   +  GD  AD + A +Q D  DE  D+      D+Q I  ML RAPADRSWR RGWL L R  PTRVQ+    SS G   G+SAKVA  +G +  RG +ET  + +  +  LV  +VGLE + +FRLVV FL
Sbjct:  117 QTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDA------DNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSRGSYNGNSAKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEADSLFRLVVAFL 270
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.770e-26
Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 2 
Query:  572 TPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKDSSSGGSS--AKVAK-AGCNLRRGCDETGGQ-AVGIAHLVGRVVGLEVEGVFRLVVGFL 1033
            TPLH  C  S VA V+LLLRWGADE+  ++NGD  AD +G +      D G+ +++  K D + IR ML RAPADRSWR RGWL L RS PTRVQ++ K S    +S  AKVA+ +G +L    +E   Q  V    LVG ++GLE +G+FRLVVGFL
Sbjct:  353 TPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVY------DRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGSRVNRNSCPAKVARVSGEDLGGDEEEAENQMTVDWGGLVGSLLGLEADGLFRLVVGFL 504
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.810e-26
Identity = 92/200 (46.00%), Postives = 116/200 (58.00%), Query Frame = 2 
Query:  473 CTSVPPIAEQHRVARCLPYGR--EGL--INVVNKLHETPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKDSS------SGGSSAKVAKAGCNLRRGC-DETGGQAVGI--AHLVGRVVGLEVEGVFRLVVGFL 1033
            C++   +A   RVA     G   EG   I+V +++ +TPLH  C  S V GV+LLLR GADE   +E GD  AD VGA      VDE  +       D+Q IR ML RAPADRSWR RG L L RS PTRVQ++ + SS      S G  AKV+ A      G  +ETG Q V +   +LV R++ LEV+G+FRLVVGF+
Sbjct:  186 CSTPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEV------DNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSGSSIGSSKGCFAKVSPASRKNSGGDNEETGDQMVMVDWRYLVCRLIELEVDGLFRLVVGFV 379
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.500e-25
Identity = 75/157 (47.77%), Postives = 95/157 (60.51%), Query Frame = 2 
Query:  572 TPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAW--EQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQL--SAKDSSSGGSSAKVAKAGCNLRRGC-DETGGQA-VGIAHLVGRVVGLEVEGVFRLVV 1024
            TPLH  C  S  A V LLLRWGAD++ +D  G+ AAD VG W  E   + D+G   +   K D Q  R +L  AP DR WR RGWL LCRSYPT+VQ+   +  SSSG S+AK A+        C DE G +A + +  LVG +VGL+ + VFR+VV
Sbjct:  406 TPLHYACYKSNAAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRSYPTKVQILKDSSSSSSGCSTAKAARVSEEDSGECGDEDGDEARIELGRLVGHIVGLQADVVFRMVV 562
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.210e-24
Identity = 81/174 (46.55%), Postives = 100/174 (57.47%), Query Frame = 2 
Query:  545 INVVNKLHETPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKD---------SSSGGSSAKVAK-AGCNLRRGCDETGGQA-VGIAHLVGRVVGLEVEGVFRLVVGFL 1033
            +NV +    TPLHE C  S VA V+LLLRWGADE   D+     AD +G    V     G D       D Q I  ML RAPADRSWR R WL L RS PTRV+++ ++         SSS G+S K+A+ +G +   G  ET  Q  V +  LV R+VGLE +G+FRLVVGFL
Sbjct:  346 VNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDV-----GSDHGDIEA-DGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFL 513
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.600e-23
Identity = 79/167 (47.31%), Postives = 97/167 (58.08%), Query Frame = 2 
Query:  569 ETPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKDSSS----------GGSSAKVAK-AGCNLRRGCDETGGQA-VGIAHLVGRVVGLEVEGVFRLVVGFL 1033
            +TPLH  C  S   GV+LLLRWGAD+      G   A  V A +Q DD+D+ E      + D+Q IR ML R PA RSWR RGWL L RS PTRVQ++   S             G+SAKVAK +G +  R  +ET     V +  LVGR++ LE +GVFRLVVGFL
Sbjct:  316 QTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQ-DDLDDEE-----LEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNGNSAKVAKVSGESSSRDDEETADDMMVDLRDLVGRLIALEADGVFRLVVGFL 476
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.280e-21
