mRNA_P-littoralis_Contig65.31.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.31.3
Unique NamemRNA_P-littoralis_Contig65.31.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.31.3 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.890e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:  303 GCPKYGTYGAKGNKEAEFCCQHAKDGMINVRSKRCGH 413
            GC K+ +YG  G+K+ EFC QHAK GM+N+RS+RC H
Sbjct:  113 GCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRCDH 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.31.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE1_ECTSI2.890e-559.46EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:120121..124522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMW7
Model size2939
Max annot lvl2880.D7FMW7|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.95e-07
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size2046
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.823044-UTR-P-littoralis_Contig65:120120..1203921680791351.823044-UTR-P-littoralis_Contig65:120120..120392Pylaiella littoralis U1_48UTRP-littoralis_Contig65 120121..120392 +
1680791351.858161-UTR-P-littoralis_Contig65:123901..1245221680791351.858161-UTR-P-littoralis_Contig65:123901..124522Pylaiella littoralis U1_48UTRP-littoralis_Contig65 123902..124522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.8358748-CDS-P-littoralis_Contig65:120392..1224251680791351.8358748-CDS-P-littoralis_Contig65:120392..122425Pylaiella littoralis U1_48CDSP-littoralis_Contig65 120393..122425 +
1680791351.8484704-CDS-P-littoralis_Contig65:123888..1239011680791351.8484704-CDS-P-littoralis_Contig65:123888..123901Pylaiella littoralis U1_48CDSP-littoralis_Contig65 123889..123901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.31.3prot_P-littoralis_Contig65.31.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 120393..123901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.31.3

>prot_P-littoralis_Contig65.31.3 ID=prot_P-littoralis_Contig65.31.3|Name=mRNA_P-littoralis_Contig65.31.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=682bp
MAKKCTGYSPGCPKYGTYGAKGNKEAEFCCQHAKDGMINVRSKRCGHEGC
TKQPSYRVEGTKKAEFCCQHSKDGMIDVRSKRCGHEGCTKHPSYGVEGSK
KAEFCCQHAKDGMIDVRSKRCGYDGCIKQSRYGVAGSKMTEFCRQHAKDG
MMDIRRKRCGHEGCTKQAAYGVEGSKKAEFCALHAKDGMVDVNNKRCEHE
ECTKRPRYGVEGSKKAEFCALHAKDGMIDVRSKRCGHEGCTKHPSYGVEG
SKKAEFCAQHGKDGMVDVRKRCGHEGCTKHPSYGMEGSTKAEFCSQHAED
GMIDVRTKRCGHEGCTKHPSYGVGGSKKAEFCSQHAKDGMIDIRSKRCGH
EGCTKHPSYGVEGSKKTEFCSQHAKDGMMDVRSKRCGHDGCIKQPRYGVA
GSKMTEFCCQHAKEGMMDIRRKRCGREGCTKQAAYGVEGSKKAEFCALHA
