mRNA_P-littoralis_Contig65.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.60.1
Unique NamemRNA_P-littoralis_Contig65.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:252414..253016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size288
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.8947213-UTR-P-littoralis_Contig65:252413..2525571680791351.8947213-UTR-P-littoralis_Contig65:252413..252557Pylaiella littoralis U1_48UTRP-littoralis_Contig65 252414..252557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.9087374-CDS-P-littoralis_Contig65:252557..2526141680791351.9087374-CDS-P-littoralis_Contig65:252557..252614Pylaiella littoralis U1_48CDSP-littoralis_Contig65 252558..252614 -
1680791351.9242926-CDS-P-littoralis_Contig65:252929..2530161680791351.9242926-CDS-P-littoralis_Contig65:252929..253016Pylaiella littoralis U1_48CDSP-littoralis_Contig65 252930..253016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.60.1prot_P-littoralis_Contig65.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 252558..253016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.60.1

>prot_P-littoralis_Contig65.60.1 ID=prot_P-littoralis_Contig65.60.1|Name=mRNA_P-littoralis_Contig65.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
KPDCRTTLYCTVVVDSHNCTYPLLLEHTSYCIMIQRTTVAYLVKSNR*
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mRNA from alignment at P-littoralis_Contig65:252414..253016-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.60.1 ID=mRNA_P-littoralis_Contig65.60.1|Name=mRNA_P-littoralis_Contig65.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig65:252414..253016- (Pylaiella littoralis U1_48)
AAGCCGGACTGCCGGACTACTCTGTACTGTACTGTTGTTGTTGATTCTCA
CAATTGTACTTACCCGCTGCTTCTTGAACATACAAGTGTGTTGTCATCCC
ATATTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCCCATCGACGG
GGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTT
CTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGTCCC
TACCCTCGTCGGCGAAGCCGAATCTGCTTTTACTGACAGCATAGCCGCTT
TCAAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTCT
GCATCTAGTGGTTAACGAGGGACCACTAGTCCACCGGGGCGACCAGTACA
AGTACTGTATCATGATACAGCGTACTACTGTAGCGTACCTCGTAAAATCA
AATAGATAGGAGCCAACGAGCGGAGGAATTATTGCGGGTCGCTTTCTTTT
AATTTTTTTTTACTTTTGAGGAGCCACGAGAGAAACCCGAAAGCAGGCCG
ATGGAAAAAAACTTGACCAAATTACCACACAGAGGACGTACGACGAAAAC
AGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:252414..253016-

>mRNA_P-littoralis_Contig65.60.1 ID=mRNA_P-littoralis_Contig65.60.1|Name=mRNA_P-littoralis_Contig65.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig65:252414..253016- (Pylaiella littoralis U1_48)
AAGCCGGACTGCCGGACTACTCTGTACTGTACTGTTGTTGTTGATTCTCA
CAATTGTACTTACCCGCTGCTTCTTGAACATACAAGTTACTGTATCATGA
TACAGCGTACTACTGTAGCGTACCTCGTAAAATCAAATAGATAG
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