mRNA_P-littoralis_Contig65.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.36.1
Unique NamemRNA_P-littoralis_Contig65.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.490e-8
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 KRCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGMIDIRS 117
            KRCGH GCTK PS+G  GSK+AEFCC HAK+ M+ + S
Sbjct:    7 KRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMVIVHS 44
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BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.260e-8
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 SKRCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGMI 105
            SKRCGH GCTK PSYG +GSKKAE C QHA +GM+
Sbjct:    6 SKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.830e-6
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    7 RCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGMIDIRS 117
            +CGH  CTK P+YGV GSKK EFC QHA++GM+++ +
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNN 39
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BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: D7FSL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL7_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 8.900e-6
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 SKRCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGM 102
            SKRCGH GCTK PS+G  GSK+ EFC QHAK+ M
Sbjct:    6 SKRCGHPGCTKRPSFGTTGSKRPEFCSQHAKQDM 39
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BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.280e-5
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 SKRCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGM 102
            ++RC H GCTK PS+G +GSKK EFC QHA +GM
Sbjct:    6 NRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
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BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.660e-5
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    7 RCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGMIDIRS 117
            +CGH  CTK P+YGV GSKK EFC QHA++GM+++ +
Sbjct:   63 QCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNN 99
[Close]
BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.180e-5
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    4 KRCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGMI 105
            +RC H  C KHP+YGV G++KAEFC  HA +GM+
Sbjct:   15 RRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMV 48
[Close]
BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.020e-5
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 CGHGGCTKHPSYGVEGSKKAEFCCQHAKEGMIDIRS 117
            C   GCTK PSYG  GSKK EFC QHAK+GM+++RS
Sbjct:  109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRS 144
[Close]
BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Match: D7FUJ4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ4_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 8.440e-5
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    4 KRCGHGGCTKHPSYGVEGSKKAEFCCQHAKEGMI 105
            KRC H  CTK+PSYG +GSKK EFC QHA + M+
Sbjct:    7 KRCSHPECTKNPSYGKDGSKKVEFCVQHAHQDMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JW94_9PHAE3.490e-865.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUJ6_ECTSI5.260e-874.29EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FI73_ECTSI6.830e-659.46EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FSL7_ECTSI8.900e-670.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMB1_ECTSI1.280e-564.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE1.660e-559.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBM3_9PHAE2.180e-558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIE1_ECTSI4.020e-566.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FUJ4_ECTSI8.440e-564.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:129271..132286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G985