EDGMIDIRSRRCGHEGCTKHPSYGVEGSKKAEFCALHAKDGMIDVRSKRC
GHGGCTKIPRYGVEGSKGAEFCCQHAKDGMVDVRNKRCGHEGCTRLPSYG
VKGSKKTEFCAQHSMAGMVNTKSRRACTGSVVNGERGCRGADVGSDMRRG
DAGKPWTKRLHPSTVSGASSEEVTRCGKRACPTWGASALPVPVKEEAGDK
VMAGRAYPWSRDILRQRGNSSLRGSVKRLVR*
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mRNA from alignment at P-littoralis_Contig65:120121..124522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.31.3 ID=mRNA_P-littoralis_Contig65.31.3|Name=mRNA_P-littoralis_Contig65.31.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4402bp|location=Sequence derived from alignment at P-littoralis_Contig65:120121..124522+ (Pylaiella littoralis U1_48)
TTCCCACTTCCCTCCTTCCAACTGCTCTGCTGCCCTTCTGCCTTTCCCTT
TCCTACACCAAACCGGGTGTCTGTGGGTGGTATAAATCGCAGCTCTACGA
AAATTGAGACAAGCTTCCGTTCTCTGCGTAGGTGTGTGTCTATCGACCCA
TCCTTGGGTACCCGCCTACCGCCTACAGACCACGTATACTACAGCAGCCT
AACCGCAGCAGTTTATGTAGCTTTGGTTTCGCTCGGGCGGCGGGAAGGAC
ATAGGGAGAAAGAGGGGAAGGGATGGCGAAAAAATGTACCGGTTATTCCC
CCGGCTGTCCCAAGTATGGAACTTACGGTGCGAAGGGCAACAAAGAGGCC
GAGTTTTGTTGTCAGCATGCCAAGGATGGAATGATCAACGTCCGCAGCAA
GAGGTGCGGACACGAAGGGTGCACGAAGCAGCCGTCGTACCGTGTGGAGG
GGACCAAAAAGGCCGAGTTCTGTTGTCAGCATTCCAAGGATGGAATGATC
GACGTCCGCAGCAAGAGGTGTGGACACGAAGGGTGCACCAAGCATCCTTC
ATACGGTGTGGAGGGCAGCAAAAAGGCCGAGTTCTGTTGTCAGCATGCCA
AGGATGGAATGATCGACGTCCGCAGCAAGAGGTGCGGATACGATGGGTGC
ATCAAGCAATCGAGGTACGGTGTGGCGGGCAGCAAAATGACCGAGTTCTG
TCGTCAGCATGCCAAGGATGGAATGATGGATATCCGCCGCAAGAGGTGCG
GGCACGAGGGGTGCACGAAGCAAGCGGCGTACGGTGTGGAGGGGAGCAAA
AAGGCCGAGTTCTGCGCTTTGCATGCCAAGGATGGAATGGTGGATGTCAA
CAACAAGAGGTGCGAGCACGAAGAGTGCACCAAGCGACCGAGGTACGGTG
TGGAGGGCAGCAAAAAGGCCGAGTTCTGCGCTTTGCATGCCAAGGATGGA
ATGATCGACGTCCGCAGCAAGAGGTGTGGACACGAAGGGTGCACCAAGCA
TCCTTCATATGGTGTAGAGGGCAGCAAAAAGGCCGAGTTTTGCGCTCAGC
ACGGCAAGGATGGCATGGTGGATGTCCGCAAGAGGTGCGGGCACGAGGGA
TGCACCAAGCATCCGTCATACGGTATGGAGGGGAGCACAAAGGCCGAGTT
CTGTTCTCAGCATGCCGAGGATGGAATGATCGACGTCCGCACCAAGAGGT
GTGGACACGAAGGGTGCACCAAGCATCCTTCATACGGTGTGGGGGGCAGC
AAAAAGGCCGAGTTTTGTTCTCAGCATGCCAAGGATGGAATGATCGACAT
CCGCAGCAAGAGGTGTGGACACGAAGGGTGCACCAAGCATCCTTCATACG
GTGTGGAGGGCAGCAAAAAGACCGAGTTTTGTTCTCAGCATGCCAAGGAT
GGAATGATGGACGTCCGCAGCAAGAGGTGCGGACACGATGGGTGCATCAA
GCAACCGAGGTACGGTGTGGCGGGCAGCAAAATGACCGAGTTTTGTTGTC
AGCATGCCAAGGAGGGTATGATGGATATCCGCCGCAAGAGGTGCGGGCGC
GAGGGGTGCACGAAGCAAGCGGCGTACGGTGTGGAGGGCAGCAAAAAGGC
CGAGTTCTGCGCTTTGCATGCCGAGGATGGAATGATCGACATCCGCAGCA
GGAGGTGTGGACACGAAGGGTGCACCAAGCATCCTTCATACGGTGTGGAG
GGCAGCAAAAAGGCCGAGTTCTGCGCTTTGCATGCCAAGGATGGAATGAT
CGACGTTCGCAGCAAGAGGTGTGGACACGGAGGGTGCACCAAGATACCGA
GGTACGGTGTGGAGGGGAGCAAAGGGGCCGAGTTTTGTTGTCAGCACGCC
