mRNA_P-littoralis_Contig649.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.35.1
Unique NamemRNA_P-littoralis_Contig649.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:69845..71084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size623
Hectar predicted targeting categoryother localisation
Exons4
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.2661808-UTR-P-littoralis_Contig649:69844..698551680791351.2661808-UTR-P-littoralis_Contig649:69844..69855Pylaiella littoralis U1_48UTRP-littoralis_Contig649 69845..69855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.276885-CDS-P-littoralis_Contig649:69855..699661680791351.276885-CDS-P-littoralis_Contig649:69855..69966Pylaiella littoralis U1_48CDSP-littoralis_Contig649 69856..69966 +
1680791351.2885678-CDS-P-littoralis_Contig649:70158..704131680791351.2885678-CDS-P-littoralis_Contig649:70158..70413Pylaiella littoralis U1_48CDSP-littoralis_Contig649 70159..70413 +
1680791351.3014004-CDS-P-littoralis_Contig649:70650..708391680791351.3014004-CDS-P-littoralis_Contig649:70650..70839Pylaiella littoralis U1_48CDSP-littoralis_Contig649 70651..70839 +
1680791351.312906-CDS-P-littoralis_Contig649:71027..710841680791351.312906-CDS-P-littoralis_Contig649:71027..71084Pylaiella littoralis U1_48CDSP-littoralis_Contig649 71028..71084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.35.1prot_P-littoralis_Contig649.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 69856..71084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.35.1

>prot_P-littoralis_Contig649.35.1 ID=prot_P-littoralis_Contig649.35.1|Name=mRNA_P-littoralis_Contig649.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSGKVKTGTSAQAFVWVREWLATSEY
AGIVGFDTTPYSIGHIFVRLLKHKNYFCLDVAGMQKKAKVYSIQSCEWGD
TYIDLFKSLPLQWSATRLPDTSMVFSRDDQGAIVKVTVEKPDLGGRGSVK
SITL
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mRNA from alignment at P-littoralis_Contig649:69845..71084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.35.1 ID=mRNA_P-littoralis_Contig649.35.1|Name=mRNA_P-littoralis_Contig649.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1240bp|location=Sequence derived from alignment at P-littoralis_Contig649:69845..71084+ (Pylaiella littoralis U1_48)
GGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGG
ACACGATCGCACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGA
CCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGG
GTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAAC
ACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCCCGCGTTTCCTTCCC
CTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCGTACCTCTGTGTCGT
CGTTTGTGATATAGGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTT
GGCTTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGT
GTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGGTCAAGACAGGAA
CCTCCGCCCAAGCGTTCGTATGGGTGCGTGAATGGCTAGCCACCTCGGAG
TATGCCGGAATAGTGGGATTCGACACGACGCCCTACTCGATTGGACACAT
ATTCGTCCGCCTTCTGAAGGTACGGGATAATTGTGTCGTAGACGGTTGGC
CCGAGTGGGTCTACGTGCATCTGATTTTTTATTTGGAAAGACAGCTGTGA
TCACAAGTGTATCGCACCCTAAACCGAAGCTTCGCGACTGTTGGATCGAT
CTTTGAGTACGAGAGCTTTCCATTTGATGTCTTATATTTCTACCTGCGCA
CCCCTCCGCCCGTTCCCCTGTGTTCTCCTCGGCTACCGTTGTACTTCACC
CGAAAGCACAAGAACTACTTCTGTCTGGACGTGGCTGGTATGCAGAAGAA
AGCGAAGGTGTATTCCATCCAGTCGTGCGAGTGGGGCGATACGTACATCG
ACCTCTTCAAGTCGTTGCCCTTGCAATGGTCCGCGACGAGGCTACCGGAT
ACCTCGATGGTCTTCTCAAGAGATGACCAAGGAGCAATCGTGAAGGTCAG
GGTCGCCTCAATCTTGCGTGTCAGTGGTCGACGATTGTGTTTGTCCCCGT
CGGCGCCTAATATTGAAGTGCCGAAGTATGTAGAGGATAATATACTGTAT
GCTTGAATCGATTTTCGGGCAGGGGCCCGTATTGATTATTGTTTTGCGCT
TTCCGGTGTTTCCGATGCTGCGGTATGGTCCAGGTCACCGTCGAGAAGCC
GGACCTAGGCGGTCGCGGGTCAGTCAAATCCATAACGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig649:69845..71084+

>mRNA_P-littoralis_Contig649.35.1 ID=mRNA_P-littoralis_Contig649.35.1|Name=mRNA_P-littoralis_Contig649.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig649:69845..71084+ (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGGTCAAGACAGGAACCT
CCGCCCAAGCGTTCGTATGGGTGCGTGAATGGCTAGCCACCTCGGAGTAT
GCCGGAATAGTGGGATTCGACACGACGCCCTACTCGATTGGACACATATT
CGTCCGCCTTCTGAAGCACAAGAACTACTTCTGTCTGGACGTGGCTGGTA
TGCAGAAGAAAGCGAAGGTGTATTCCATCCAGTCGTGCGAGTGGGGCGAT
ACGTACATCGACCTCTTCAAGTCGTTGCCCTTGCAATGGTCCGCGACGAG
GCTACCGGATACCTCGATGGTCTTCTCAAGAGATGACCAAGGAGCAATCG
TGAAGGTCACCGTCGAGAAGCCGGACCTAGGCGGTCGCGGGTCAGTCAAA
TCCATAACGTTG
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