mRNA_P-littoralis_Contig645.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig645.2.1
Unique NamemRNA_P-littoralis_Contig645.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig645.2.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.840e-7
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 QGKYAEVEPLIERCQTIDEKILGPEHPWLVTILLNRAKLLIAK 129
            QGKY E EPL ER Q I EK+LG EHP + + L NR +LL A+
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
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BLAST of mRNA_P-littoralis_Contig645.2.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.610e-6
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 QGKYAEVEPLIERCQTIDEKILGPEHPWLVTILLNRAKLLI 123
            QGKYAE EPL E+ Q I EK+LGPEHP + T+L  R   LI
Sbjct: 1279 QGKYAEPEPLYEQSQAITEKVLGPEHPDVATVLKKRCCWLI 1319
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BLAST of mRNA_P-littoralis_Contig645.2.1 vs. uniprot
Match: D7FWM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM6_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.170e-5
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 QGKYAEVEPLIERCQTIDEKILGPEHPWLVTILLNR 108
            QGKY E EPL +R Q   EK+LGPEHP + T+L N+
Sbjct:   45 QGKYEEAEPLYDRSQATPEKVLGPEHPDVATVLKNK 80
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BLAST of mRNA_P-littoralis_Contig645.2.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.700e-5
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 QGKYAEVEPLIERCQTIDEKILGPEHPWLVTIL 99
            QGKYAE E L  RCQ I+EK+LGPEHP L + L
Sbjct:  339 QGKYAEAEALYVRCQAIEEKVLGPEHPSLASTL 371
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BLAST of mRNA_P-littoralis_Contig645.2.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.710e-5
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 QGKYAEVEPLIERCQTIDEKILGPEHPWLVTILLNRAKLL 120
            Q KY E EPL ER Q + EK+LGPEHP +   L NRA LL
Sbjct:  651 QRKYIEAEPLHERAQAMQEKVLGPEHPGVAQSLNNRADLL 690
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig645.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K3K8_9PHAE4.840e-758.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIH9_9PHAE2.610e-660.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWM6_ECTSI1.170e-558.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXH0_ECTSI1.700e-566.67Tetratricopeptide repeat containing protein n=1 Ta... [more]
D8LGG5_ECTSI1.710e-560.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig645contigP-littoralis_Contig645:20568..21511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G722
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size207
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.48e-08
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide repeat containing protein
Ec32 orthologEc-15_004740.1
DescriptionADP binding
Cds size207
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.4061778-CDS-P-littoralis_Contig645:20567..206961680791345.4061778-CDS-P-littoralis_Contig645:20567..20696Pylaiella littoralis U1_48CDSP-littoralis_Contig645 20568..20696 +
1680791345.418653-CDS-P-littoralis_Contig645:21433..215111680791345.418653-CDS-P-littoralis_Contig645:21433..21511Pylaiella littoralis U1_48CDSP-littoralis_Contig645 21434..21511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig645.2.1prot_P-littoralis_Contig645.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig645 20568..21511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig645.2.1

>prot_P-littoralis_Contig645.2.1 ID=prot_P-littoralis_Contig645.2.1|Name=mRNA_P-littoralis_Contig645.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
QGKYAEVEPLIERCQTIDEKILGPEHPWLVTILLNRAKLLIAKGKYAEAE
PLYERCQAIQERALGPDHP
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mRNA from alignment at P-littoralis_Contig645:20568..21511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig645.2.1 ID=mRNA_P-littoralis_Contig645.2.1|Name=mRNA_P-littoralis_Contig645.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=944bp|location=Sequence derived from alignment at P-littoralis_Contig645:20568..21511+ (Pylaiella littoralis U1_48)
CAGGGCAAGTACGCTGAGGTGGAGCCCCTTATTGAGCGGTGCCAGACGAT
AGACGAGAAGATTCTAGGCCCAGAGCACCCGTGGCTCGTCACGATACTCC
TCAACAGAGCCAAGTTGCTGATAGCGAAGGTAAAAATAATGAGAAGTCCG
GGACGTTCCACACCACCATGTTTGATGTATCGCTCCGGCTCCTCGTAAAT
CGCTACGGTATGTCACCACAAGGCAATGTTTGCTAAACACGGCGAGTTGG
AAGACGTAGGGCCTCTCAATCTCCGAGTCAGTGCTGTCGATTGCCTCCCT
TGCCGGGTACAGATCGGACCATGGGCTGCAGGACCGATCGTTGTTGGAAA
TACCTTCTTCAGCGCTTACTCCTCACAGGCTTCTATCCAAGGTTTGATCA
CTCTCCCATATCGTGTTTCTTTCGCCTTCCAGGGCAAGTATGCTGAGGCG
GAGCCCCTTATTGAGCGGTGTCAGACGATAGACGAGAAGGTTCTACAGCA
TCCGTGGTTCGCCGCGACGCTTAACACCCGAGCCGAGTTGCTGAGAGTGC
AGGTGGAGTTCGCAAGAAAAGTTGAGGACGTTCCACACGGCCATGTTTCA
ATCGTTGCGATAGTTTCAAATGAAGTGCTACATCACAGTACTCCACCTTT
TGCTAAACAGGGCAAGTTGGAAGGAGGTGTACCATCTCAATCTTCGAGGT
ATTTTCAAAGGCGGCAAAATGCTGGATCTAGAAGATACAGATCGGGCCGT
GGGACTAAGGAATTGATCGCCGTTGTTGAGACAATATCAAGCGGTTGCTC
CATAGGAGTAAGCGAAGGTATTCTAGGCTTGATCCCACTCCTATACGTGT
TTCTCTTCCCTTCCAGGGTAAGTATGCTGAGGCGGAGCCTCTGTATGAGC
GATGTCAGGCAATACAAGAGAGGGCTCTAGGCCCAGATCACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig645:20568..21511+

>mRNA_P-littoralis_Contig645.2.1 ID=mRNA_P-littoralis_Contig645.2.1|Name=mRNA_P-littoralis_Contig645.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig645:20568..21511+ (Pylaiella littoralis U1_48)
CAGGGCAAGTACGCTGAGGTGGAGCCCCTTATTGAGCGGTGCCAGACGAT
AGACGAGAAGATTCTAGGCCCAGAGCACCCGTGGCTCGTCACGATACTCC
TCAACAGAGCCAAGTTGCTGATAGCGAAGGGTAAGTATGCTGAGGCGGAG
CCTCTGTATGAGCGATGTCAGGCAATACAAGAGAGGGCTCTAGGCCCAGA
TCACCCG
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