mRNA_P-littoralis_Contig646.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.33.1
Unique NamemRNA_P-littoralis_Contig646.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:119504..120079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size565
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.9740944-CDS-P-littoralis_Contig646:119503..1195911680791345.9740944-CDS-P-littoralis_Contig646:119503..119591Pylaiella littoralis U1_48CDSP-littoralis_Contig646 119504..119591 -
1680791345.9870853-CDS-P-littoralis_Contig646:119602..1198411680791345.9870853-CDS-P-littoralis_Contig646:119602..119841Pylaiella littoralis U1_48CDSP-littoralis_Contig646 119603..119841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.9969003-UTR-P-littoralis_Contig646:119841..1200791680791345.9969003-UTR-P-littoralis_Contig646:119841..120079Pylaiella littoralis U1_48UTRP-littoralis_Contig646 119842..120079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.33.1prot_P-littoralis_Contig646.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 119504..119841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.33.1

>prot_P-littoralis_Contig646.33.1 ID=prot_P-littoralis_Contig646.33.1|Name=mRNA_P-littoralis_Contig646.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MPPTFFPGDFLTPFSRVRPWHLGHKFDMTGRHTKHFEGGAASFLFARYLR
SPLPPPGAIRVEYVGRRTIPSSKHEKVSAETLGVGHGGFAAFVLLCCKCG
SVWRCARD*
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mRNA from alignment at P-littoralis_Contig646:119504..120079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.33.1 ID=mRNA_P-littoralis_Contig646.33.1|Name=mRNA_P-littoralis_Contig646.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=576bp|location=Sequence derived from alignment at P-littoralis_Contig646:119504..120079- (Pylaiella littoralis U1_48)
TGCATATTTCTTCGCGAAGGAAAAGGTGGCAGAAGGCCGTATTCAAGAGA
GGCCCAGCGGGGCTGACCAGCGTGGTCCTAGCCCCCCCTTCGCGTGACTT
CGGTGCCCGCCGGTGGCGATGTCGACGATGGGCGCGACTTAAGTGTCGGG
GGCGCCCCCACGGGGTAGCGATAAGTTTGTTGTGCGATTTTATCCGCGGG
GTTTTCTTAATTAAGGCACACAGGCTGGTTCGGGGCGAATGCCCCCAACA
TTTTTCCCCGGGGACTTTCTCACGCCGTTTTCACGGGTAAGACCATGGCA
TTTGGGACACAAATTCGATATGACAGGTCGTCATACCAAACATTTCGAGG
GAGGGGCTGCTTCGTTTCTTTTTGCAAGATATCTGAGGTCCCCCCTCCCC
CCCCCTGGGGCCATAAGGGTCGAATACGTAGGACGCCGGACAATCCCGTC
GAGCAAACATGAAAAGGTTAGCGCGGACTGGTGCTGGCGACCCTTGGTGT
GGGACACGGGGGGTTTGCAGCGTTTGTCCTTTTGTGTTGCAAGTGTGGCT
CCGTTTGGCGATGTGCTCGCGATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:119504..120079-

>mRNA_P-littoralis_Contig646.33.1 ID=mRNA_P-littoralis_Contig646.33.1|Name=mRNA_P-littoralis_Contig646.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig646:119504..120079- (Pylaiella littoralis U1_48)
ATGCCCCCAACATTTTTCCCCGGGGACTTTCTCACGCCGTTTTCACGGGT
AAGACCATGGCATTTGGGACACAAATTCGATATGACAGGTCGTCATACCA
AACATTTCGAGGGAGGGGCTGCTTCGTTTCTTTTTGCAAGATATCTGAGG
TCCCCCCTCCCCCCCCCTGGGGCCATAAGGGTCGAATACGTAGGACGCCG
GACAATCCCGTCGAGCAAACATGAAAAGGTTAGCGCGGAGACCCTTGGTG
TGGGACACGGGGGGTTTGCAGCGTTTGTCCTTTTGTGTTGCAAGTGTGGC
TCCGTTTGGCGATGTGCTCGCGATTGA
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