mRNA_P-littoralis_Contig645.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig645.25.1
Unique NamemRNA_P-littoralis_Contig645.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig645.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig645contigP-littoralis_Contig645:90042..90695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.2953606-UTR-P-littoralis_Contig645:90041..901661680791345.2953606-UTR-P-littoralis_Contig645:90041..90166Pylaiella littoralis U1_48UTRP-littoralis_Contig645 90042..90166 +
1680791345.334707-UTR-P-littoralis_Contig645:90687..906951680791345.334707-UTR-P-littoralis_Contig645:90687..90695Pylaiella littoralis U1_48UTRP-littoralis_Contig645 90688..90695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.3069017-CDS-P-littoralis_Contig645:90166..903011680791345.3069017-CDS-P-littoralis_Contig645:90166..90301Pylaiella littoralis U1_48CDSP-littoralis_Contig645 90167..90301 +
1680791345.3215435-CDS-P-littoralis_Contig645:90633..906871680791345.3215435-CDS-P-littoralis_Contig645:90633..90687Pylaiella littoralis U1_48CDSP-littoralis_Contig645 90634..90687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig645.25.1prot_P-littoralis_Contig645.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig645 90167..90687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig645.25.1

>prot_P-littoralis_Contig645.25.1 ID=prot_P-littoralis_Contig645.25.1|Name=mRNA_P-littoralis_Contig645.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MVLVMWPWATPTATWTQTRRTCLGRHHHQRRKDGMEIPSSTTSDDGLSTF
CDHGLDFGDELM*
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mRNA from alignment at P-littoralis_Contig645:90042..90695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig645.25.1 ID=mRNA_P-littoralis_Contig645.25.1|Name=mRNA_P-littoralis_Contig645.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig645:90042..90695+ (Pylaiella littoralis U1_48)
ACAGCAGTGGAGTTTTTTAGGGAACTGATTGGAAAGGAACAACAAGAAAG
AGCTGTTATGTGAGAGAGCGGCGGTGATGGAGGTGACCTAAGGCAACGCC
GGCAGTGAAGAAGCGTTACGAGAGCATGGTGCTGGTGATGTGGCCTTGGG
CAACGCCAACAGCAACGTGGACCCAGACAAGGAGGACATGTTTAGGGCGA
CATCATCACCAGCGTCGCAAGGACGGCATGGAGATACCATCCTCGACAAC
ATCTGATGATACGTGTGTGTTTTTGTGTTTTTTCTTTTTCTGTCTTCTCC
TATTATTGCCGGGGCTACTTGTACGTTGCAGGCAGCCCTCCAGACAGCAA
TTAACTGCTGTAGTCTGCAGCTACCTACTGACTGCTTGTAGCAGCAGGTT
ATAAGTTATAAGTGGGGCGGGAGGAGACTGAACACGATGCTGTAGTCAAA
TCAACGACGCTGGAAGTACGTTTGATGTTAATACTGCTGTGACTGCTGTA
GTTCAGTGATGCGCACCGCGTAGGAAGGTGTATCTTCTTCGGTCCTTCTT
GGGAATTCCCTTGTAGTTTCTTTCTGTTTTTTTATATTCCTAGGGCTCAG
CACTTTTTGTGACCACGGGCTAGATTTTGGCGATGAGCTAATGTGAGAAT
CAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig645:90042..90695+

>mRNA_P-littoralis_Contig645.25.1 ID=mRNA_P-littoralis_Contig645.25.1|Name=mRNA_P-littoralis_Contig645.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig645:90042..90695+ (Pylaiella littoralis U1_48)
ATGGTGCTGGTGATGTGGCCTTGGGCAACGCCAACAGCAACGTGGACCCA
GACAAGGAGGACATGTTTAGGGCGACATCATCACCAGCGTCGCAAGGACG
GCATGGAGATACCATCCTCGACAACATCTGATGATGGGCTCAGCACTTTT
TGTGACCACGGGCTAGATTTTGGCGATGAGCTAATGTGA
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