mRNA_P-littoralis_Contig649.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.38.1
Unique NamemRNA_P-littoralis_Contig649.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig649.38.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.110e-10
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  172 ATMRPSSWNTPAAVLFPQYISYDRPRAAPVVDGSASQESTPASAGQTIEIVNP 330
            ATMR  S N  +AV+FP+Y+S  +PRA P V+GSASQESTPASAGQ   + NP
Sbjct:  132 ATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNP 184
[Close]
BLAST of mRNA_P-littoralis_Contig649.38.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.330e-10
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  172 ATMRPSSWNTPAAVLFPQYISYDRPRAAPVVDGSASQESTPASAGQTIEIVNP 330
            ATMR  S N  +AV+FP+YIS D+P A PVV GSASQEST A AGQT  + NP
Sbjct:  605 ATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNP 657
[Close]
BLAST of mRNA_P-littoralis_Contig649.38.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.380e-9
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  172 ATMRPSSWNTPAAVLFPQYISYDRPRAAPVVDGSASQESTPASAGQTIEIVN 327
            ATMR  S N  +AV+F +Y+S  +PRA P V+G ASQESTPASAGQT  + N
Sbjct:   67 ATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFN 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZP5_9PHAE2.110e-1062.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE9.330e-1064.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE4.380e-959.62Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:71967..72402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size436
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.3797128-UTR-P-littoralis_Contig649:71966..721431680791351.3797128-UTR-P-littoralis_Contig649:71966..72143Pylaiella littoralis U1_48UTRP-littoralis_Contig649 71967..72143 +
1680791351.4051712-UTR-P-littoralis_Contig649:72308..724021680791351.4051712-UTR-P-littoralis_Contig649:72308..72402Pylaiella littoralis U1_48UTRP-littoralis_Contig649 72309..72402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.3925579-CDS-P-littoralis_Contig649:72143..723081680791351.3925579-CDS-P-littoralis_Contig649:72143..72308Pylaiella littoralis U1_48CDSP-littoralis_Contig649 72144..72308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.38.1prot_P-littoralis_Contig649.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 72144..72308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.38.1

>prot_P-littoralis_Contig649.38.1 ID=prot_P-littoralis_Contig649.38.1|Name=mRNA_P-littoralis_Contig649.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MRPSSWNTPAAVLFPQYISYDRPRAAPVVDGSASQESTPASAGQTIEIVN
PSTR*
back to top

mRNA from alignment at P-littoralis_Contig649:71967..72402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.38.1 ID=mRNA_P-littoralis_Contig649.38.1|Name=mRNA_P-littoralis_Contig649.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=436bp|location=Sequence derived from alignment at P-littoralis_Contig649:71967..72402+ (Pylaiella littoralis U1_48)
GAGGCCGTGGGCAATGTTTGATGCGTTGTTCACCGTTCACCATTCTTATG
TGCTCCCTCGCGATATCGCTTGCCGGTAGTTGGATAAGCTCTCGAGGACA
GCGGCAGACTTGAAGGCGGCGAACGAAGCGAACGAGCGGTGGAAGGAGAC
AGTGAAGAAGTATCGGGAGAAGCTACCATGCGGCCTAGCTCCTGGAACAC
TCCCGCAGCTGTTCTGTTCCCGCAGTACATCAGCTACGACAGACCCCGCG
CGGCCCCTGTGGTAGACGGTAGTGCATCCCAGGAGTCGACGCCCGCCTCT
GCAGGCCAGACCATCGAGATCGTCAACCCATCCACTCGTTAATAGGTTTA
GGAGGGGTAGGGTGACAATGGAGAGAGAGGACGAGAAGATCGCAAGCCAC
TCGCTTTTTTTTGTTCAGTATTGCCAGATCATATAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig649:71967..72402+

>mRNA_P-littoralis_Contig649.38.1 ID=mRNA_P-littoralis_Contig649.38.1|Name=mRNA_P-littoralis_Contig649.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig649:71967..72402+ (Pylaiella littoralis U1_48)
ATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTTCCCGCAGTA
CATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGACGGTAGTGCAT
CCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACCATCGAGATCGTCAAC
CCATCCACTCGTTAA
back to top