mRNA_P-littoralis_Contig1167.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1167.8.1
Unique NamemRNA_P-littoralis_Contig1167.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1167.8.1 vs. uniprot
Match: Q94Z16_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z16_PYLLI)

HSP 1 Score: 253 bits (647), Expect = 2.590e-81
Identity = 118/147 (80.27%), Postives = 133/147 (90.48%), Query Frame = 1 
Query:    1 YKLDIRNTQVFGSVPVYSVGQLMSFDNRRNMTTVTKFSGAFDRETFEQWSDSSAFLFFCLWDLRNMHMAGLDNPEVPRIPFYLFYTSEEVRGIIDATFVRWDFEKDDGLADENARRNDLLPEAYKLSAEHYQEVYYYGFPFGPETRF 441
            + + + +T+VFGS+P YSVGQL+SFDNRRNMTTVT  +GAF+RETF+QWSDSSAFLFFCL DLRN H+A LDNPEVPRIP+YL YTS+E+R IIDATF RWDFE DD LADENARRNDLLPEAYKLSAE+YQEVYYYGFPFGPETRF
Sbjct:    4 FNIYLNHTKVFGSLPGYSVGQLVSFDNRRNMTTVTGSNGAFNRETFDQWSDSSAFLFFCLRDLRNTHVASLDNPEVPRIPYYLLYTSKEIRDIIDATFARWDFETDDSLADENARRNDLLPEAYKLSAEYYQEVYYYGFPFGPETRF 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1167.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q94Z16_PYLLI2.590e-8180.27Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1167contigP-littoralis_Contig1167:42551..43311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size761
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.0972304-UTR-P-littoralis_Contig1167:42550..428671680789485.0972304-UTR-P-littoralis_Contig1167:42550..42867Pylaiella littoralis U1_48UTRP-littoralis_Contig1167 42551..42867 -
1680789485.1215043-UTR-P-littoralis_Contig1167:43245..433111680789485.1215043-UTR-P-littoralis_Contig1167:43245..43311Pylaiella littoralis U1_48UTRP-littoralis_Contig1167 43246..43311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.1087713-CDS-P-littoralis_Contig1167:42867..432451680789485.1087713-CDS-P-littoralis_Contig1167:42867..43245Pylaiella littoralis U1_48CDSP-littoralis_Contig1167 42868..43245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1167.8.1prot_P-littoralis_Contig1167.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1167 42868..43245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1167.8.1

>prot_P-littoralis_Contig1167.8.1 ID=prot_P-littoralis_Contig1167.8.1|Name=mRNA_P-littoralis_Contig1167.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MSFDNRRNMTTVTKFSGAFDRETFEQWSDSSAFLFFCLWDLRNMHMAGLD
NPEVPRIPFYLFYTSEEVRGIIDATFVRWDFEKDDGLADENARRNDLLPE
AYKLSAEHYQEVYYYGFPFGPETRF*
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mRNA from alignment at P-littoralis_Contig1167:42551..43311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1167.8.1 ID=mRNA_P-littoralis_Contig1167.8.1|Name=mRNA_P-littoralis_Contig1167.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=761bp|location=Sequence derived from alignment at P-littoralis_Contig1167:42551..43311- (Pylaiella littoralis U1_48)
TACAAATTAGATATAAGAAATACACAGGTATTTGGTTCGGTTCCAGTTTA
TTCGGTGGGACAATTGATGAGTTTTGATAACAGACGTAATATGACGACTG
TAACTAAATTTAGTGGTGCCTTTGATCGGGAGACTTTTGAGCAATGGAGT
GACTCTTCCGCTTTTTTATTTTTTTGTTTGTGGGATCTACGTAATATGCA
CATGGCTGGCCTGGATAATCCTGAGGTGCCGCGTATCCCATTTTATCTTT
TTTATACAAGTGAAGAGGTTAGGGGCATTATAGATGCTACATTTGTTCGT
TGGGATTTCGAAAAGGATGATGGTTTGGCTGATGAGAATGCTAGACGGAA
TGATTTATTGCCGGAAGCTTATAAATTATCAGCGGAGCATTACCAGGAAG
TGTATTATTATGGTTTTCCCTTTGGTCCTGAGACTCGATTTTAAGCGATA
TAGGAGGTAGCGAGGAGTTTATGTCGTCAGCTCAAACAGCTTTAATATTC
ACTATAATTACTTCCATAGAGAAGAGTCGAAAATTAAAGCGTTCTGAGGA
GAAAAGAGACTACCATTTAATCAAGGATATTGGGTTTCATATGGATTCCA
TACTCTTCAGGATGGAATTTGGCTTGTCTTGTTGTGAGAAGATTGGCCTT
AAAATCCTTCAGGAGTTATCTGAAGAGAGTATTGGTTTATTTACGTACCT
GAAGAAAAAGTATCGTTTGAGGCAAAGATGTAAGGATTGGTCGGGCTATA
GAAGCCCCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1167:42551..43311-

>mRNA_P-littoralis_Contig1167.8.1 ID=mRNA_P-littoralis_Contig1167.8.1|Name=mRNA_P-littoralis_Contig1167.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig1167:42551..43311- (Pylaiella littoralis U1_48)
ATGAGTTTTGATAACAGACGTAATATGACGACTGTAACTAAATTTAGTGG
TGCCTTTGATCGGGAGACTTTTGAGCAATGGAGTGACTCTTCCGCTTTTT
TATTTTTTTGTTTGTGGGATCTACGTAATATGCACATGGCTGGCCTGGAT
AATCCTGAGGTGCCGCGTATCCCATTTTATCTTTTTTATACAAGTGAAGA
GGTTAGGGGCATTATAGATGCTACATTTGTTCGTTGGGATTTCGAAAAGG
ATGATGGTTTGGCTGATGAGAATGCTAGACGGAATGATTTATTGCCGGAA
GCTTATAAATTATCAGCGGAGCATTACCAGGAAGTGTATTATTATGGTTT
TCCCTTTGGTCCTGAGACTCGATTTTAA
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