mRNA_P-littoralis_Contig1166.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1166.21.1
Unique NamemRNA_P-littoralis_Contig1166.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.830e-57
Identity = 93/141 (65.96%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    1 DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDVS-----------------LASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWLQANPPAMCVFL 372
            DRY TSPEAV ALL AV + GCVLDMCGGPGDA+ATRL  TC+V+TND+S                 LASF  DFL A  G++ DWVLTSP YK AL  VK+A+S+A KGVALKLPL+FLEPCADRGGWLQANPPA+CVF 
Sbjct:   81 DRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.940e-55
Identity = 89/137 (64.96%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDVS------------LASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWLQANPPAMCVFLR 375
            DRY TSPEA+ A L AV ITGCVLDMCGGP DAVATRL  TCE+LTNDVS            L SFP+DFL A  GK+ +WV TSP Y  AL  VKAAMS+A KGV  K+ + FLEPCAD GGWLQ NPP++CVFLR
Sbjct:   28 DRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLR 164          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 5.120e-54
Identity = 88/136 (64.71%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDV------------SLASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWLQANPPAMCVFL 372
            DRY TSP  + ALL  V I+GCVLDMCGG  DAVA RL  TC+VLTNDV            S ASF DDFL A  G+Q DW++TSP YK AL  VKAA++VAKKGVALKLPL+FLEPCADR GWLQANPPA+C+ +
Sbjct:   69 DRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMM 204          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.440e-52
Identity = 89/137 (64.96%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDVS------------LASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWLQANPPAMCVFLR 375
            DRY T PEAV  L +AV I GCVLDMCGGP DAVA     TCEVLTNDVS            L SF D+F  A  GKQ DWV+TSP YK A+  VKAA++VA KGVALKLPL+FLEPCADRGGWL  NPPA+C+FLR
Sbjct:  127 DRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLR 263          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.950e-44
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   76 MCGGPGDAVATRLEGTCEVLTNDVS------------LASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWLQANPPAMCVFLR 375
            MCGGP DAVATRL  TCE+LTNDVS            L  FP+DFL A  GK+ +WV+TSP Y  AL  VKAAMS+A KGVA K+P+ FLEPCADRGGWLQ NPP++CVFLR
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLR 112          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 8.720e-40
Identity = 82/143 (57.34%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    1 DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDVS--LAS----FPDDFLNAT----------DG--KQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWLQANPPAMCVFLR 375
            DRY TS  AV ALLDAV+++G VLDMCGGP DAVA +L  TCEV+TNDVS  L+S     PD  L+A+          DG  +Q + V+ SP YK A+  VKAA+ VAK GVALK  L+FLEPC DR  WL+ANPP +CVFLR
Sbjct:  117 DRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLR 259          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.560e-37
Identity = 71/111 (63.96%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDVS------------LASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLP 297
            DRY TSPEAV ALL AV ITGC+LD+CGGP DAVATRL  TCEVLTNDVS            L SFPDDF  A+ GK+ DWV+TSP YK AL  VKAAMS+A +GV +  P
Sbjct:   94 DRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.100e-35
Identity = 64/100 (64.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   76 MCGGPGDAVATRLEGTCEVLTNDVSLASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWLQANPPAMCVFLR 375
            MCGGP DAVA    GTCEVLTNDVS    P     A  GKQ DWV+TSP YK A+  VKA ++VA KGVAL+LPL+F +PCADRG WL  NPP MC FLR
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSP-----AHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLR 95          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: D7G7B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.930e-34
Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   76 MCGGPGDAVATRLEGTCEVLTNDVS------------LASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEPCADRGGWL 339
            MCGGP DAVATRL  TCE+LTNDVS            L  FP++FL A  GK+ +WV+ SP Y  AL  VKAAMS+A KGVA K+P+ FLEPCADRGGWL
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLELFPENFLAAYSGKRPEWVVISPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWL 100          
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.610e-31
Identity = 63/105 (60.00%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDVSLASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPLTFLEP 315
