mRNA_P-littoralis_Contig649.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.9.1
Unique NamemRNA_P-littoralis_Contig649.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.340e-58
Identity = 83/107 (77.57%), Postives = 95/107 (88.79%), Query Frame = -1
Query:    4 LLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 324
            LLGFTGAIGSTDVTHI+WA CPYSWA+ YTGKEG  +IA+QAIVDHTGR+LA TKGF G+MNDKTII YD A+ KIR+DPVY EK YTL D++G+PF+RKGNYSIVD
Sbjct:    6 LLGFTGAIGSTDVTHIRWAFCPYSWARQYTGKEGLPSIAYQAIVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDKNGQPFERKGNYSIVD 112          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5KVT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT5_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.030e-55
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = -1
Query:    4 LLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 324
            LLGFTGAIGSTDVTHI+WA CPYSWA+ YTGKEGF +IA+QAIV+ TG +LA TKGF G+MNDKTII YD A+ KIR+DPVY EK YTLFD++G+PF+R+GN SIVD
Sbjct:    6 LLGFTGAIGSTDVTHIRWACCPYSWARQYTGKEGFPSIAYQAIVNDTGLVLAVTKGFAGAMNDKTIIRYDTAVAKIRRDPVYTEKVYTLFDKNGQPFEREGNNSIVD 112          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5KQK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK3_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.560e-55
Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = -1
Query:    4 LLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 324
            LL F GAI STDVTHI+WA CPYSWA+ Y GKEGF +IA+QAIVDHTG +LA TKGF G MNDKTII YD A+ KIR+DPVY +K YTLFD++G+PF+RKGNYSIVD
Sbjct:    7 LLEFAGAIRSTDVTHIRWACCPYSWARQYMGKEGFPSIAYQAIVDHTGHVLAVTKGFAGVMNDKTIIRYDTAVAKIRRDPVYTKKVYTLFDKNGQPFERKGNYSIVD 113          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5L7Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y7_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 7.240e-51
Identity = 74/107 (69.16%), Postives = 91/107 (85.05%), Query Frame = -1
Query:    4 LLGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 324
            LL FTGAIGSTDVTHI+WA CPYSWA+ YTGK+GF +IA++AIVD+TG +L  TKGF G+M+DK I+ YD A+ KIR+DP Y EK  TLFD++G+PF+RKGNYSIVD
Sbjct:    7 LLEFTGAIGSTDVTHIRWACCPYSWARQYTGKDGFPSIAYEAIVDYTGHVLVVTKGFAGAMSDKPIM-YDTAVAKIRRDPAYTEKVNTLFDKNGQPFERKGNYSIVD 112          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.940e-41
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = -1
Query:    4 LGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 321
            LGF+GA GSTDVTHI W  CPY+ A+ YTGKEG+ T+A+Q  VDHT R+LA T GF GS NDK+II YD A+TKIR+DP+Y EKE+T+++  G P+Q KG Y +VD
Sbjct:  224 LGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVD 329          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.370e-40
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = -1
Query:    4 CPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 264
            CPYS A+ YTGKEGF +IA+QAIVDHTGR+LA TKGF G+MNDKTII YD A+  IR+DPVY EK  TLFDE+G PF+RKGNYSIVD
Sbjct:   21 CPYSRARQYTGKEGFPSIAYQAIVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKVNTLFDENGRPFERKGNYSIVD 107          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 8.450e-40
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = -1
Query:    4 LGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 321
            +GF GA+GSTDVTHI W  CPY+ A+ YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTII YD A+T+IR DPVY E++Y L+ + G+ F+ KG Y +VD
Sbjct:  149 IGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVD 254          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.650e-39
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = -1
Query:    4 LGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 321
            +GF GA+GSTDVTHI W  CPY+ A+ YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTII YD A+T+IR DPVY E++Y L+ + G+ F+ KG Y +VD
