mRNA_P-littoralis_Contig1166.20.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.290e-71 Identity = 193/576 (33.51%), Postives = 244/576 (42.36%), Query Frame = 1
Query: 307 VFVDLIANALCTGADSSDGGGRGVPVSIFGDGACFPNALALGVFGASCETPDAARELSLAVRVAIVRAAVRDMPEFIGDQEYGDFYCTLQAYDAKFVDAAFELTCYVDGLLIESEARVLDLLAILAIA------------------GASMKGVEGGASF------------------GGKWSK---------------------------------------------------------------------------QLMGPLTPSG--------------------------------------VEPTIYLSMSVARP-----DHSFTN-ID--EFTETTRRVE------PGIFRHKPPIVC*PVPGHRVDPIVNPLPP------------------------------GGGSVDETRQWVAAIRERTSEKWYGVGNIKNAAPNYDVSELCVLRMSWLAEYWLSILSVAAIDLEVSHSYPIQVSIWDDKGYLENPEVEGGYLMLLHRSPKVTVWPGGMETIKCRCSSVPGK--GQCTTCVCVTKGYGSCSELCRCRLAWCEEQITGSERHRNRS 1449
+ VD A AL ADS+DGG RG + + AC+ NA+ALG GA +TPD A ELSL+VRVA++RAA+ + FI YG FYCTLQAY AK V+ A+ L +L ES ARVL LLA+ +A G M+ G F GK+ + GPLT G + P I + V R D + N ID E E ++E G+ R P I + G P ++ L G G VD+TR+WV AI+ERT+EKWYG GN+ AAPNYD +ELCVLRMSWL EYWLS++ + + S YPIQVS WD Y+E EVEGG +ML+ R PKVT+WPGG ET+KC CSS K G CT+CVC+TKG+G CSELC+C+L EE+ SE +RS
Sbjct: 1 MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGVGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGYSTPEVLTESVARVLYLLAVREVACEFSDSQQAAIPWTAQAFGVEMRCFHPGQDFLKNRQHHDGVFSVLCQYIRGKFESIRAKKSNNTAMTPWEDCLGNLRLLIDGEPILSQDFLETLHFKSWHNDKDSLIIGDEGNGIGEGELQALHHAYLVGRTAGPLTGEGGGSSSENNQEGQGETPPVRVEVVSIHRDVWVAALLAYALYPHIRIVRVVVRQQSGLNDEAVVNCIDVLELFEALAKMENWPHSFTGLQRCLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTELIEDGEGEVDDTRRWVEAIQERTAEKWYGAGNLSKAAPNYDAAELCVLRMSWLVEYWLSVVPSDSPGSDASARYPIQVSKWDGMWYIEKTEVEGGCMMLMRRFPKVTIWPGGFETVKCMCSSAKRKRGGHCTSCVCITKGFGHCSELCKCKLKCREEETEESEMQEDRS 576
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE) HSP 1 Score: 216 bits (549), Expect = 7.630e-57 Identity = 103/170 (60.59%), Postives = 127/170 (74.71%), Query Frame = 1
Query: 919 PGHRVDPIVNPLPPGGGSVDETRQWVAAIRERTSEKWYGVGNIKNAAPNYDVSELCVLRMSWLAEYWLSILSVAAIDLEVSHSYPIQVSIWDDKGYLENPEVEGGYLMLLHRSPKVTVWPGGMETIKCRCSSVPGKGQCTTCVCVTKGYGSCSELCRCRLAWCEEQITGS 1428
PGH+V+PIV+P G+VDET+ WV AI RTSE YG G ++ AAPNYDV +LCVLRM WL EYWLSI+ V+A E S +YPI V W++KGYL++PEV+G MLL R PKVT+WPGG+ET+KCRCS VPG+GQCT+CVC KG CSELC+C+ A C E+ S
Sbjct: 661 PGHQVEPIVDPKK-RNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKG-SICSELCKCKRACCVEETNPS 828
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.590e-56 Identity = 114/223 (51.12%), Postives = 140/223 (62.78%), Query Frame = 1
Query: 274 LNAFEGPLRREVFVDLIANALCTGADSSDGGGRGVPVSIFGDGACFPNALALGVFGASCETPDAARELSLAVRVAIVRAAVRDMPEFIGDQEYGDFYCTLQAYDAKFVDAAFELTCYVDGLLIESEARVLDLLAILAIAG---------------------------ASMKGVEGGASFGGKWSKQLMGPLTPSGVEPTIYLSMSVARPDHSFTNIDEFTETT 861
L +EG LRR + VD A L G + +DGGGRGVPV + G+GAC+ NA+ LG+FG C TPD A LSL+VRVA++RAA+ EFI EYG FYCTLQAY AK V AA+ L C +L ES +RVL LLA+ +AG SMK VEGGASF GKWSK+L+GPL P+GVEPTIYL+M + +F++I EFTETT
Sbjct: 61 LPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRGVPVKVRGNGACYFNAVPLGIFGTKCNTPDEALGLSLSVRVAVIRAAIVHFEEFISGPEYGGFYCTLQAYSAKEVKAAWSLGCDTPEVLTESVSRVLYLLAVREVAGEFSDSQQAAMPWTAQAFGMKMRCFHPGGSMKHVEGGASFAGKWSKELIGPLKPAGVEPTIYLTMCITSHKQAFSSIHEFTETT 283
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE) HSP 1 Score: 216 bits (549), Expect = 2.990e-56 Identity = 103/170 (60.59%), Postives = 127/170 (74.71%), Query Frame = 1
Query: 919 PGHRVDPIVNPLPPGGGSVDETRQWVAAIRERTSEKWYGVGNIKNAAPNYDVSELCVLRMSWLAEYWLSILSVAAIDLEVSHSYPIQVSIWDDKGYLENPEVEGGYLMLLHRSPKVTVWPGGMETIKCRCSSVPGKGQCTTCVCVTKGYGSCSELCRCRLAWCEEQITGS 1428
PGH+V+PIV+P G+VDET+ WV AI RTSE YG G ++ AAPNYDV +LCVLRM WL EYWLSI+ V+A E S +YPI V W++KGYL++PEV+G MLL R PKVT+WPGG+ET+KCRCS VPG+GQCT+CVC KG CSELC+C+ A C E+ S
