mRNA_P-littoralis_Contig646.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.16.1
Unique NamemRNA_P-littoralis_Contig646.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig646.16.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.900e-32
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    1 GNYARRKVDRLSGTRKGDGYIKSATSAHLERLIDILLHFEKWQNSLQEKN-KELEGGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPR 330
            GNY R KVDR  G++K  G I+S  SA ++RL++IL  F+ WQ++L+ K+    EG +  WKKHFIT +SWFDLRL ILGFVS CR+LF+ P  FQ+DSLSPN RRF+ PR
Sbjct:   65 GNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPR 175
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BLAST of mRNA_P-littoralis_Contig646.16.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.180e-19
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 GNYARRKVDRLSGTRKGDGYIKSATSAHLERLIDILLHFEKWQNSLQEKNKELEGGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSP 303
            GN+ R +  R +G  K  GYI SA  + LE LI+++  F+KW++SLQEK      G+  WKKHFIT  SW D+R+CILGFVS CR+LF+  + F+V    P
Sbjct:  550 GNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTM---GDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRP 647
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BLAST of mRNA_P-littoralis_Contig646.16.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.590e-15
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1 
Query:    4 NYARRKVDRLSGTRKGDGYIKSATSAHLERLIDILLHFEKWQNSLQEKNKELEGGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLS--PN--DRRFIGP---------RKGLDRAQVFAL 363
            N+ R    R +G  K   YI+SA  + LE ++DILL F++W+ SL+ +      G+ AWK HFIT  SW D+R+CILG VS CR++F+  + F++  LS  P+  + R+IG          RK  DRA+  ++
Sbjct:  428 NFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTL---GDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRYIGQASQKNAERKRKANDRARKISI 557
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BLAST of mRNA_P-littoralis_Contig646.16.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.740e-14
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 GNYARRKVDRLSGTRKGDGYIKSATSAHLERLIDILLHFEKWQNSLQEKNKELEGGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLS 300
            GN+ R    R +G  K  GY  SA  + LE L+DIL  F++W+ SL+ +    +     WK HFIT  SW D+R+CILG VS CR+LF++ + F++  LS
Sbjct:   37 GNFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD-----WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLS 131
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BLAST of mRNA_P-littoralis_Contig646.16.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.610e-6
Identity = 35/67 (52.24%), Postives = 40/67 (59.70%), Query Frame = -2 
Query:   54 RHVLTKPRMHRRRSNHDSRVMKCFFHACSPPSSSLFFSWRLFCHFSKCSRMSMRRSRCADVADLMYP 254
            R V TKPRM RR+SN DSRVMKCFFH  SPP      S  +    SK  R+SM  SR    A++ YP
Sbjct:  381 RQVATKPRMVRRKSNQDSRVMKCFFHPRSPPPVGGGNSCSMSFQSSKYLRISMSLSRMGSSAEVTYP 447
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE3.900e-3257.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.180e-1948.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE2.590e-1539.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE6.740e-1443.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE1.610e-652.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:39131..40180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size828
