mRNA_P-littoralis_Contig649.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.30.1
Unique NamemRNA_P-littoralis_Contig649.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:61772..63342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size179
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.0717978-CDS-P-littoralis_Contig649:61771..618671680791351.0717978-CDS-P-littoralis_Contig649:61771..61867Pylaiella littoralis U1_48CDSP-littoralis_Contig649 61772..61867 +
1680791351.0817382-CDS-P-littoralis_Contig649:63261..633421680791351.0817382-CDS-P-littoralis_Contig649:63261..63342Pylaiella littoralis U1_48CDSP-littoralis_Contig649 63262..63342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.30.1prot_P-littoralis_Contig649.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 61772..63342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.30.1

>prot_P-littoralis_Contig649.30.1 ID=prot_P-littoralis_Contig649.30.1|Name=mRNA_P-littoralis_Contig649.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
MEEHRSLGQVERRLANERLRSLEPRERVAISRAAEMKCVLDAFIRVHKAA
GATPAQGGI
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mRNA from alignment at P-littoralis_Contig649:61772..63342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.30.1 ID=mRNA_P-littoralis_Contig649.30.1|Name=mRNA_P-littoralis_Contig649.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1571bp|location=Sequence derived from alignment at P-littoralis_Contig649:61772..63342+ (Pylaiella littoralis U1_48)
ATGGAGGAACATCGTAGCTTGGGACAAGTTGAACGCCGCCTTGCGAACGA
GCGCCTGCGTTCGCTTGAACCCAGAGAACGTGTCGCGATATCCAGGGTGA
GTGAGTTTGTGCCGGGTGATCTGGTCGATCCAGTGGTGTTTGAGTGCACG
AAAGGTACCGACGGGCTGGGCTGACCGAGAAAGTCGCGGTCATCTCGGTC
GGGGCCTAGCCAGGTCTACGTCCGATGTGTCTGAGAGTTCAACTTAAAAT
TGGTGGCCGCGTCTAGAAGGACACGGGTAACTTGTAGCTTCGAAAAGTTT
TAAATCCGATAGATACAGACAAATTATCAATTGGCGGCGCAGTTGTGACT
CTGGCCCCGCTGTTTTCCTTCCGTGCGACCCCGGCTGATACGTCTCGTTG
TACACATATTATACACCAAAATGCAAAAGAGTGTAGCAATTTACTCCGGA
GTACACCGAATGGGCATCGAAGGTGTTTTGACAGACCGCAGAATACCGTA
CCGGTAATCGGCGGAGTTTTGCCCCCGGGGTAATGTCGGCCCCCCGGGGG
TCACCATTTCGGCCGGGAAGCATCAAAATTTTGATTAGCCCCCGGGGTAG
ATCTTTTTTCGAAGAAAAAGAAAAGACCCCCCCCTGTCGTCAATTTCCCC
CCGGGGTAGTAATTTATCCGCGAGTTCCCCCCGGGGGGTTTGCATTTTCC
CTATATTGAATCGTTTTTTGATGGTATCGCGAGGCACTTGAAAGCATGAA
TAGGGGCGAAAATTGCTTCTCCAACTCGGCGCTTCGTGCGCAATTTTTAT
GTGTTACATGATTTTTTTTCGTTTGTGGGTGCTTTCGATTTCTCCTTTTG
CTTTCTGAACGCTTGCTCGTACACCTTATCCATCGCAGGGTCGGCACTTT
CTCTCTGGGTGTGTGTGGTGTGTGGTTGCATGGATCACCAATATTTGGCA
CACCCCCCGGGAAAGATGTCCCCGCGGGTTAGCGGTCTAAAAAAAAAAAG
ATCCCCCCCCTGTCGTCAATTTCCCCCCGGGGGGACTGGTTTCAGCCCAA
AAAAAGATCTCTCCTCCGGGGTCAAAACTCCGCCGATTACGGTAGATAGG
GACGAAAATACACACACACAATTTGTCCCCAAACCAAATGTTCCTAAGAT
ATTCCTGCTCATGTAGGCTAACTCGTGTACGATCAAGATCAATTGACCAG
TCTTGATTGCTTTCTTCTCAATCACACCACGTCAAGCGTTCATTTTCTAC
ATAACTTCGACCCGCGTGGGAATTTGAGTTCAACCACTCTGTGAGTTTCT
TGCTCGGCCCAGCTTGTACTGAGAACCTAAAATGTAAATTTTGCGGCAGG
CCAGGGTAATAGGCCGCGGCGCCCAACTGGTGGGTCAACGATGGGACAAG
GCGTTTGGGGACAATGCCGCGATGGTGAAAGATCTTCACTTGGCCGAGTC
CTTGGGTCCCTTGTCCCGCTTCAAATTGGATGAATACCAGGCGGCAGAGA
TGAAGTGTGTGCTTGATGCATTCATCCGCGTTCATAAGGCAGCAGGAGCT
ACACCAGCTCAGGGAGGTATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig649:61772..63342+

>mRNA_P-littoralis_Contig649.30.1 ID=mRNA_P-littoralis_Contig649.30.1|Name=mRNA_P-littoralis_Contig649.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig649:61772..63342+ (Pylaiella littoralis U1_48)
ATGGAGGAACATCGTAGCTTGGGACAAGTTGAACGCCGCCTTGCGAACGA
GCGCCTGCGTTCGCTTGAACCCAGAGAACGTGTCGCGATATCCAGGGCGG
CAGAGATGAAGTGTGTGCTTGATGCATTCATCCGCGTTCATAAGGCAGCA
GGAGCTACACCAGCTCAGGGAGGTATT
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