Sbjct: 1155 PGHQVEPIVDPKK-RNGAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNKGYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKG-SICSELCKCKRACCVEETNPS 1322
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE) HSP 1 Score: 200 bits (508), Expect = 1.690e-55 Identity = 116/230 (50.43%), Postives = 141/230 (61.30%), Query Frame = 1
Query: 274 LNAFEGPLRREVFVDLIANALCTGADSSDGGGRGVPVSIFGDGACFPNALALGVFGASCETPDAARELSLAVRVAIVRAAVRDMPEFIGDQEYGDFYCTLQAYDAKFVDAAFELTCYVDGLLIESEARVLDLLAILAIAG---------------------------ASMKGVEGGASFGGKWSKQLMGPLTPSGVEPTIYLSMSVARPDHSFTNIDEFTETTRRVEPGI 882
L +EG LRR + VD A AL ADS+DGG RG + + AC+ NA+ALG FGA +TPD A ELSL+VRVA++RAA+ + FI YG FYCTLQAY AK V+ A+ L C +L ES ARVL LLA+ +AG SMK VEGGASF GKWSK+L+ PL PSGVE TIYL+MS+ H+F +I EFTETTRR E G+
Sbjct: 67 LPGYEGLLRRPMLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGCSKPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWIAQAFGVKMRCFHPGGSMKDVEGGASFAGKWSKELVSPLNPSGVESTIYLTMSITSHKHAFRSIHEFTETTRRWERGV 296
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5L1Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q2_9PHAE) HSP 1 Score: 135 bits (341), Expect = 2.560e-34 Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1
Query: 1096 MSWLAEYWLSILSVAAIDLEVSHSYPIQVSIWDDKGYLENPEVEGGYLMLLHRSPKVTVWPGGMETIKCRCSSVPGK--GQCTTCVCVTKGYGSCSELCRCRLAWCEEQITGSER 1434
MSWL +YWLS++ + +VS YPIQV D GY+EN EVEGG +ML+ R PKVT+WPGG ET++C+CSS K G+CT+CVC+TKG G CSELC+C+L C E+ T + R
Sbjct: 1 MSWLVKYWLSVVPSGSPGSDVSARYPIQVPKRDGMGYIENTEVEGGCMMLMRRFPKVTIWPGGFETVRCKCSSGKRKRGGRCTSCVCITKGSGQCSELCKCKLT-CREEETEAGR 114
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE) HSP 1 Score: 127 bits (319), Expect = 2.920e-30 Identity = 82/191 (42.93%), Postives = 104/191 (54.45%), Query Frame = 1
Query: 307 VFVDLIANALCTGADSSDGGGRGVPVSIFGDGACFPNALALGVFGASCETPDAARELSLAVRVAIVRAAVRDMPEFIGDQEYGDFYCTLQAYDAKFVDAAFELTCYVDGLLIESEARVLDLLAILAIAGASMKGVEGGASFGGKWSKQLMGPLTPSGVEPTIYLSMSVARPDHSFTNIDEFTETTRRVEPG 879
+ VD A AL ADS+DGG RG + + AC+ NA+ALG FGAS TP+ E +V + AVR++ D + T QA+ K + C+ G SMK VEGGASF GKWSK+L+GPL PSGVEPTIYL+MS+ H+F++I EFTETTRR E G
Sbjct: 1 MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGAS--TPEVLTE---SVARVLYLLAVREVAGEFSDSQQAAIPWTAQAFGVK-------MRCFHPG--------------------GSMKDVEGGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERG 159
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Match: A0A6H5JTC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC3_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 3.090e-21 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 967 GSVDETRQWVAAIRERTSEKWYGVGNIKNAAPNYDVSELCVLRMSWLAEYWLSILSVAAIDLEVSHSYPI 1176
G VD+TRQWV AI+ RT+EKWYG GN+ AAPNYD +ELCV++MSWL +YWLS++ + +VS YPI
Sbjct: 24 GEVDDTRQWVQAIQGRTAEKWYGAGNLSKAAPNYDATELCVVQMSWLVKYWLSVVPSGSPGSDVSARYPI 93 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1166.20.1 >prot_P-littoralis_Contig1166.20.1 ID=prot_P-littoralis_Contig1166.20.1|Name=mRNA_P-littoralis_Contig1166.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp MSWLAEYWLSILSVAAIDLEVSHSYPIQVSIWDDKGYLENPEVEGGYLMLback to top mRNA from alignment at P-littoralis_Contig1166:56737..60130+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1166.20.1 ID=mRNA_P-littoralis_Contig1166.20.1|Name=mRNA_P-littoralis_Contig1166.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3394bp|location=Sequence derived from alignment at P-littoralis_Contig1166:56737..60130+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1166:56737..60130+ >mRNA_P-littoralis_Contig1166.20.1 ID=mRNA_P-littoralis_Contig1166.20.1|Name=mRNA_P-littoralis_Contig1166.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig1166:56737..60130+ (Pylaiella littoralis U1_48)back to top |