mRNA_P-littoralis_Contig649.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.42.1
Unique NamemRNA_P-littoralis_Contig649.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:87593..88751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size391
Hectar predicted targeting categoryother localisation
Exons3
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.157444-CDS-P-littoralis_Contig649:87592..876131680791351.157444-CDS-P-littoralis_Contig649:87592..87613Pylaiella littoralis U1_48CDSP-littoralis_Contig649 87593..87613 -
1680791351.169612-CDS-P-littoralis_Contig649:87809..879341680791351.169612-CDS-P-littoralis_Contig649:87809..87934Pylaiella littoralis U1_48CDSP-littoralis_Contig649 87810..87934 -
1680791351.184267-CDS-P-littoralis_Contig649:88508..887401680791351.184267-CDS-P-littoralis_Contig649:88508..88740Pylaiella littoralis U1_48CDSP-littoralis_Contig649 88509..88740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.1972303-UTR-P-littoralis_Contig649:88740..887511680791351.1972303-UTR-P-littoralis_Contig649:88740..88751Pylaiella littoralis U1_48UTRP-littoralis_Contig649 88741..88751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.42.1prot_P-littoralis_Contig649.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 87593..88740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.42.1

>prot_P-littoralis_Contig649.42.1 ID=prot_P-littoralis_Contig649.42.1|Name=mRNA_P-littoralis_Contig649.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MAQSMRERGYIKHDSLPSVVIPRTSNIAANGVPEGALILNGNLRLKAAKL
VFGEDFKMSFAVYYDFEKPCDRKAAACVLQSSAEELQPRTIYDNFYFWCD
FLTDLPKPDYPHVKQAFERVGARSPA
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mRNA from alignment at P-littoralis_Contig649:87593..88751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.42.1 ID=mRNA_P-littoralis_Contig649.42.1|Name=mRNA_P-littoralis_Contig649.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1159bp|location=Sequence derived from alignment at P-littoralis_Contig649:87593..88751- (Pylaiella littoralis U1_48)
GAGTGGAACGCATGGCTCAATCAATGAGGGAACGCGGATATATCAAACAC
GACTCTTTGCCATCGGTGGTCATCCCGCGTACGAGCAATATTGCAGCAAA
TGGTGTACCGGAAGGAGCCTTAATTCTCAATGGAAACCTCAGGCTGAAAG
CGGCGAAACTGGTGTTTGGCGAAGATTTCAAAATGTCTTTCGCCGTTTAC
TACGACTTTGAAAAACCATGTGACCGGAAAGCAGCGGCCTGCGGTGAGAA
ATGCTGCACTTTGGCTGTTTTTCAGTAAGACCTACCGGTACTCAGCCGGA
ATAGACGTATGTCAACATCTCCTGAAAGTGAGGTTCACCACCGTGAGCCC
GTCGGGTACACAAAACTCATCGACGTTAAACATTACCGCCGTATAAATCC
TGCAAAAAGCATCAAGAAGGGCGTGTTTTCAATGGTGAGGCTTGTCCAGA
GAGCACGAGCACGAACCACGTACGTAGGCGTGGTACTGATTCCTCCTTAC
ACTGTTGCTGCGTGTTTCCGGTATTTTTCACACGAAGCATGCTCTATACT
GAAAAAAATACTTGAAGGTCATCTTCCCTTTCACAGACGCACCCAGCTTT
CAACCAGCACATATGCACATCACACCAGTCCATTCAACAAACCTTAACGT
AAATATGAGGGACCCAAATATATAAAAACAACCAGAATTCGCCCGTCGAA
ACATATCAAGAACTATTAGTTAGGATCGGTAATCGTCCAGCTGCACAAGT
CGCGATAACCACCGACTCATTCAACACCTTTGTTTGCGCGCTTTTGTACA
ACTAATATGCGTCACAGTCCTCCAAAGTTCTGCGGAAGAGCTCCAGCCTC
GCACCATCTACGACAACTTTTACTTCTGGTGTGATTTCCTGACAGACTTG
CCCAAGCCCGATTACCCGCATGTGAAGCAAGCTTTCGAGAGGGTGAGCGT
CTGTTCCGCAGCCTGTTGTGGTGCTTTTACTTCTATCCACATGTCAAAGT
GCGCCCGTACGCGTCACAGTATCGGAACGGCCTCCACGTCGACACTCTGC
AACCAAAATTAATATAAGTCGGCTGACTCGTACATCAATAGCCTAAATCC
TCTTTTTGTTTTCCGCTTCGCTCTCCGATAAACACAAGGTTGGTGCTAGG
TCCCCCGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig649:87593..88751-

>mRNA_P-littoralis_Contig649.42.1 ID=mRNA_P-littoralis_Contig649.42.1|Name=mRNA_P-littoralis_Contig649.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig649:87593..88751- (Pylaiella littoralis U1_48)
ATGGCTCAATCAATGAGGGAACGCGGATATATCAAACACGACTCTTTGCC
ATCGGTGGTCATCCCGCGTACGAGCAATATTGCAGCAAATGGTGTACCGG
AAGGAGCCTTAATTCTCAATGGAAACCTCAGGCTGAAAGCGGCGAAACTG
GTGTTTGGCGAAGATTTCAAAATGTCTTTCGCCGTTTACTACGACTTTGA
AAAACCATGTGACCGGAAAGCAGCGGCCTGCGTCCTCCAAAGTTCTGCGG
AAGAGCTCCAGCCTCGCACCATCTACGACAACTTTTACTTCTGGTGTGAT
TTCCTGACAGACTTGCCCAAGCCCGATTACCCGCATGTGAAGCAAGCTTT
CGAGAGGGTTGGTGCTAGGTCCCCCGCA
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