Sbjct:  240 IGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVD 345          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.440e-35
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = -1
Query:    4 LGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 321
            LGFTGA+GS DVTHI W+ CPY+ A+ YTGKEGF TI +Q  VDH GR +A T+GF GS NDKT + +DAA+ KIR D  Y EK + ++++ G     KG Y +VD
Sbjct:   26 LGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVD 131          
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.770e-34
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = -1
Query:    4 LGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIRKDPVYKEKEYTLFDEHGEPFQRKGNYSIVD 321
            LG TGAIGSTDVTHI W  CP++  + YTGKEGF TIA+Q  VDH GR +A T GF G+ NDKTII YDA +  I+ D  Y ++ Y L    G   +RKG Y IVD
Sbjct:    7 LGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVD 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J792_9PHAE1.340e-5877.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVT5_9PHAE1.030e-5574.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQK3_9PHAE5.560e-5573.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y7_9PHAE7.240e-5169.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.940e-4162.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ66_9PHAE4.370e-4074.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE8.450e-4060.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE3.650e-3960.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI2.440e-3555.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG32_9PHAE2.770e-3456.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:23014..23337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size324
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.2264748-CDS-P-littoralis_Contig649:23013..233371680791351.2264748-CDS-P-littoralis_Contig649:23013..23337Pylaiella littoralis U1_48CDSP-littoralis_Contig649 23014..23337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.9.1prot_P-littoralis_Contig649.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 23014..23337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.9.1

>prot_P-littoralis_Contig649.9.1 ID=prot_P-littoralis_Contig649.9.1|Name=mRNA_P-littoralis_Contig649.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MVDDAVVALSLEWLTMLVEESVLLLLVDRVFADFSDGRVVRDDGLVVHRA
AKALCRGQETPSVIHDRLKGDGRETFLSRIVLCPRIRASRPLDVGDISRT
DCSSKSQ*
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mRNA from alignment at P-littoralis_Contig649:23014..23337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.9.1 ID=mRNA_P-littoralis_Contig649.9.1|Name=mRNA_P-littoralis_Contig649.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig649:23014..23337- (Pylaiella littoralis U1_48)
ATGGTCGACGATGCTGTAGTTGCCCTTTCGCTGGAATGGCTCACCATGCT CGTCGAAGAGAGTGTACTCCTTCTCCTTGTAGACCGGGTCTTTGCGGATT TTAGTGATGGCCGCGTCGTACGTGATGATGGTCTTGTCGTTCATCGAGCC GCCAAAGCCCTTTGTCGCGGCCAGGAGACGCCCAGTGTGATCCACGATCG CCTGAAAGGCGATGGTCGCGAAACCTTCCTTTCCCGTATAGTGCTTTGCC CAAGAATACGGGCAAGCCGCCCACTTGATGTGGGTGACATCAGTCGAACC GATTGCTCCAGTAAATCCCAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig649:23014..23337-

>mRNA_P-littoralis_Contig649.9.1 ID=mRNA_P-littoralis_Contig649.9.1|Name=mRNA_P-littoralis_Contig649.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig649:23014..23337- (Pylaiella littoralis U1_48)
ATGGTCGACGATGCTGTAGTTGCCCTTTCGCTGGAATGGCTCACCATGCT
CGTCGAAGAGAGTGTACTCCTTCTCCTTGTAGACCGGGTCTTTGCGGATT
TTAGTGATGGCCGCGTCGTACGTGATGATGGTCTTGTCGTTCATCGAGCC
GCCAAAGCCCTTTGTCGCGGCCAGGAGACGCCCAGTGTGATCCACGATCG
CCTGAAAGGCGATGGTCGCGAAACCTTCCTTTCCCGTATAGTGCTTTGCC
CAAGAATACGGGCAAGCCGCCCACTTGATGTGGGTGACATCAGTCGAACC
GATTGCTCCAGTAAATCCCAGTAG
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