mRNA_P-littoralis_Contig649.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.40.1
Unique NamemRNA_P-littoralis_Contig649.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:76026..76872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size167
Hectar predicted targeting categorysignal peptide
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.1173573-CDS-P-littoralis_Contig649:76027..761081680791351.1173573-CDS-P-littoralis_Contig649:76027..76108Pylaiella littoralis U1_48CDSP-littoralis_Contig649 76028..76108 -
1680791351.130184-CDS-P-littoralis_Contig649:76788..768721680791351.130184-CDS-P-littoralis_Contig649:76788..76872Pylaiella littoralis U1_48CDSP-littoralis_Contig649 76789..76872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.40.1prot_P-littoralis_Contig649.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 76028..76872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.40.1

>prot_P-littoralis_Contig649.40.1 ID=prot_P-littoralis_Contig649.40.1|Name=mRNA_P-littoralis_Contig649.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
RQLLLYLLYALPSVRVRLCARAEFCFFTRCGMEVTALRDALGQHDEEHDS
GVSPS
back to top

mRNA from alignment at P-littoralis_Contig649:76026..76872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.40.1 ID=mRNA_P-littoralis_Contig649.40.1|Name=mRNA_P-littoralis_Contig649.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=847bp|location=Sequence derived from alignment at P-littoralis_Contig649:76026..76872- (Pylaiella littoralis U1_48)
CGCCAACTTCTGCTCTACCTGCTGTACGCGCTACCATCAGTACGAGTGAG
ACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGTGAGTCTTGTTGTCA
TAATCTCCTTAGGGCAGCACCCCGGGGTAGTTCCCTACCGAATTCCGACT
ACCCTCGACGTCGCAGGCACTAGCGTCTCGCCCACGAAGGAGGTTTTCCT
CATACACCCGGTGCCGTCAGTATATGTCTCAGGCTCTCTTGGATAGAAGT
CCGTTTGGAAATCGGACTTGTGTAGGCAGACTTCTCTCCAAAATGCGGAC
AAGAATCTCACCGTGTCGAGAGGACCCTGAGCGTTCGCCAGAAGCAGGTT
GAAAAACAATCGATAACGAAGTACTGCTGTAGAGGAGAAAAATCAACGCA
TGGCGTGGAATCAACCCTCCACCACCACCGCCCACCGCGCGCTACGCGAG
AGCACGCCTCGTGCCTGCGGGTGAACAGAACAAACTTCGGGTTGCAGAAG
ATTTCTCGGGTTCAACCTTGGTGCTGTGTTGTGTATCGGAGACAACTATT
TTTTGTATAAAAACCGGACTCCAATTTCGCCGCCGCAGCTACCGTCGCTG
TTTCTCAGTGCTGCTGGCCGTGTTCCCTATCTATCTATGGTTTAGCGGCT
GCCTTCCTCTTCACTTTTGAATTGATATAGTTGTTCGACCTCCAGTACGA
AAAAGAAGGGCAGACTCATCCCGCCTTCACACGAATAAATTTGTTGCTGT
CTGTTTCCCCACAGAGGTGCGGCATGGAAGTAACTGCGCTGCGGGACGCA
CTCGGACAACATGACGAAGAACATGACAGCGGTGTATCTCCTTCCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig649:76026..76872-

>mRNA_P-littoralis_Contig649.40.1 ID=mRNA_P-littoralis_Contig649.40.1|Name=mRNA_P-littoralis_Contig649.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig649:76026..76872- (Pylaiella littoralis U1_48)
CGCCAACTTCTGCTCTACCTGCTGTACGCGCTACCATCAGTACGAGTGAG
ACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGAGGTGCGGCATGGAAG
TAACTGCGCTGCGGGACGCACTCGGACAACATGACGAAGAACATGACAGC
GGTGTATCTCCTTCC
back to top