mRNA_P-littoralis_Contig646.18.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI) HSP 1 Score: 176 bits (447), Expect = 2.090e-48 Identity = 102/254 (40.16%), Postives = 149/254 (58.66%), Query Frame = 1
Query: 1 VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGD-DRWASANVRGFLKSPNGCVSGVLG------LRGHDDV-----LWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQKERTIHLINRDRKKKAAEIARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
+L+ V PC+GV ++H+ ED + A F S+ R AQ LE++P G+ RW +A V G L P+G VSGVLG + GH V W++ C GVAT G V RC C+DF R ++ R A+K +S++ M++ QK+ + D ++ ARLRE + RK+ V+ +QGEALH+ +D ++KEV+ ++LP+ S +R YEDQV+WN++HG AKGFRFHP T+R+AIY
Sbjct: 178 LLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSG-VSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRDFVREALRPRLENASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIY 430
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE) HSP 1 Score: 159 bits (402), Expect = 2.120e-45 Identity = 92/232 (39.66%), Postives = 108/232 (46.55%), Query Frame = 1
Query: 37 GVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGDDR--WASANVRGFLKSPNGCVSGVLGLRGHDDVLWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQKERTIHLINRDRKKKAAEIARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
GVCR H+ ED+ + E FG+V R A R LE P L DR W A+VRG L PNG VSGV+GL G +DVLWSR+C G AT G GV RC CKDFYRR +T RT AAKHTP + TR+ +MST QK DQVRWN+ G +GFR+HP TLRIA+Y
Sbjct: 6 GVCRSHMFEDKDVPLETVAAFGTVVRQALRILEKVPAILQPHDRDRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFATPSYGRTGVPRCTHCKDFYRRGMTPRTAHAAKHTPAKKTRVSEMSTAQK-----------------------------------------------------------------------DQVRWNTKEGKERGFRYHPQTLRIALY 166
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.930e-44 Identity = 108/265 (40.75%), Postives = 153/265 (57.74%), Query Frame = 1
Query: 1 VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGD-DRWASANVRGFLKSPNGCVSGVLG-LRGHD----------DVLWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQK-ERTIHLI-NRDRK--KKAAEI-------ARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
+L+ V PC+GV ++H+ ED + A F S+ R AQR LE++P G+ RW +A V G L P+G VSGVLG + GH V W++ C GVAT G V RC C+ F R ++ R A+K +S++ M++ QK + TI L RD K AA + RLRE + RK+ V+ +QGEALH+ +D ++KEV+ ++LP+ S +R YEDQV+WN++HG AKGFRFHP T+R+AIY
Sbjct: 300 LLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSG-VSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLENASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIY 563
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 168 bits (425), Expect = 5.190e-44 Identity = 103/269 (38.29%), Postives = 151/269 (56.13%), Query Frame = 1
Query: 1 VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGD-DRWASANVRGFLKSPNGCVSGVLG-LRGHD----------DVLWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQK---------ERTIHLINR------DRKKKAAEIARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
+L+ V PC+GV ++H+ ED + A F S+ R AQR LE++P G+ RW +A V G L P+G VSGVLG + GH V W++ C GVAT G V RC C+ F R ++ R A+K +S++ M+ QK +R + ++ D ++ ARLRE + RK+ V+ +QGEALH+ +D ++KEV+ ++LP+ S +R YEDQV+WN++HG AKGFRFHP T+R+AIY
Sbjct: 205 LLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSG-VSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLQNASKAESLKSSKNIYMTRAQKVDVTIVSAPQRVPRITSKLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIY 472
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 9.080e-21 Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 490 RLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
RL++ + ARK+ + N +QG ALHEL +DP+S+ + KLP+DSA+RAI+EDQ+RWN+ ++KGFRFHP TLRIAIY
Sbjct: 12 RLQDRVLAARKESERINDQQGAALHELLLDPESRTIFEKKLPEDSAQRAIFEDQLRWNTRMASSKGFRFHPATLRIAIY 90
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 5.630e-5 Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 1
Query: 643 EDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
+DQV+WN++HG AKGFRFHP T+R+AIY
Sbjct: 303 QDQVKWNTSHGKAKGFRFHPATMRLAIY 330 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig646.18.4 >prot_P-littoralis_Contig646.18.4 ID=prot_P-littoralis_Contig646.18.4|Name=mRNA_P-littoralis_Contig646.18.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=242bp VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDAback to top mRNA from alignment at P-littoralis_Contig646:42719..43856- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig646.18.4 ID=mRNA_P-littoralis_Contig646.18.4|Name=mRNA_P-littoralis_Contig646.18.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=1138bp|location=Sequence derived from alignment at P-littoralis_Contig646:42719..43856- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig646:42719..43856- >mRNA_P-littoralis_Contig646.18.4 ID=mRNA_P-littoralis_Contig646.18.4|Name=mRNA_P-littoralis_Contig646.18.4|organism=Pylaiella littoralis U1_48|type=CDS|length=726bp|location=Sequence derived from alignment at P-littoralis_Contig646:42719..43856- (Pylaiella littoralis U1_48)back to top |