Identity = 78/179 (43.58%), Postives = 96/179 (53.63%), Query Frame = 2 
Query:  545 INVVNKLHETPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKND-----DQH-IRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKDSSSG--------GSSAKVAKAGCNLRRGCD-ETGGQ-AVGIAHLVGRVVGLEVEGVFRLVVGFL 1033
            +N  +   +TPLH  C  S V GV+ LL WGADE   D +G+  A  +   E+    D  +   ++R  D     DQH IR ML RAPADRSW  R WL L RS PT+VQ+S   SSS         G SA++    C    G D ET  Q  V    LV R+VGLE + +FRLVVGFL
Sbjct:   89 VNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNISSGSSGDGLSAEMVSVNCKDLGGDDKETEDQKTVNWRDLVVRLVGLEADVLFRLVVGFL 267
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.570e-20
Identity = 72/164 (43.90%), Postives = 93/164 (56.71%), Query Frame = 2 
Query:  575 PLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAKDSSS-------------GGSSAKVAK-AGCNLRRGCDET-GGQAVGIAHLVGRVVGLEVEGVFRLV 1021
            PLH  C  S V GV+LLLRWGADE   +  G   AD + A +Q      G+  +K R+ DDQ I  M+   PADRSWR RGWL L RS PTRVQ++   S                G++AKVA+ +G +  R  + T G   V + +LVGR+VGLE +G+ RLV
Sbjct:  318 PLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQ------GDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXXRINGNAAKVARVSGESSSRDDERTEGDMIVDLRNLVGRLVGLEADGLLRLV 475
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BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.020e-20
Identity = 71/159 (44.65%), Postives = 94/159 (59.12%), Query Frame = 2 
Query:  566 HETPLHETCGCSCVAGVKLLLRWGADESKLDENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSWRHRGWLALCRSYPTRVQLSAK--DSSSGGSSAKVAKAGCNLRRGCDETGGQA-VGIAHLVGRVVGLEVEGVFRLVVGFL 1033
            ++TPLH  C  S  A VKLLL WGAD +  + NG   AD + A ++     +G D ++H + D +H+R ML RAPAD+SWR  GWL L RS PTRVQ+  +    SS   S K+A+         DE   Q  V    L+ R+VGLE +G+FRL+VGFL
Sbjct:  322 NDTPLHVACTYSNAAVVKLLLCWGADGTCSNGNGHVPADVIRAHDE-----DGLD-DEHIEADHKHVRRMLARAPADKSWRRHGWLVLSRSGPTRVQIGNRGGSGSSNSCSTKLARVSGKDSSRDDELENQMMVDWRVLLDRLVGLEADGLFRLMVGFL 474
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN0_ECTSI1.100e-2750.88Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5JXF0_9PHAE1.390e-2649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI1.770e-2650.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTL5_ECTSI2.810e-2646.00MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D7G692_ECTSI6.500e-2547.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD22_ECTSI6.210e-2446.55MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5L812_9PHAE2.600e-2347.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6K9_9PHAE1.280e-2143.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7E1_9PHAE2.570e-2043.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE3.020e-2044.65Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:23470..24685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQN0
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Motile_Sperm
Model size1036
Max annot lvl2759|Eukaryota
KEGG koko:K21440
Hectar predicted targeting categorymitochondrion
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons2
Evalue3.55e-29
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size831
COG categoryI
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791352.5259936-CDS-P-littoralis_Contig65:23469..240871680791352.5259936-CDS-P-littoralis_Contig65:23469..24087Pylaiella littoralis U1_48CDSP-littoralis_Contig65 23470..24087 -
