mRNA_P-littoralis_Contig646.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.10.1
Unique NamemRNA_P-littoralis_Contig646.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:32467..33409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.8485522-UTR-P-littoralis_Contig646:32466..325781680791345.8485522-UTR-P-littoralis_Contig646:32466..32578Pylaiella littoralis U1_48UTRP-littoralis_Contig646 32467..32578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.859839-CDS-P-littoralis_Contig646:32578..327071680791345.859839-CDS-P-littoralis_Contig646:32578..32707Pylaiella littoralis U1_48CDSP-littoralis_Contig646 32579..32707 -
1680791345.8794148-CDS-P-littoralis_Contig646:33280..334091680791345.8794148-CDS-P-littoralis_Contig646:33280..33409Pylaiella littoralis U1_48CDSP-littoralis_Contig646 33281..33409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.10.1prot_P-littoralis_Contig646.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 32579..33409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.10.1

>prot_P-littoralis_Contig646.10.1 ID=prot_P-littoralis_Contig646.10.1|Name=mRNA_P-littoralis_Contig646.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
AIVKPHFLLVVHRIPKWVRSLCSTLLGPAFSSDYAGDGPTPPLVRCSSEF
RGRALVCSATWLEGGGLCGRATDAEVERTPGVSHI*
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mRNA from alignment at P-littoralis_Contig646:32467..33409-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.10.1 ID=mRNA_P-littoralis_Contig646.10.1|Name=mRNA_P-littoralis_Contig646.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=943bp|location=Sequence derived from alignment at P-littoralis_Contig646:32467..33409- (Pylaiella littoralis U1_48)
GCAATCGTGAAGCCTCATTTTCTCCTGGTGGTTCATCGGATACCGAAGTG
GGTGCGATCTTTGTGTAGCACGCTGCTCGGCCCAGCGTTCTCGTCGGATT
ACGCCGGAGACGGACCAACACCGCCCTTGGTGAGCTGTATGGATGTGTTG
TTTGTAAGGAGCGTTTGAAAAATTCCGAAAAAAATGTTGCAATTCGCGAC
AAAATACAAACAGCGACAGGCACAGGGCAGGTAGGTGAAGAGGGTATTTG
TTTCTTGTTTGGGAGGAAGGTCCTGACAACGTGTATTCGATTTGGTGTGG
TGACGATATGCATGTCGCGCTTGCCGCTCCACAGCCCAAAACCTTAGACA
TGCCCGACAGATCATAGGCACATGTCCGTGCTCCTCCAGTTGGCAGAGCT
TCACGTGGTTTGTTCAGCGATTTCTGCGCGAAAACGTGAACCGCTCTCCT
GCGGTGGAAACGTCAATGGATATGGTTTTGTACGGCAGCATCAGTAGGAG
CGTGTTGCAAGTTAACATATCTTGTCCAGGTGCGTACAACAAGTGACGCC
CTCAAACCTTAGCCATGTTCGATGGACGATACACCGATGTCTCTAGGGGG
GCAATTCGCTCCGAGTGATGTATACCGCATGCCTTACTGTTGACAATCAA
CGAACTGCTGCGGTCCCTTCCGTTTGTTTTTGATCATATCCCGTTCTTGA
AGGTCAGGTGCAGCTCAGAATTTCGAGGGAGGGCGCTCGTGTGCTCGGCG
ACATGGTTGGAGGGGGGGGGATTGTGTGGACGGGCCACAGACGCTGAAGT
GGAACGTACCCCGGGTGTGTCTCATATTTGATTCTTGGTAATGGTGGTTT
TTTTTCTATAACGAGAATAAGTCTCGGCTCTCCCATTCACTTGTTGCAAT
ACATGATTGCATGTTTCTACGTCGGGGAGGAGGGACAAGAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:32467..33409-

>mRNA_P-littoralis_Contig646.10.1 ID=mRNA_P-littoralis_Contig646.10.1|Name=mRNA_P-littoralis_Contig646.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig646:32467..33409- (Pylaiella littoralis U1_48)
GCAATCGTGAAGCCTCATTTTCTCCTGGTGGTTCATCGGATACCGAAGTG
GGTGCGATCTTTGTGTAGCACGCTGCTCGGCCCAGCGTTCTCGTCGGATT
ACGCCGGAGACGGACCAACACCGCCCTTGGTCAGGTGCAGCTCAGAATTT
CGAGGGAGGGCGCTCGTGTGCTCGGCGACATGGTTGGAGGGGGGGGGATT
GTGTGGACGGGCCACAGACGCTGAAGTGGAACGTACCCCGGGTGTGTCTC
ATATTTGA
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