mRNA_P-littoralis_Contig646.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.9.1
Unique NamemRNA_P-littoralis_Contig646.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig646.9.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.050e-19
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 VGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVLPRAGYRGRKCNVPQAWFMWY 162
            VGV FKLRLSFLEP+KTRG+WLKDNP S  +VLPRA Y GR C+  +AWF+W+
Sbjct:  108 VGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
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BLAST of mRNA_P-littoralis_Contig646.9.1 vs. uniprot
Match: A0A433N1N0_CHLFR (Uncharacterized protein n=1 Tax=Chlorogloeopsis fritschii PCC 6912 TaxID=211165 RepID=A0A433N1N0_CHLFR)

HSP 1 Score: 49.3 bits (116), Expect = 3.230e-5
Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    4 VGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVL----PRAGYRG--RKCNVPQAWFMW-----YTGEKAHCP 186
            VGV F LRLS+LEP+K RG W  ++  +++ ++    PR  + G  R  +V  AW +W     +  +  HCP
Sbjct:  119 VGVCFLLRLSYLEPTKARGDWFLEHMDNMSNLIIFGQPRPSFTGDRRVDSVTTAWMVWRKDWSWKAKGCHCP 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE1.050e-1969.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433N1N0_CHLFR3.230e-536.11Uncharacterized protein n=1 Tax=Chlorogloeopsis fr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:31832..32047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size218
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons1
Evalue5.29e-06
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size216
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791346.4677033-CDS-P-littoralis_Contig646:31831..320471680791346.4677033-CDS-P-littoralis_Contig646:31831..32047Pylaiella littoralis U1_48CDSP-littoralis_Contig646 31832..32047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.9.1prot_P-littoralis_Contig646.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 31832..32047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.9.1

>prot_P-littoralis_Contig646.9.1 ID=prot_P-littoralis_Contig646.9.1|Name=mRNA_P-littoralis_Contig646.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
HVGVVFKLRLSFLEPSKTRGQWLKDNPHSLTIVLPRAGYRGRKCNVPQAW
FMWYTGEKAHCPIAQQVVFAV*
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mRNA from alignment at P-littoralis_Contig646:31832..32047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.9.1 ID=mRNA_P-littoralis_Contig646.9.1|Name=mRNA_P-littoralis_Contig646.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig646:31832..32047+ (Pylaiella littoralis U1_48)
CATGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCTCGAGCCTTCTAA
AACTCGCGGACAGTGGTTGAAAGACAACCCACATTCTCTCACGATAGTTC
TGCCCCGCGCAGGTTACCGGGGTAGGAAATGTAATGTCCCACAGGCATGG
TTCATGTGGTACACTGGTGAAAAGGCTCATTGTCCTATTGCACAGCAGGT
GGTGTTTGCCGTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:31832..32047+

>mRNA_P-littoralis_Contig646.9.1 ID=mRNA_P-littoralis_Contig646.9.1|Name=mRNA_P-littoralis_Contig646.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig646:31832..32047+ (Pylaiella littoralis U1_48)
CATGTCGGCGTTGTTTTCAAGCTCAGGCTGTCGTTCCTCGAGCCTTCTAA
AACTCGCGGACAGTGGTTGAAAGACAACCCACATTCTCTCACGATAGTTC
TGCCCCGCGCAGGTTACCGGGGTAGGAAATGTAATGTCCCACAGGCATGG
TTCATGTGGTACACTGGTGAAAAGGCTCATTGTCCTATTGCACAGCAGGT
GGTGTTTGCCGTCTGA
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