1680791352.5464542-CDS-P-littoralis_Contig65:24267..244801680791352.5464542-CDS-P-littoralis_Contig65:24267..24480Pylaiella littoralis U1_48CDSP-littoralis_Contig65 24268..24480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791352.5574121-UTR-P-littoralis_Contig65:24480..246851680791352.5574121-UTR-P-littoralis_Contig65:24480..24685Pylaiella littoralis U1_48UTRP-littoralis_Contig65 24481..24685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.8.1prot_P-littoralis_Contig65.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 23470..24480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.8.1

>prot_P-littoralis_Contig65.8.1 ID=prot_P-littoralis_Contig65.8.1|Name=mRNA_P-littoralis_Contig65.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
MTPRPGGWTAHLSILLRRRAMRCVCPIFWWEVQTRDRLTASTKRHFTSQP
TATSSARSKSFWLLVPSSILFLGLTSERRRLTKLMAIHRCTSVPPIAEQH
RVARCLPYGREGLINVVNKLHETPLHETCGCSCVAGVKLLLRWGADESKL
DENGDKAADWVGAWEQVDDVDEGEDSNKHRKNDDQHIRHMLKRAPADRSW
RHRGWLALCRSYPTRVQLSAKDSSSGGSSAKVAKAGCNLRRGCDETGGQA
VGIAHLVGRVVGLEVEGVFRLVVGFL*
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mRNA from alignment at P-littoralis_Contig65:23470..24685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.8.1 ID=mRNA_P-littoralis_Contig65.8.1|Name=mRNA_P-littoralis_Contig65.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1216bp|location=Sequence derived from alignment at P-littoralis_Contig65:23470..24685- (Pylaiella littoralis U1_48)
GACCTGGACGTCAAGCTCGGGGCGAAACGCGAGTCTGCGCTGCATGTGGC
AGCGGTAAGGGGTGCAGAAGCCGCGGCTGGGGTGCTTTTGCTTGCTGCAG
CAGACCCTAACTTGCGAGATCGGACAGGGTGCAGTCCGCTCCACGTTGCA
GCTGAAGCAGGGCATCATGTGATCGTGAAGGAACTGCTGCTGAGGCGCGC
TCGCCATGACGCCAAGACCCGGCGGATGGACCGCACACCTCTCCATCTTG
CTGCGAAGGAGGGCCATGCGCTGTGTGTGTCCAATCTTTTGGTGGGAGGT
GCAGACAAGGGATCGCTTGACTGCGTCAACAAAACGCCACTTTACCTCGC
AGCCGACGGCAACAAGCTCTGCGCGGTCGAAGAGCTTTTGGCTCCTGGTG
CCATCGTCAATACTATTCGTGATGGCGAGGAATGGTCTGCATTGGAAGTT
GCTACCGACAACGGCCACGAGGACGTTGTGAGAGCACTTCTGCGGCACGG
ATGTGACAGCCAAGCCTGCAATAGGAAAGGGCGTACAGCTCTATATTTTG
CCGCCCAAGTATGCGACAACCGCGGAGTCGTCTGTGCGTTGCTTGAAGCT
GGGGCTGACATCGGAGCGAAGACGACTGACGAAACTGATGGCAATACACC
GCTGCACTTCTGTGCCGCCGATTGCGGAACAGCATCGAGTGGCACGATGT
TTACCCTATGGGAGGGAGGGGCTGATCAATGTCGTCAACAAATTGCATGA
GACGCCGCTTCACGAAACTTGCGGCTGTTCCTGTGTGGCTGGTGTAAAGC
TTCTGCTGCGATGGGGAGCAGACGAGTCGAAACTTGACGAAAATGGAGAC
AAGGCGGCAGACTGGGTGGGAGCCTGGGAACAAGTCGACGATGTTGACGA
GGGCGAAGATAGCAATAAACATCGAAAGAACGACGATCAGCACATTCGCC
ACATGTTGAAACGCGCCCCAGCCGACAGATCCTGGCGTCACCGCGGCTGG
CTGGCGCTGTGCCGTTCCTACCCGACCAGGGTGCAGCTTTCGGCGAAGGA
TAGTAGTAGTGGTGGCAGCTCCGCCAAGGTGGCAAAGGCTGGCTGCAATT
TGAGGAGGGGGTGCGACGAGACTGGTGGCCAGGCAGTTGGCATTGCACAT
TTGGTTGGAAGAGTGGTTGGCCTGGAGGTTGAAGGCGTTTTCCGCTTGGT
GGTGGGATTCCTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:23470..24685-

>mRNA_P-littoralis_Contig65.8.1 ID=mRNA_P-littoralis_Contig65.8.1|Name=mRNA_P-littoralis_Contig65.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig65:23470..24685- (Pylaiella littoralis U1_48)
ATGACGCCAAGACCCGGCGGATGGACCGCACACCTCTCCATCTTGCTGCG
AAGGAGGGCCATGCGCTGTGTGTGTCCAATCTTTTGGTGGGAGGTGCAGA
CAAGGGATCGCTTGACTGCGTCAACAAAACGCCACTTTACCTCGCAGCCG
ACGGCAACAAGCTCTGCGCGGTCGAAGAGCTTTTGGCTCCTGGTGCCATC
GTCAATACTATTCCTGGGGCTGACATCGGAGCGAAGACGACTGACGAAAC
TGATGGCAATACACCGCTGCACTTCTGTGCCGCCGATTGCGGAACAGCAT
CGAGTGGCACGATGTTTACCCTATGGGAGGGAGGGGCTGATCAATGTCGT
CAACAAATTGCATGAGACGCCGCTTCACGAAACTTGCGGCTGTTCCTGTG
TGGCTGGTGTAAAGCTTCTGCTGCGATGGGGAGCAGACGAGTCGAAACTT
GACGAAAATGGAGACAAGGCGGCAGACTGGGTGGGAGCCTGGGAACAAGT
CGACGATGTTGACGAGGGCGAAGATAGCAATAAACATCGAAAGAACGACG
ATCAGCACATTCGCCACATGTTGAAACGCGCCCCAGCCGACAGATCCTGG
CGTCACCGCGGCTGGCTGGCGCTGTGCCGTTCCTACCCGACCAGGGTGCA
GCTTTCGGCGAAGGATAGTAGTAGTGGTGGCAGCTCCGCCAAGGTGGCAA
AGGCTGGCTGCAATTTGAGGAGGGGGTGCGACGAGACTGGTGGCCAGGCA
GTTGGCATTGCACATTTGGTTGGAAGAGTGGTTGGCCTGGAGGTTGAAGG
CGTTTTCCGCTTGGTGGTGGGATTCCTGTGA
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