mRNA_P-littoralis_Contig65.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.5.1
Unique NamemRNA_P-littoralis_Contig65.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.5.1 vs. uniprot
Match: D8LQN5_ECTSI (Similar to putative chromatin structure regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.800e-7
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:   92 GFVIFNRCFKTLPELFNWFKGNAQQLGISSRSGRKA 199
            G+V+  RCFKTLPELF WFK NAQQLG SSR+ RK+
Sbjct:  161 GYVMSKRCFKTLPELFKWFKLNAQQLGRSSRTSRKS 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQN5_ECTSI5.800e-772.22Similar to putative chromatin structure regulator ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:19636..20190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791352.0558352-CDS-P-littoralis_Contig65:19635..201901680791352.0558352-CDS-P-littoralis_Contig65:19635..20190Pylaiella littoralis U1_48CDSP-littoralis_Contig65 19636..20190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.5.1prot_P-littoralis_Contig65.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 19636..20190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.5.1

>prot_P-littoralis_Contig65.5.1 ID=prot_P-littoralis_Contig65.5.1|Name=mRNA_P-littoralis_Contig65.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MSALDCLSQRSHRPFCLCMPHKEYRVVEVSGIRNIQPLLQDPSGAFQLVQ
GQCAATRHLEQERTKGDVCKKKRARGNRHIMLLCTMNHCYGGAVDARHRC
RSCTMISCMKSSRPRQLLEVSHFATIRHVPPCHTDLVTTLFAAAPSYYFV
RTSNACRLLDHSSPFALPSPFRGKHREAPAVPPQT
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mRNA from alignment at P-littoralis_Contig65:19636..20190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.5.1 ID=mRNA_P-littoralis_Contig65.5.1|Name=mRNA_P-littoralis_Contig65.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig65:19636..20190+ (Pylaiella littoralis U1_48)
ATGTCTGCTTTGGATTGTTTGTCCCAACGAAGTCATCGGCCCTTTTGTCT
ATGCATGCCGCATAAGGAATACCGCGTGGTGGAAGTCTCGGGGATTCGTA
ATATTCAACCGTTGCTTCAAGACCCTTCCGGAGCTTTTCAATTGGTTCAA
GGGCAATGCGCAGCAACTCGGCATCTCGAGCAGGAGCGGACGAAAGGCGA
TGTATGCAAGAAAAAAAGGGCCAGAGGCAACAGGCATATTATGCTGCTGT
GTACAATGAACCATTGTTATGGGGGTGCAGTAGATGCACGGCACCGATGC
AGGTCTTGCACCATGATTTCGTGCATGAAGAGCAGCAGGCCACGCCAACT
ACTTGAAGTGTCCCATTTCGCCACCATCCGCCATGTACCTCCTTGTCATA
CTGACCTAGTTACAACCCTCTTCGCTGCGGCGCCCTCCTATTACTTCGTA
CGCACTTCCAACGCGTGTCGTCTCCTCGACCATTCCTCTCCTTTCGCCCT
CCCTTCCCCGTTCCGCGGCAAACACAGGGAAGCACCCGCCGTTCCTCCGC
AAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:19636..20190+

>mRNA_P-littoralis_Contig65.5.1 ID=mRNA_P-littoralis_Contig65.5.1|Name=mRNA_P-littoralis_Contig65.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig65:19636..20190+ (Pylaiella littoralis U1_48)
ATGTCTGCTTTGGATTGTTTGTCCCAACGAAGTCATCGGCCCTTTTGTCT
ATGCATGCCGCATAAGGAATACCGCGTGGTGGAAGTCTCGGGGATTCGTA
ATATTCAACCGTTGCTTCAAGACCCTTCCGGAGCTTTTCAATTGGTTCAA
GGGCAATGCGCAGCAACTCGGCATCTCGAGCAGGAGCGGACGAAAGGCGA
TGTATGCAAGAAAAAAAGGGCCAGAGGCAACAGGCATATTATGCTGCTGT
GTACAATGAACCATTGTTATGGGGGTGCAGTAGATGCACGGCACCGATGC
AGGTCTTGCACCATGATTTCGTGCATGAAGAGCAGCAGGCCACGCCAACT
ACTTGAAGTGTCCCATTTCGCCACCATCCGCCATGTACCTCCTTGTCATA
CTGACCTAGTTACAACCCTCTTCGCTGCGGCGCCCTCCTATTACTTCGTA
CGCACTTCCAACGCGTGTCGTCTCCTCGACCATTCCTCTCCTTTCGCCCT
CCCTTCCCCGTTCCGCGGCAAACACAGGGAAGCACCCGCCGTTCCTCCGC
AAACG
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