Model size1538
Max annot lvl2880.D7G985|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.15e-06
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1236
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791352.1244562-UTR-P-littoralis_Contig65:129270..1293691680791352.1244562-UTR-P-littoralis_Contig65:129270..129369Pylaiella littoralis U1_48UTRP-littoralis_Contig65 129271..129369 +
1680791352.1478217-UTR-P-littoralis_Contig65:130605..1306191680791352.1478217-UTR-P-littoralis_Contig65:130605..130619Pylaiella littoralis U1_48UTRP-littoralis_Contig65 130606..130619 +
1680791352.1596024-UTR-P-littoralis_Contig65:132097..1322861680791352.1596024-UTR-P-littoralis_Contig65:132097..132286Pylaiella littoralis U1_48UTRP-littoralis_Contig65 132098..132286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791352.1364272-CDS-P-littoralis_Contig65:129369..1306051680791352.1364272-CDS-P-littoralis_Contig65:129369..130605Pylaiella littoralis U1_48CDSP-littoralis_Contig65 129370..130605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.36.1prot_P-littoralis_Contig65.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 129370..130605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.36.1

>prot_P-littoralis_Contig65.36.1 ID=prot_P-littoralis_Contig65.36.1|Name=mRNA_P-littoralis_Contig65.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=412bp
MIDIRSKRCGHEGCPKQSRYGVEGSKNTEFCRQHAKEGMMDIRIKRCGHE
GCAKTSLYGTRGSKKAEFCCQHAKDGMIDVRHKRCKREGCTKQPRYGVKG
SKKVEFCSQHAKDGMMDVHSTRCVHEGCTKRSSYGVRGSKKADFCSQHAK
DGMIDVRSKRCGHEGCTKQSRYGVEGSKKAEFCSQHAKDGMMNNHIKRCG
HEGCAKMSSYGMRGSKKAEFCCQHAKDGMIDIRHKRCEHEGCTKQPRYGV
EGSKKAEFCSQHANGGMIDVYRKRCGHEGCTMQPSYGVAGSKKAELCSQH
SMGGMTNTKSRRPCTGSAANGRRGRRDKHAVSETRRGDAGQRRTKRLRPS
TVASSGETTGSSKRACWTRGASAVSAPVKEEAVDNVMAGRVYPWSRDILW
QRRQSCPERTR*
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mRNA from alignment at P-littoralis_Contig65:129271..132286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.36.1 ID=mRNA_P-littoralis_Contig65.36.1|Name=mRNA_P-littoralis_Contig65.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3016bp|location=Sequence derived from alignment at P-littoralis_Contig65:129271..132286+ (Pylaiella littoralis U1_48)
AGCAAGAGGTGTGGACACGGTGGGTGCACCAAGCATCCTTCATACGGTGT
GGAGGGCAGCAAAAAGGCCGAGTTCTGTTGTCAGCATGCCAAGGAGGGAA
TGATCGACATCCGCAGCAAGAGGTGTGGACATGAAGGGTGCCCCAAGCAA
TCGAGGTACGGTGTGGAGGGGAGCAAAAATACCGAATTCTGTCGTCAGCA
TGCCAAGGAGGGTATGATGGATATCCGCATCAAGAGGTGTGGACACGAAG
GGTGCGCCAAGACGTCTTTATACGGCACGAGGGGGAGCAAAAAGGCCGAG
TTCTGTTGTCAGCATGCCAAGGATGGAATGATCGACGTCCGCCACAAGAG
GTGCAAACGTGAAGGGTGCACCAAGCAACCGAGGTACGGTGTGAAGGGGA
GCAAAAAGGTCGAGTTCTGCTCTCAGCATGCCAAGGATGGAATGATGGAT
GTCCACAGCACGAGGTGCGTACACGAAGGGTGCACCAAAAGGTCTTCATA
CGGCGTGAGGGGGAGCAAAAAGGCCGATTTCTGTTCTCAGCATGCCAAGG
ATGGAATGATCGACGTCCGCAGCAAGAGGTGTGGACACGAAGGGTGCACC
AAGCAATCGAGGTACGGTGTGGAGGGCAGCAAAAAGGCCGAATTCTGTTC
TCAGCATGCCAAGGATGGAATGATGAATAACCACATCAAGAGGTGCGGAC
ACGAAGGGTGCGCCAAGATGTCTTCATACGGCATGAGGGGGAGCAAAAAG
GCCGAGTTCTGTTGTCAGCATGCCAAGGACGGAATGATTGACATTCGCCA
CAAGAGGTGTGAACACGAAGGGTGCACCAAGCAACCGAGGTACGGTGTGG
AGGGGAGCAAAAAAGCCGAGTTCTGCTCTCAGCATGCCAATGGTGGAATG
ATCGACGTCTACCGCAAGAGGTGCGGACACGAAGGGTGCACCATGCAGCC
GTCGTACGGTGTGGCGGGGAGCAAGAAGGCCGAGTTGTGCTCTCAGCATT
CCATGGGGGGTATGACAAATACGAAATCGCGCCGGCCTTGCACCGGTAGT
GCGGCAAACGGCCGACGAGGGCGTCGTGATAAACATGCGGTCTCCGAAAC