AAGGATGGAATGGTGGATGTCCGCAACAAGAGGTGCGGGCATGAGGGGTG
CACCAGGTTGCCGTCGTACGGTGTGAAGGGGAGCAAAAAGACCGAGTTCT
GCGCTCAGCATTCCATGGCGGGTATGGTGAATACGAAATCGCGCCGAGCT
TGCACCGGCAGTGTGGTCAACGGCGAACGAGGGTGTCGTGGTGCAGATGT
GGGTTCCGACATGCGCCGGGGTGACGCGGGTAAGCCATGGACTAAGCGCC
TTCATCCTTCTACGGTATCCGGGGCTTCGTCTGAGGAGGTGACGCGTTGT
GGTAAACGAGCCTGCCCGACTTGGGGCGCTTCTGCGTTACCCGTGCCGGT
CAAAGAAGAGGCAGGGGATAAGGTGATGGCGGGTAGAGCTTACCCTTGGA
GCCGGGATATTTTGCGGCAAAGGGGGAATTCGAGTTTGAGGGGAAGCGTG
AAGAGGTGAGAGGTGCGTTTGAACATGGATCCTGGTAGCTGAGAGTGCTG
TTTCTTCTTGTTTGAGGTATTGCGTGTTTGTTGCGGCAGCGTTTACACTG
CAATTACATGGTTTGTAATCATACGAGCACTACCACACGATCCGAAGAAC
TAGGTGGGACGTTTGATGCCGCAAGTTATGTGTGGTAGTCACCAGGGTGT
AAAGTGAATGGTTCCGGGTTGGATGTGATGCATTAAACACCTCTTCGACC
ATCCGAGTGCTACCAATTTTGCTTGCCCATTTTGCATCCCACCGTCGGTC
CACACTCCCCACGCCCATCCATTTTTCGTCCGAACTAGCTTGGGTTGCTC
CCGGCACATCCACACTCCCCATCCCAAACAGTCGCCCGTCGTCTCCATTT
CCCAATTATGTCTGAGTTTGCTTTGTATCGCCTTTGACGTCGTTTATCAC
CCCGTATTGGTACCATAGATATTGAAAGATCGGCTCTAGCCCGATTAAGG
TTCTCCACGATCTATGGCTAGAGTTCTTGGGGAGGGTATTGTCCTCATAT
GATAGCGATGTCAACACTCGGGGACACGAACATGTCTCGCAACTCCGCAC
CAGAGAATATCCCATTCGCTCTTGTCTGTACCTTGGTCGGCCCTTGTGTC
CATGATGAGATGCGTGGAGTGTCCGTCTCGCGCCTCACCTGTAGCCCCAG
GCTCACCCCCCGCGCCTTGAACTTAACGCAACATTGTACCTCAAAATACG
AAAAGCGCTCTGTCTGTTGTCCTCAGAAAAACGAGGCAATAATCGAACAC
CGTCCGGCGTTCTTGCTACGCTTACGTGATCACATTCGTTCCCCTCGCTC
TCAAGTTTGGGAAATGGGAATACTAGCTTGTGTCGCATGTTTCGATGGTG
CAGTCCCTTAATGTTTCAGCAGCTCAGCAGATTCGTAGGGATATGTTGCG
GTTGTGACATTTGAATATGGCTGAACAAGCCGGATATCTCGCAGCGAACG
ACATTTCCGTCACATATGCCCGTCTTGTTGAACAGTTTGCTTCACTCGCC
CGTTACACGCCAAGAATTTCAAAGCGTGTCTAAGCTCCCCCGTCCCATCC
CATCGCACCAGTTGCTCCGCCACGTGAAAGGCCTTGTTTATTCGGCCTTA
TTCTCGCCAATCGTCGAAACATATCCCACCAAGCGCTGCTGCGCTATACA
TATCACTTCCAGTAGACGTCTGGCGTCAAATCGCATTTTGTTGAGACCTT
TGCTGCCTCTTTTCTCGAGAACGTGCCGAAATGCATGCAAGGCCAGTTCC
AACGCGTTCCGATCGGCCATTTGACACCATCATACTGCACTTTCAAGCAG
AGAGAGGCGGACAGCTTTCAAGCAGCAACCACCACGCGTGCGGGGAGATG
CATTTCTGTTGTGACGCCCGTTTGCCTGTTGAAATGCTGCATGTTGTTTT
TGTCATCCCTTTTCACAGGTTGGTCAGGTGAACCATAGCCCAGGCTAAAA
GGAAGGCGTGCAGCGAACGAAGAGCAGCGTCCTAAAGACGACCTTATTTT
CAGAGGGTGGCAGCTTCGGGTTCGATTTTTCGACACAATATTGTGCGGCT
ACTGCTGTACGACAGGGCAAACCCCGTGGTTTTACCTTGATTTCAGTAAA
CCAGGGCAACGTGCGCATCTTGCATTGGTATGCGCTGGATCTTCGCTTCA
ATTGCTGGTGTCCCTCGCTTTTACATCATAGAGGGTTGTTGTCGTGGGTT
GCTCTTATAGACCAGATTGGTGGATATGCAAATGTTAGGGGCGGGGCGGC
GTGGAGGTAGCTTTCAATTCGGGGTATATTTAGTGTAACTCCGTAACACG
TTGCTATGTCAGATTGCGAGGACTTTATTGCGTGAAAAGTCGGCGCGGAG
GCGACGTGATGACTGTAGGACCACGCAGGATAGAAAAATGGGAGGATGTG
TCACGCTGACCTTGACCTTTCAGTTCGACCTAGATCGCAGCCTCGGCTTA
AAAATCTCTCCTTGAGCAGGCAATCGGCCTATCGGTATTCACGTGATCCG