            DRY TSP AV AL  AV ITGCVLDMCGGP DAVA    GTC  L  D SL  FPD+F+    GK+ DWV+TSP YK ++  V AA++VA KGVALKL L    P
Sbjct:   46 DRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTCTNL--DASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU4_ECTSI3.830e-5765.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Y0_ECTSI1.940e-5564.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K049_9PHAE5.120e-5464.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE3.440e-5264.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.950e-4464.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHQ4_9PHAE8.720e-4057.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD58_9PHAE1.560e-3763.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K929_9PHAE1.100e-3564.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7B0_ECTSI1.930e-3461.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1N5_9PHAE7.610e-3160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1166contigP-littoralis_Contig1166:61012..62137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1208583.COMX_08825
Model size375
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000225
EggNOG OGsCOG0827@1|root,COG0827@2|Bacteria,1PN16@1224|Proteobacteria,2VC5K@28211|Alphaproteobacteria,2JXXM@204441|Rhodospirillales
DescriptionDNA restriction-modification system
Cds size375
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.999674-CDS-P-littoralis_Contig1166:61011..612371680789484.999674-CDS-P-littoralis_Contig1166:61011..61237Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 61012..61237 -
1680789485.0111392-CDS-P-littoralis_Contig1166:61988..621371680789485.0111392-CDS-P-littoralis_Contig1166:61988..62137Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 61989..62137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1166.21.1prot_P-littoralis_Contig1166.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1166 61012..62137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1166.21.1

>prot_P-littoralis_Contig1166.21.1 ID=prot_P-littoralis_Contig1166.21.1|Name=mRNA_P-littoralis_Contig1166.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
DRYRTSPEAVGALLDAVHITGCVLDMCGGPGDAVATRLEGTCEVLTNDVS
LASFPDDFLNATDGKQRDWVLTSPLYKHALVLVKAAMSVAKKGVALKLPL
TFLEPCADRGGWLQANPPAMCVFLR
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mRNA from alignment at P-littoralis_Contig1166:61012..62137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1166.21.1 ID=mRNA_P-littoralis_Contig1166.21.1|Name=mRNA_P-littoralis_Contig1166.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1126bp|location=Sequence derived from alignment at P-littoralis_Contig1166:61012..62137- (Pylaiella littoralis U1_48)
GACCGCTACCGGACTTCGCCTGAGGCGGTGGGCGCTTTGCTGGATGCTGT TCACATCACGGGGTGTGTCCTAGACATGTGCGGCGGGCCTGGAGACGCTG TCGCCACCCGGCTAGAAGGTACGTGCGAAGTCCTCACGAACGACGTGAGG TCGAGGTAAAGAGGTTTGTTTTGGCGAGAAAAAGCGCCGTGATGGAGGTG TATTTATAGAGCGCAGAACTGCCCCGTTTGTGGAGGCGCTGGGCGACATG AGATAAATTTGGTCGTCGACGGGAATAGCGAACGACATGTCGTCGGAGGA TAGTAGGAAAAATACAGAAACTTGAGATGTTCTTTGCTGCCATACACGGC ATTTATTTCCCTCCAAGTGTTACTACCGTTCTCTCGCCGTCAACTTTCGC AGTTTTGTACCCTCAGTCCGCGTGTCTTGATACTGCTGTACAATATTTTT TGTTTGCACCTCTTTTTTTTTCAACCGGGAACGTATTTGGACACGCTGTT GTTGTTTCCTCGCCCCACCAAATGGCATAAGAATGCGCTACCAGGCAAAT GACTGGTATTCGCTTGCAAGTAAAGGGCAGTCCCGTTCACCTAAACGAAT TCGACGAGTGTTTCATCGGAGCTCGAGTAGCCAATGGTCCTACACTCGGC AGCGAATTGACAACACCCCCGCCCAAGAACTCCTCGACACGACGCACGTG GTCCTTTTGCCATGACCCCTACCCCATTCGAAACTCAGGCATGGGGATAC ACCGAGTGTTGAAAAATCTCCCCAGATTCTCGATACAGCTGCTTGTGCGT AAGTTTCTTTGCTTTGTGACACCCCTCGCACTTGCCCGGCTGGTTCTTTT CCTGTGTATCCCCATGCAAGTTTGTCTCCGGGTACGAACCTGGATGCAAG CCTAGCGTCATTCCCGGACGACTTCTTGAATGCTACTGACGGTAAACAAC GTGACTGGGTCCTGACAAGCCCCCTGTACAAGCATGCTCTAGTATTGGTG AAGGCCGCCATGTCCGTGGCGAAGAAAGGTGTAGCGCTCAAACTGCCGCT AACTTTTCTGGAACCCTGCGCTGACCGTGGAGGGTGGCTCCAAGCAAACC CCCCAGCTATGTGTGTGTTTTTACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1166:61012..62137-

>mRNA_P-littoralis_Contig1166.21.1 ID=mRNA_P-littoralis_Contig1166.21.1|Name=mRNA_P-littoralis_Contig1166.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1166:61012..62137- (Pylaiella littoralis U1_48)
GACCGCTACCGGACTTCGCCTGAGGCGGTGGGCGCTTTGCTGGATGCTGT
TCACATCACGGGGTGTGTCCTAGACATGTGCGGCGGGCCTGGAGACGCTG
TCGCCACCCGGCTAGAAGGTACGTGCGAAGTCCTCACGAACGACGTGAGC
CTAGCGTCATTCCCGGACGACTTCTTGAATGCTACTGACGGTAAACAACG
TGACTGGGTCCTGACAAGCCCCCTGTACAAGCATGCTCTAGTATTGGTGA
AGGCCGCCATGTCCGTGGCGAAGAAAGGTGTAGCGCTCAAACTGCCGCTA
ACTTTTCTGGAACCCTGCGCTGACCGTGGAGGGTGGCTCCAAGCAAACCC
CCCAGCTATGTGTGTGTTTTTACGG
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