GCGCCGTGGTGACGCAGGTCAGCGTCGGACTAAGCGCCTTCGTCCTTCTA
CGGTGGCTTCGTCTGGGGAGACCACGGGGAGTAGTAAACGAGCCTGCTGG
ACTCGGGGCGCGTCTGCGGTTTCCGCGCCGGTCAAGGAGGAGGCAGTAGA
CAACGTGATGGCGGGTAGAGTTTATCCTTGGAGCCGTGATATTTTGTGGC
AAAGGCGGCAGTCTTGTCCTGAGAGGACACGTTGAAGAAGCAGCAAGAGG
TGCGGTGAAAACGTACCCCAGTCCGTGTCGTATTTCGTGCGGACGGTGGT
CCTGGGCTTGAAGTAAAGCAGCATATATTATGTGTGCGCGGGTGCTGCCA
AACGATCCGAGTCTCCAGATGGCTGTCCGATGACGCAAGTGATCTAGGAT
GTCACCAGGGCGTCGTGTAAGGAATGGTACTGGGATGTGGTGATATGGAA
ATGTCTTTTTCTTGCCAAACATCTCAATGCGACCACTTTGGTTTGCCCAC
TTTTTTGCATCCCACCCCCGTTCTATACTTCCCGCCGCCAATATTTTTCG
TCCGAATTCGCTGCAATTGTTCCTGACATACCCGGGACCCACACTACCAT
CCCAAACATGTCCTGAGGTCGCTCTGGATCGTCGTTTACTGCAACCCGTC
GCTCCTCGCTCGTGCCACACAATTTGGGAGACCCCATCTAGACCGTGGAG
GGTTCCCCACATCCTCCGGCTCGAGTACCTCGTGAATGGAGTGTTGTAGG
AGCGATTTCAACACTCGGAGACACGGGCGTGCCAGACCCATCCCACGATG
GAGGAGGGAACCCCGATTGCAACCTGCTTGGCCGAACGGGTACCTTTAAT
TGCCCATAACTCTTTCGTATTTTATTTTCAGAAAGAGTGGTTTCTGACAG
GCAGCGCGCTGCACGTGTGTCTGAGAGTGTCAAACAAACGTTAGTGGAGT
AAAAATAAAAGAGTTTTGAAAAAAGTTAGGTAGTCGCTCGGCCGAGCAGG
TTGCTGTCCAGGGTCCAAAAAGTGAGCCCCCTATCGTGGGATGGGTCGCC
ACGCAACAGCGCATGTATCAGAAAAGATATTCCACGTGTTGTCAGCGCGG
TACCTTGGTCGGCCGTTTAATGTGCCGTGATTTGAGATGCTGGAAATGTC
GGTCTACGACAGATACTGTGACAGAGCTTCCGAGCCGTCCTTAGCTCATC
CCGCGCCTTCACGTCAACGCGCGGTTGTAGCTCTGAAGAATGAGCGCTCT
GCCTGCTGTACGCAGAGAGAGGGGAGGGATCAATCAGAAGCCCTCTCATG
ACCCAGCGTGTGCGTTCCTGGTGATCATATTCGTTCTCCCCGCCCTCAAG
TTTGGAATATTTCACAGCTCAAATTGCATTATTCGACGGTGCGTTAACCT
TTTTTGTTTAAGCAGATAGTCCATGAATGATTTCTTTGGTCAATCTAAAC
AAGTTATTTTTCATAGTATGGCATTCGAGATCCGGGGTCCAGAACAACCC
TTTTACATCGCTCGGCTAGAACTTGTCGGAACTTGAGTGAGGCCGGTTTT
AACACGTTCGGATGGGCCATTTCAAACTGTTTTTTATTCAAAAAGCAACC
GTCACCGGCGAAAAATTATTTCTGAAAATTTGTTTCTGCAGATGGTCACT
TCATCATACATAGCTCCGCGTTTCCTTCGTGCCGTTCGACCTTTCAATTC
GTATCCTTTGGTCATTCCTCCTCACAGGTTGGTCAGATGAACCATAGCCT
GAGCGATAAGGAAGGCGTGCAGCTTTTGAAGAAAAGCGCAGCGAAGGCAC
ACAACGTTGATAGGGCGGTAGCTTCGAGGTTAAAAATGTCTACACGAAAT
ATGCGGCCACGAAAAGCGGTACACACCACAGAGTCTGGCCTTGACTACAT
GAAACTGTGGCAGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:129271..132286+

>mRNA_P-littoralis_Contig65.36.1 ID=mRNA_P-littoralis_Contig65.36.1|Name=mRNA_P-littoralis_Contig65.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1236bp|location=Sequence derived from alignment at P-littoralis_Contig65:129271..132286+ (Pylaiella littoralis U1_48)
ATGATCGACATCCGCAGCAAGAGGTGTGGACATGAAGGGTGCCCCAAGCA
ATCGAGGTACGGTGTGGAGGGGAGCAAAAATACCGAATTCTGTCGTCAGC
ATGCCAAGGAGGGTATGATGGATATCCGCATCAAGAGGTGTGGACACGAA
GGGTGCGCCAAGACGTCTTTATACGGCACGAGGGGGAGCAAAAAGGCCGA
GTTCTGTTGTCAGCATGCCAAGGATGGAATGATCGACGTCCGCCACAAGA
GGTGCAAACGTGAAGGGTGCACCAAGCAACCGAGGTACGGTGTGAAGGGG
AGCAAAAAGGTCGAGTTCTGCTCTCAGCATGCCAAGGATGGAATGATGGA
TGTCCACAGCACGAGGTGCGTACACGAAGGGTGCACCAAAAGGTCTTCAT
ACGGCGTGAGGGGGAGCAAAAAGGCCGATTTCTGTTCTCAGCATGCCAAG
GATGGAATGATCGACGTCCGCAGCAAGAGGTGTGGACACGAAGGGTGCAC
CAAGCAATCGAGGTACGGTGTGGAGGGCAGCAAAAAGGCCGAATTCTGTT
CTCAGCATGCCAAGGATGGAATGATGAATAACCACATCAAGAGGTGCGGA
CACGAAGGGTGCGCCAAGATGTCTTCATACGGCATGAGGGGGAGCAAAAA
GGCCGAGTTCTGTTGTCAGCATGCCAAGGACGGAATGATTGACATTCGCC
ACAAGAGGTGTGAACACGAAGGGTGCACCAAGCAACCGAGGTACGGTGTG
GAGGGGAGCAAAAAAGCCGAGTTCTGCTCTCAGCATGCCAATGGTGGAAT
GATCGACGTCTACCGCAAGAGGTGCGGACACGAAGGGTGCACCATGCAGC
CGTCGTACGGTGTGGCGGGGAGCAAGAAGGCCGAGTTGTGCTCTCAGCAT
TCCATGGGGGGTATGACAAATACGAAATCGCGCCGGCCTTGCACCGGTAG
TGCGGCAAACGGCCGACGAGGGCGTCGTGATAAACATGCGGTCTCCGAAA
CGCGCCGTGGTGACGCAGGTCAGCGTCGGACTAAGCGCCTTCGTCCTTCT
ACGGTGGCTTCGTCTGGGGAGACCACGGGGAGTAGTAAACGAGCCTGCTG
GACTCGGGGCGCGTCTGCGGTTTCCGCGCCGGTCAAGGAGGAGGCAGTAG
ACAACGTGATGGCGGGTAGAGTTTATCCTTGGAGCCGTGATATTTTGTGG
CAAAGGCGGCAGTCTTGTCCTGAGAGGACACGTTGA
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