TTGCAACCCTGTTCTGTGAAGTGCTGCTTCATTGTTTCCCCGTGTCCTTT
CC
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:120121..124522+

>mRNA_P-littoralis_Contig65.31.3 ID=mRNA_P-littoralis_Contig65.31.3|Name=mRNA_P-littoralis_Contig65.31.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2046bp|location=Sequence derived from alignment at P-littoralis_Contig65:120121..124522+ (Pylaiella littoralis U1_48)
ATGGCGAAAAAATGTACCGGTTATTCCCCCGGCTGTCCCAAGTATGGAAC
TTACGGTGCGAAGGGCAACAAAGAGGCCGAGTTTTGTTGTCAGCATGCCA
AGGATGGAATGATCAACGTCCGCAGCAAGAGGTGCGGACACGAAGGGTGC
ACGAAGCAGCCGTCGTACCGTGTGGAGGGGACCAAAAAGGCCGAGTTCTG
TTGTCAGCATTCCAAGGATGGAATGATCGACGTCCGCAGCAAGAGGTGTG
GACACGAAGGGTGCACCAAGCATCCTTCATACGGTGTGGAGGGCAGCAAA
AAGGCCGAGTTCTGTTGTCAGCATGCCAAGGATGGAATGATCGACGTCCG
CAGCAAGAGGTGCGGATACGATGGGTGCATCAAGCAATCGAGGTACGGTG
TGGCGGGCAGCAAAATGACCGAGTTCTGTCGTCAGCATGCCAAGGATGGA
ATGATGGATATCCGCCGCAAGAGGTGCGGGCACGAGGGGTGCACGAAGCA
AGCGGCGTACGGTGTGGAGGGGAGCAAAAAGGCCGAGTTCTGCGCTTTGC
ATGCCAAGGATGGAATGGTGGATGTCAACAACAAGAGGTGCGAGCACGAA
GAGTGCACCAAGCGACCGAGGTACGGTGTGGAGGGCAGCAAAAAGGCCGA
GTTCTGCGCTTTGCATGCCAAGGATGGAATGATCGACGTCCGCAGCAAGA
GGTGTGGACACGAAGGGTGCACCAAGCATCCTTCATATGGTGTAGAGGGC
AGCAAAAAGGCCGAGTTTTGCGCTCAGCACGGCAAGGATGGCATGGTGGA
TGTCCGCAAGAGGTGCGGGCACGAGGGATGCACCAAGCATCCGTCATACG
GTATGGAGGGGAGCACAAAGGCCGAGTTCTGTTCTCAGCATGCCGAGGAT
GGAATGATCGACGTCCGCACCAAGAGGTGTGGACACGAAGGGTGCACCAA
GCATCCTTCATACGGTGTGGGGGGCAGCAAAAAGGCCGAGTTTTGTTCTC
AGCATGCCAAGGATGGAATGATCGACATCCGCAGCAAGAGGTGTGGACAC
GAAGGGTGCACCAAGCATCCTTCATACGGTGTGGAGGGCAGCAAAAAGAC
CGAGTTTTGTTCTCAGCATGCCAAGGATGGAATGATGGACGTCCGCAGCA
AGAGGTGCGGACACGATGGGTGCATCAAGCAACCGAGGTACGGTGTGGCG
GGCAGCAAAATGACCGAGTTTTGTTGTCAGCATGCCAAGGAGGGTATGAT
GGATATCCGCCGCAAGAGGTGCGGGCGCGAGGGGTGCACGAAGCAAGCGG
CGTACGGTGTGGAGGGCAGCAAAAAGGCCGAGTTCTGCGCTTTGCATGCC
GAGGATGGAATGATCGACATCCGCAGCAGGAGGTGTGGACACGAAGGGTG
CACCAAGCATCCTTCATACGGTGTGGAGGGCAGCAAAAAGGCCGAGTTCT
GCGCTTTGCATGCCAAGGATGGAATGATCGACGTTCGCAGCAAGAGGTGT
GGACACGGAGGGTGCACCAAGATACCGAGGTACGGTGTGGAGGGGAGCAA
AGGGGCCGAGTTTTGTTGTCAGCACGCCAAGGATGGAATGGTGGATGTCC
GCAACAAGAGGTGCGGGCATGAGGGGTGCACCAGGTTGCCGTCGTACGGT
GTGAAGGGGAGCAAAAAGACCGAGTTCTGCGCTCAGCATTCCATGGCGGG
TATGGTGAATACGAAATCGCGCCGAGCTTGCACCGGCAGTGTGGTCAACG
GCGAACGAGGGTGTCGTGGTGCAGATGTGGGTTCCGACATGCGCCGGGGT
GACGCGGGTAAGCCATGGACTAAGCGCCTTCATCCTTCTACGGTATCCGG
GGCTTCGTCTGAGGAGGTGACGCGTTGTGGTAAACGAGCCTGCCCGACTT
GGGGCGCTTCTGCGTTACCCGTGCCGGTCAAAGAAGAGGCAGGGGATAAG
GTGATGGCGGGTAGAGCTTACCCTTGGAGCCGGGATATTTTGCGGCAAAG
GGGGAATTCGAGTTTGAGGGGAAGCGTGAAGAGGTTGGTCAGGTGA
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