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791346.5739934-UTR-P-littoralis_Contig646:39130..394931680791346.5739934-UTR-P-littoralis_Contig646:39130..39493Pylaiella littoralis U1_48UTRP-littoralis_Contig646 39131..39493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791346.596224-CDS-P-littoralis_Contig646:39493..396261680791346.596224-CDS-P-littoralis_Contig646:39493..39626Pylaiella littoralis U1_48CDSP-littoralis_Contig646 39494..39626 -
1680791346.6088753-CDS-P-littoralis_Contig646:39848..401801680791346.6088753-CDS-P-littoralis_Contig646:39848..40180Pylaiella littoralis U1_48CDSP-littoralis_Contig646 39849..40180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.16.1prot_P-littoralis_Contig646.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 39494..40180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.16.1

>prot_P-littoralis_Contig646.16.1 ID=prot_P-littoralis_Contig646.16.1|Name=mRNA_P-littoralis_Contig646.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
GNYARRKVDRLSGTRKGDGYIKSATSAHLERLIDILLHFEKWQNSLQEKN
KELEGGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLS
PNDRRFIGPRKGLDRAQVFALPREQRDAQESDGAGSQDSVTDRGRHQGFK
REDS*
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mRNA from alignment at P-littoralis_Contig646:39131..40180-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.16.1 ID=mRNA_P-littoralis_Contig646.16.1|Name=mRNA_P-littoralis_Contig646.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1050bp|location=Sequence derived from alignment at P-littoralis_Contig646:39131..40180- (Pylaiella littoralis U1_48)
GGTAACTACGCTAGGCGCAAGGTCGACCGACTATCGGGGACACGAAAGGG
CGACGGGTACATCAAGTCAGCGACGTCCGCGCATCTCGAACGCCTCATCG
ACATCCTGCTGCACTTCGAGAAGTGGCAGAACAGCCTCCAGGAGAAGAAC
AAGGAGCTGGAAGGCGGAGAGCACGCGTGGAAGAAGCACTTCATCACGCG
CGAGTCGTGGTTCGATCTTCGCCTGTGCATCCTCGGTTTCGTGAGCACGT
GTCGTTTCCTTTTCGATCGTCCTGCGATTTTCCAGGTGGACAGCCTTTCG
CCGAACGACCGACGCTTCATCGGACCACGAAACTTGAGCCAGGTTAGTGC
CACTTTTGACATGTCGCGCGCTCGATGCCTCCGCGGAAAACCGGCATAGA
GGAAGTCCCTGTTCGTGTCTGAATTAGGGAAGATACTTTTGATGCTACTG
GCGTGGGATATGGCCACATTTTTATGCGGCATGACTCCGACCTCTCAGCC
ACCCAATGGATTGACAGCCTTTTGCGCTGTCCGCCGTCGACGTCTTGCTG
CAACAGGACTTGATCGAGCACAGGTTTTCGCACTACCGCGGGAACAACGG
GACGCACAGGAATCCGACGGCGCAGGAAGTCAAGACTCGGTCACAGACCG
GGGACGTCATCAGGGCTTTAAACGGGAAGACTCGTAGAAACTCCAACATA
AACGCCAATGCGCGGGTCGGCCAAGACTTCCACGTGGCCGACACCAGCGG
CGAAATCATGATGGCGGTCACAAGAGAGGAAACGAGCAGGCGGATTAGAG
CTGCAAGTAGAAACACGCACAAGTCTGTCTTGTGCCCTAGGTCAGCCAGC
CGGCCACCCTCTTATGCCTCCTTCTGGAAGCGGAGACCAGACCACAACCC
TGAGATGGACCACCCGAACCCCTACAAGTACGGGTTTTGGAGGGATGGCC
CCAAAAGAGGGAAATGGGGAGCGCCGTTGTTCTTGCATTATGTACCCCTC
GAGTCCGCAAAAACTTGCCCGCTAAAGAGAGTTGTCTCATAGTGCCTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:39131..40180-

>mRNA_P-littoralis_Contig646.16.1 ID=mRNA_P-littoralis_Contig646.16.1|Name=mRNA_P-littoralis_Contig646.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig646:39131..40180- (Pylaiella littoralis U1_48)
GGTAACTACGCTAGGCGCAAGGTCGACCGACTATCGGGGACACGAAAGGG
CGACGGGTACATCAAGTCAGCGACGTCCGCGCATCTCGAACGCCTCATCG
ACATCCTGCTGCACTTCGAGAAGTGGCAGAACAGCCTCCAGGAGAAGAAC
AAGGAGCTGGAAGGCGGAGAGCACGCGTGGAAGAAGCACTTCATCACGCG
CGAGTCGTGGTTCGATCTTCGCCTGTGCATCCTCGGTTTCGTGAGCACGT
GTCGTTTCCTTTTCGATCGTCCTGCGATTTTCCAGGTGGACAGCCTTTCG
CCGAACGACCGACGCTTCATCGGACCACGAAAAGGACTTGATCGAGCACA
GGTTTTCGCACTACCGCGGGAACAACGGGACGCACAGGAATCCGACGGCG
CAGGAAGTCAAGACTCGGTCACAGACCGGGGACGTCATCAGGGCTTTAAA
CGGGAAGACTCGTAG
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