mRNA_P-littoralis_Contig645.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig645.47.1
Unique NamemRNA_P-littoralis_Contig645.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig645.47.1 vs. uniprot
Match: A0A6H5JTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.220e-13
Identity = 34/69 (49.28%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 LFSAPNRISVLAREIATIKQTESQSVDMYALKVMQAGTRLIAEATRSAPPNTSPHEHAWDVFLTATFEN 207
            LF+  NRI++LARE  T++   +++VD++AL+V +A +RL+AEA R+AP N S HEHA+   + A+FEN
Sbjct:  289 LFAPANRIALLAREAMTLQAKPNETVDVFALRVSRAYSRLLAEAERTAPANVSAHEHAFSKAMIASFEN 357
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig645.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTA5_9PHAE2.220e-1349.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig645contigP-littoralis_Contig645:156857..157065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size211
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.7653286-CDS-P-littoralis_Contig645:156858..1570651680791345.7653286-CDS-P-littoralis_Contig645:156858..157065Pylaiella littoralis U1_48CDSP-littoralis_Contig645 156859..157065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig645.47.1prot_P-littoralis_Contig645.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig645 156859..157065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig645.47.1

>prot_P-littoralis_Contig645.47.1 ID=prot_P-littoralis_Contig645.47.1|Name=mRNA_P-littoralis_Contig645.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
LFSAPNRISVLAREIATIKQTESQSVDMYALKVMQAGTRLIAEATRSAPP
NTSPHEHAWDVFLTATFEN
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mRNA from alignment at P-littoralis_Contig645:156857..157065-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig645.47.1 ID=mRNA_P-littoralis_Contig645.47.1|Name=mRNA_P-littoralis_Contig645.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=209bp|location=Sequence derived from alignment at P-littoralis_Contig645:156857..157065- (Pylaiella littoralis U1_48)
CTCTTTTCAGCACCGAACCGTATTTCAGTGTTGGCCCGCGAAATTGCAAC
CATCAAGCAAACTGAATCACAATCAGTAGACATGTACGCTCTGAAGGTCA
TGCAAGCCGGCACACGATTAATTGCTGAAGCCACCCGTTCTGCTCCGCCC
AACACTAGCCCTCACGAACATGCTTGGGATGTGTTTCTCACGGCAACTTT
CGAAAATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig645:156857..157065-

>mRNA_P-littoralis_Contig645.47.1 ID=mRNA_P-littoralis_Contig645.47.1|Name=mRNA_P-littoralis_Contig645.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig645:156857..157065- (Pylaiella littoralis U1_48)
CTCTTTTCAGCACCGAACCGTATTTCAGTGTTGGCCCGCGAAATTGCAAC
CATCAAGCAAACTGAATCACAATCAGTAGACATGTACGCTCTGAAGGTCA
TGCAAGCCGGCACACGATTAATTGCTGAAGCCACCCGTTCTGCTCCGCCC
AACACTAGCCCTCACGAACATGCTTGGGATGTGTTTCTCACGGCAACTTT
CGAAAAT
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